Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003573

Physical Location & Seq

Genomic Coordinates Forward (+)

17768042 .. 17769676

Gene Structure 1635 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G37790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGGTCTTGATGATTCATGCAACACAGGTCTTGTTCTTGGTTTAGGCCTCTCACCAACGCCTAATAATTACAATCATGCCATCAAGAAATCTTCCTCCACTGTGGACCATCGTTTCATCAGGCTCGATCCGTCGTTGACTCTAAGCCTATCCGGTGAGAGCTACAAGATCAAGACTGGTGCCGGCGCCGGCGACCAAATTTGCCGGCAGACCTCGTCCCACAGCGGCATCTCATCTTTCTCGAGCGGAAGGGTAAAGAGAGAAAGAGAAATCTCCGGCGGCGATGGAGAAGAAGAGGCGGAGGAGACGACGGAGAGAGTGGTGTGTTCGAGAGTGAGTGATGATCATGACGATGAAGAAGGTGTTAGTGCTCGTAAAAAGCTTAGACTCACTAAACAACAATCTGCTCTTCTCGAAGATAACTTCAAACTTCATAGCACCCTTAATCCCAAGCAAAAACAAGCTCTTGCGAGACAGCTGAATCTAAGGCCTAGACAAGTTGAAGTGTGGTTCCAAAACAGGAGAGCTAGAACAAAACTAAAGCAAACAGAAGTGGATTGTGAGTTTTTGAAGAAATGTTGCGAGACTTTAACGGATGAGAATAGAAGGCTTCAAAAAGAGCTTCAAGACCTTAAGGCTTTAAAATTGTCTCAACCGTTTTACATGCACATGCCGGCGGCGACTTTGACTATGTGCCCTTCTTGTGAGAGACTCGGCGGTGGTGGTGTCGGAGGAGATACGACGGCGGTTGATGAAGAAACGGCGAAAGGAGCTTTCTCCATCGTCACAAAGCCTCGTTTCTATAACCCTTTCACTAATCCTTCTGCAGCATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009738 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033993 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

278

Amino Acids

30.73

Weight (kDa)

8.33

Isoelectric Point (pI)

51.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	125 - 179	4.8e-15	Homeodomain
HALZ	PF02183	181 - 215	1.2e-09	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22800 AT4G37790
fragaria_vesca	FvH4_1g18530 FvH4_2g32410
malus_domestica	MD02G1192800.v1.1 MD08G1075400.v1.1 MD08G1075500.v1.1 MD15G1062900.v1.1 MD15G1302900.v1.1
prunus_persica	Prupe.1G416800_v2.0.a1 Prupe.6G213800_v2.0.a1
pyrus_communis	pycom02g15660 pycom08g06230 pycom15g05950 pycom15g26620
rosa_chinensis	RchiOBHm_Chr2g0109191 RchiOBHm_Chr6g0310291
rosa_laevigata	RLG00000010494 RLG00000017725
rosa_multiflora	Rmu_sc0002348.1_g000019 Rmu_sc0002348.1_g000020 Rmu_sc0009436.1_g000008
rosa_roxburghii	Rroxscaffold_2G00134400 Rroxscaffold_7G00158690
rosa_rugosa	Rorug02G0158300 Rorug06G0378500
rosa_samantha	Rh2AG209900 Rh2BG220300 Rh2CG212300 Rh2DG216100 Rh6AG492900 Rh6BG502500 Rh6CG507500 Rh6DG493600
rosa_wichuraiana	Rw6G042890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	179, 185
AccBSI	CCGCTC	1 cut(s)	246
AciI	CCGC	7 cut(s)	225, 246, 279, 299, 677, 717, 746
AclWI	GGATC	1 cut(s)	122
AcsI	RAATTY	1 cut(s)	198
AcyI	GRCGYC	1 cut(s)	186
AflII	CTTAAG	1 cut(s)	632
AgsI	TTSAA	5 cut(s)	427, 503, 571, 614, 626
AluBI	AGCT	7 cut(s)	162, 382, 464, 478, 527, 622, 773
AluI	AGCT	7 cut(s)	162, 382, 464, 478, 527, 622, 773
Alw21I	GWGCWC	1 cut(s)	373
Alw26I	GTCTC	5 cut(s)	299, 466, 578, 654, 703
AlwI	GGATC	1 cut(s)	122
Ama87I	CYCGRG	1 cut(s)	241
AoxI	GGCC	2 cut(s)	46, 488
ApeKI	GCWGC	1 cut(s)	827
ApoI	RAATTY	1 cut(s)	198
AspLEI	GCGC	1 cut(s)	188
AspS9I	GGNCC	1 cut(s)	106
AsuHPI	GGTGA	2 cut(s)	45, 167
AvaI	CYCGRG	1 cut(s)	241
AvaII	GGWCC	1 cut(s)	106
BaeGI	GKGCMC	1 cut(s)	698
BanI	GGYRCC	2 cut(s)	179, 185
Bbv12I	GWGCWC	1 cut(s)	373
BccI	CCATC	4 cut(s)	89, 117, 278, 788
BceAI	ACGGC	2 cut(s)	759, 777
BclI	TGATCA	1 cut(s)	343
BcoDI	GTCTC	5 cut(s)	299, 466, 578, 654, 703
BfaI	CTAG	2 cut(s)	492, 528
BfmI	CTRYAG	1 cut(s)	825
BfoI	RGCGCY	1 cut(s)	189
BfrI	CTTAAG	1 cut(s)	632
BisI	GCNGC	4 cut(s)	226, 280, 678, 828
BlsI	GCNGC	4 cut(s)	227, 281, 679, 829
Bme18I	GGWCC	1 cut(s)	106
BmeT110I	CYCGRG	1 cut(s)	241
BmgT120I	GGNCC	1 cut(s)	106
BmiI	GGNNCC	3 cut(s)	181, 187, 512
BmsI	GCATC	1 cut(s)	237
BsaHI	GRCGYC	1 cut(s)	186
BsaWI	WCCGGW	1 cut(s)	152
Bse118I	RCCGGY	4 cut(s)	182, 188, 204, 673
Bse1I	ACTGG	1 cut(s)	181
BseGI	GGATG	1 cut(s)	601
BseNI	ACTGG	1 cut(s)	181
BseRI	GAGGAG	2 cut(s)	317, 747
BseSI	GKGCMC	1 cut(s)	698
BshFI	GGCC	2 cut(s)	48, 490
BshNI	GGYRCC	2 cut(s)	179, 185
BsiHKAI	GWGCWC	1 cut(s)	373
BsiHKCI	CYCGRG	1 cut(s)	241
BsiSI	CCGG	6 cut(s)	153, 183, 189, 205, 276, 674
BslFI	GGGAC	1 cut(s)	202
BsmAI	GTCTC	5 cut(s)	299, 466, 578, 654, 703
BsmBI	CGTCTC	1 cut(s)	299
BsmFI	GGGAC	1 cut(s)	202
BsnI	GGCC	2 cut(s)	48, 490
BsoBI	CYCGRG	1 cut(s)	241
Bsp1286I	GDGCHC	2 cut(s)	373, 698
Bsp143I	GATC	3 cut(s)	127, 168, 343
BspACI	CCGC	7 cut(s)	225, 246, 279, 299, 677, 717, 746
BspANI	GGCC	2 cut(s)	48, 490
BspHI	TCATGA	1 cut(s)	346
BspLI	GGNNCC	3 cut(s)	181, 187, 512
BspMAI	CTGCAG	1 cut(s)	829
BspPI	GGATC	1 cut(s)	122
BspQI	GCTCTTC	1 cut(s)	414
BspT107I	GGYRCC	2 cut(s)	179, 185
BspTI	CTTAAG	1 cut(s)	632
BsrBI	CCGCTC	1 cut(s)	246
BsrFI	RCCGGY	4 cut(s)	182, 188, 204, 673
BsrI	ACTGG	1 cut(s)	181
BssAI	RCCGGY	4 cut(s)	182, 188, 204, 673
BssMI	GATC	3 cut(s)	127, 168, 343
BssNI	GRCGYC	1 cut(s)	186
Bst4CI	ACNGT	2 cut(s)	103, 657
Bst6I	CTCTTC	2 cut(s)	288, 414
BstACI	GRCGYC	1 cut(s)	186
BstAFI	CTTAAG	1 cut(s)	632
BstC8I	GCNNGC	4 cut(s)	184, 190, 206, 675
BstDEI	CTNAG	3 cut(s)	143, 383, 485
BstF5I	GGATG	1 cut(s)	601
BstH2I	RGCGCY	1 cut(s)	189
BstHHI	GCGC	1 cut(s)	188
BstKTI	GATC	3 cut(s)	130, 171, 346
BstMAI	GTCTC	5 cut(s)	299, 466, 578, 654, 703
BstMBI	GATC	3 cut(s)	127, 168, 343
BstMWI	GCNNNNNNNGC	1 cut(s)	770
BstNSI	RCATGY	3 cut(s)	667, 673, 834
BstSFI	CTRYAG	1 cut(s)	825
BstSLI	GKGCMC	1 cut(s)	698
BsuRI	GGCC	2 cut(s)	48, 490
BtgZI	GCGATG	1 cut(s)	297
BtsCI	GGATG	1 cut(s)	601
BtsIMutI	CAGTG	1 cut(s)	99
Cac8I	GCNNGC	4 cut(s)	184, 190, 206, 675
CciI	TCATGA	1 cut(s)	346
CfoI	GCGC	1 cut(s)	188
Cfr10I	RCCGGY	4 cut(s)	182, 188, 204, 673
Cfr13I	GGNCC	1 cut(s)	106
CviAII	CATG	6 cut(s)	18, 77, 347, 664, 670, 831
DdeI	CTNAG	3 cut(s)	143, 383, 485
DinI	GGCGCC	1 cut(s)	187
DpnI	GATC	3 cut(s)	129, 170, 345
DpnII	GATC	3 cut(s)	127, 168, 343
DraI	TTTAAA	1 cut(s)	642
Eam1104I	CTCTTC	2 cut(s)	288, 414
EarI	CTCTTC	2 cut(s)	288, 414
EciI	GGCGGA	1 cut(s)	314
Eco147I	AGGCCT	2 cut(s)	48, 490
Eco47I	GGWCC	1 cut(s)	106
Eco88I	CYCGRG	1 cut(s)	241
EgeI	GGCGCC	1 cut(s)	187
EheI	GGCGCC	1 cut(s)	187
Esp3I	CGTCTC	1 cut(s)	299
FaeI	CATG	6 cut(s)	21, 80, 350, 667, 673, 834
FaiI	YATR	9 cut(s)	19, 78, 348, 435, 665, 671, 692, 804, 832
FaqI	GGGAC	1 cut(s)	202
FatI	CATG	6 cut(s)	17, 76, 346, 663, 669, 830
FbaI	TGATCA	1 cut(s)	343
Fnu4HI	GCNGC	4 cut(s)	226, 280, 678, 828
FokI	GGATG	1 cut(s)	608
Fsp4HI	GCNGC	4 cut(s)	226, 280, 678, 828
FspBI	CTAG	2 cut(s)	492, 528
GlaI	GCGC	1 cut(s)	187
GluI	GCNGC	4 cut(s)	226, 280, 678, 828
HaeII	RGCGCY	1 cut(s)	189
HaeIII	GGCC	2 cut(s)	48, 490
HapII	CCGG	6 cut(s)	153, 183, 189, 205, 276, 674
HhaI	GCGC	1 cut(s)	188
Hin1I	GRCGYC	1 cut(s)	186
Hin1II	CATG	6 cut(s)	21, 80, 350, 667, 673, 834
Hin6I	GCGC	1 cut(s)	186
HinP1I	GCGC	1 cut(s)	186
HincII	GTYRAC	1 cut(s)	138
HindII	GTYRAC	1 cut(s)	138
HindIII	AAGCTT	1 cut(s)	380
HinfI	GANTC	5 cut(s)	14, 139, 387, 481, 711
HpaII	CCGG	6 cut(s)	153, 183, 189, 205, 276, 674
HphI	GGTGA	2 cut(s)	45, 167
Hpy166II	GTNNAC	2 cut(s)	106, 138
Hpy188I	TCNGA	1 cut(s)	731
Hpy188III	TCNNGA	8 cut(s)	8, 85, 172, 241, 330, 347, 413, 626
Hpy8I	GTNNAC	2 cut(s)	106, 138
Hpy99I	CGWCG	3 cut(s)	136, 313, 745
HpyAV	CCTTC	5 cut(s)	243, 353, 600, 708, 831
HpyCH4III	ACNGT	2 cut(s)	103, 657
HpyCH4V	TGCA	3 cut(s)	21, 667, 827
HpyF10VI	GCNNNNNNNGC	1 cut(s)	770
HpyF3I	CTNAG	3 cut(s)	143, 383, 485
Hsp92I	GRCGYC	1 cut(s)	186
Hsp92II	CATG	6 cut(s)	21, 80, 350, 667, 673, 834
HspAI	GCGC	1 cut(s)	186
KasI	GGCGCC	1 cut(s)	185
KroI	GCCGGC	4 cut(s)	182, 188, 204, 673
KroNI	GCCGGC	4 cut(s)	184, 190, 206, 675
Ksp22I	TGATCA	1 cut(s)	343
Kzo9I	GATC	3 cut(s)	127, 168, 343
LguI	GCTCTTC	1 cut(s)	414
LmnI	GCTCC	1 cut(s)	770
LweI	GCATC	1 cut(s)	237
MaeI	CTAG	2 cut(s)	492, 528
MaeIII	GTNAC	1 cut(s)	784
MalI	GATC	3 cut(s)	129, 170, 345
MbiI	CCGCTC	1 cut(s)	246
MboI	GATC	3 cut(s)	127, 168, 343
MboII	GAAGA	8 cut(s)	84, 302, 305, 368, 401, 428, 583, 767
MhlI	GDGCHC	2 cut(s)	373, 698
MluCI	AATT	3 cut(s)	67, 198, 644
Mly113I	GGCGCC	1 cut(s)	186
MlyI	GAGTC	3 cut(s)	133, 381, 705
MmeI	TCCRAC	1 cut(s)	709
MnlI	CCTC	7 cut(s)	59, 106, 223, 289, 295, 725, 804
MreI	CGCCGGCG	1 cut(s)	188
MroNI	GCCGGC	4 cut(s)	182, 188, 204, 673
MseI	TTAA	4 cut(s)	444, 590, 633, 641
MslI	CAYNNNNRTG	2 cut(s)	351, 668
MspA1I	CMGCKG	2 cut(s)	225, 478
MspCI	CTTAAG	1 cut(s)	632
MspI	CCGG	6 cut(s)	153, 183, 189, 205, 276, 674
MwoI	GCNNNNNNNGC	1 cut(s)	770
NaeI	GCCGGC	4 cut(s)	184, 190, 206, 675
NarI	GGCGCC	1 cut(s)	186
NdeII	GATC	3 cut(s)	127, 168, 343
NgoMIV	GCCGGC	4 cut(s)	182, 188, 204, 673
NlaIII	CATG	6 cut(s)	21, 80, 350, 667, 673, 834
NlaIV	GGNNCC	3 cut(s)	181, 187, 512
NmeAIII	GCCGAG	1 cut(s)	693
NmuCI	GTSAC	1 cut(s)	784
NspI	RCATGY	3 cut(s)	667, 673, 834
PaeR7I	CTCGAG	1 cut(s)	241
PagI	TCATGA	1 cut(s)	346
PceI	AGGCCT	2 cut(s)	48, 490
PciSI	GCTCTTC	1 cut(s)	414
PdiI	GCCGGC	4 cut(s)	184, 190, 206, 675
PfeI	GAWTC	2 cut(s)	14, 481
PflFI	GACNNNGTC	1 cut(s)	214
PkrI	GCNGC	4 cut(s)	227, 281, 679, 829
PleI	GAGTC	3 cut(s)	133, 381, 705
PluTI	GGCGCC	1 cut(s)	189
PpsI	GAGTC	3 cut(s)	133, 381, 705
PspN4I	GGNNCC	3 cut(s)	181, 187, 512
PspPI	GGNCC	1 cut(s)	106
PstI	CTGCAG	1 cut(s)	829
PsyI	GACNNNGTC	1 cut(s)	214
PvuII	CAGCTG	1 cut(s)	478
RseI	CAYNNNNRTG	2 cut(s)	351, 668
SapI	GCTCTTC	1 cut(s)	414
SaqAI	TTAA	4 cut(s)	444, 590, 633, 641
SatI	GCNGC	4 cut(s)	226, 280, 678, 828
Sau3AI	GATC	3 cut(s)	127, 168, 343
Sau96I	GGNCC	1 cut(s)	106
SchI	GAGTC	3 cut(s)	133, 381, 705
SduI	GDGCHC	2 cut(s)	373, 698
SfaNI	GCATC	1 cut(s)	237
SfcI	CTRYAG	1 cut(s)	825
SfoI	GGCGCC	1 cut(s)	187
Sfr274I	CTCGAG	1 cut(s)	241
SgrAI	CRCCGGYG	1 cut(s)	188
SinI	GGWCC	1 cut(s)	106
SlaI	CTCGAG	1 cut(s)	241
SmiMI	CAYNNNNRTG	2 cut(s)	351, 668
SmlI	CTYRAG	2 cut(s)	241, 632
SmoI	CTYRAG	2 cut(s)	241, 632
Sse9I	AATT	3 cut(s)	67, 198, 644
SseBI	AGGCCT	2 cut(s)	48, 490
SsiI	CCGC	7 cut(s)	225, 246, 279, 299, 677, 717, 746
SspDI	GGCGCC	1 cut(s)	185
SspMI	CTAG	2 cut(s)	492, 528
StuI	AGGCCT	2 cut(s)	48, 490
TaaI	ACNGT	2 cut(s)	103, 657
TaqI	TCGA	4 cut(s)	126, 242, 329, 414
TasI	AATT	3 cut(s)	67, 198, 644
TauI	GCSGC	3 cut(s)	228, 282, 680
TfiI	GAWTC	2 cut(s)	14, 481
Tru1I	TTAA	4 cut(s)	444, 590, 633, 641
Tru9I	TTAA	4 cut(s)	444, 590, 633, 641
TscAI	CASTG	1 cut(s)	106
TseFI	GTSAC	1 cut(s)	784
TseI	GCWGC	1 cut(s)	827
Tsp45I	GTSAC	1 cut(s)	784
TspDTI	ATGAA	5 cut(s)	6, 106, 369, 422, 768
TspGWI	ACGGA	3 cut(s)	120, 326, 608
TspRI	CASTG	1 cut(s)	106
Tth111I	GACNNNGTC	1 cut(s)	214
Vha464I	CTTAAG	1 cut(s)	632
VpaK11BI	GGWCC	1 cut(s)	106
XapI	RAATTY	1 cut(s)	198
XceI	RCATGY	3 cut(s)	667, 673, 834
XhoI	CTCGAG	1 cut(s)	241
XspI	CTAG	2 cut(s)	492, 528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.