Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003573

Physical Location & Seq

Genomic Coordinates Forward (+)

21281818 .. 21283845

Gene Structure 2028 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG220300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGGTTTTGATGATCCTCATGCTTGTAACACAGGCCTTGTCTTAGGTTTAGGTCTCACAGCTTCCCAAGAGAGCACCAGTCCTACTCCACAAAAGGCTCACCATCAGATGAATCCCATGCTCAAGAAGCCTAATTCCTTTGAGCCATCTTTAACTTTGGGTCTCTTTGGAAATAGTTTTCATGAGGATGATCATCAAGGGAATAGTCTTGATTTGTATAGGCAAGGGTCTCCTCATAATAGTCATAGCGCAGTTTCTAATTCCTTCTCGAGTGGTAGAGTGGTCAAGAGGGAGAGAGACCTCAGCAGTGAGGAGGTTGAGGTTGAGAAGGTCTCTTCCAGAGTGATTAGTGATGAAGATGAAGATGGTCCTAATGCAAGAAAGAAGCTCAGGCTCACCAAAGAACAATCTGCGCTCTTAGAAGAAAGCTTCAAACAACACAGCACTCTCAATCCTAAGCAAAAGCAAGCTTTAGCCAGGCAGTTAAGTTTGAGGCCTCGACAAGTAGAAGTTTGGTTCCAAAACAGGAGGGCCAGGACAAAGCTTAAGCAAACTGAGGTGGACTGTGAGTTCTTGAAGAAATGCTGTGAGACTCTGACAGATGAGAACCGGAGGCTACAGAAAGAGGTACAAGAACTCAAGGCACTGAAACTCAGCCAACAACAACCGTTGTTCATGCACATGCCGGCGGCGACTCTCACCATGTGTCCTTCCTGTGAAAGGATCGGAGGCGTGGGAAGCGAAGGTGCTAATTCAAATAAGAGCCCGTTTTCAATTGCTCATACAAAGCCTCACTTCTATAATCCCTTCACCAATTCTTCTGCAGCTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009738 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033993 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

277

Amino Acids

31.0

Weight (kDa)

8.43

Isoelectric Point (pI)

54.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	127 - 181	1.2e-15	Homeodomain
HALZ	PF02183	183 - 217	1.1e-10	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22800 AT4G37790
fragaria_vesca	FvH4_1g18530 FvH4_2g32410
malus_domestica	MD02G1192800.v1.1 MD08G1075400.v1.1 MD08G1075500.v1.1 MD15G1062900.v1.1 MD15G1302900.v1.1
prunus_persica	Prupe.1G416800_v2.0.a1 Prupe.6G213800_v2.0.a1
pyrus_communis	pycom02g15660 pycom08g06230 pycom15g05950 pycom15g26620
rosa_chinensis	RchiOBHm_Chr2g0109191 RchiOBHm_Chr6g0310291
rosa_laevigata	RLG00000010494 RLG00000017725
rosa_multiflora	Rmu_sc0002348.1_g000019 Rmu_sc0002348.1_g000020 Rmu_sc0009436.1_g000008
rosa_roxburghii	Rroxscaffold_2G00134400 Rroxscaffold_7G00158690
rosa_rugosa	Rorug02G0158300 Rorug06G0378500
rosa_samantha	Rh2AG209900 Rh2BG220300 Rh2CG212300 Rh2DG216100 Rh6AG492900 Rh6BG502500 Rh6CG507500 Rh6DG493600
rosa_wichuraiana	Rw6G042890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	689
AclWI	GGATC	2 cut(s)	8, 731
AdeI	CACNNNGTG	1 cut(s)	705
AfaI	GTAC	1 cut(s)	630
AfiI	CCNNNNNNNGG	1 cut(s)	720
AflII	CTTAAG	1 cut(s)	545
AgsI	TTSAA	4 cut(s)	433, 577, 756, 774
AjnI	CCWGG	2 cut(s)	476, 533
AloI	GAACNNNNNNTCC	2 cut(s)	554, 586
AluBI	AGCT	6 cut(s)	62, 388, 429, 470, 544, 827
AluI	AGCT	6 cut(s)	62, 388, 429, 470, 544, 827
Alw21I	GWGCWC	1 cut(s)	77
Alw26I	GTCTC	6 cut(s)	59, 167, 234, 291, 337, 584
AlwI	GGATC	2 cut(s)	8, 731
Ama87I	CYCGRG	1 cut(s)	268
AoxI	GGCC	3 cut(s)	34, 494, 531
ApeKI	GCWGC	1 cut(s)	824
AspLEI	GCGC	2 cut(s)	251, 415
AspS9I	GGNCC	2 cut(s)	368, 531
AsuHPI	GGTGA	4 cut(s)	92, 388, 691, 802
AvaI	CYCGRG	1 cut(s)	268
AvaII	GGWCC	1 cut(s)	368
BanII	GRGCYC	1 cut(s)	767
Bbv12I	GWGCWC	1 cut(s)	77
BbvCI	CCTCAGC	1 cut(s)	302
BccI	CCATC	3 cut(s)	111, 154, 359
BciT130I	CCWGG	2 cut(s)	478, 535
BclI	TGATCA	1 cut(s)	190
BcoDI	GTCTC	6 cut(s)	59, 167, 234, 291, 337, 584
BfmI	CTRYAG	2 cut(s)	617, 822
BfrI	CTTAAG	1 cut(s)	545
BisI	GCNGC	2 cut(s)	690, 825
BlsI	GCNGC	2 cut(s)	691, 826
Bme1390I	CCNGG	2 cut(s)	478, 535
Bme18I	GGWCC	1 cut(s)	368
BmeT110I	CYCGRG	1 cut(s)	268
BmgT120I	GGNCC	2 cut(s)	368, 531
BmiI	GGNNCC	1 cut(s)	518
BmrFI	CCNGG	2 cut(s)	478, 535
BplI	GAGNNNNNCTC	2 cut(s)	317, 349
Bpu10I	CCTNAGC	3 cut(s)	302, 389, 456
BpuEI	CTTGAG	2 cut(s)	107, 623
BsaBI	GATNNNNATC	1 cut(s)	192
BsaI	GGTCTC	5 cut(s)	59, 167, 234, 291, 337
BsaWI	WCCGGW	1 cut(s)	609
Bsc4I	CCNNNNNNNGG	1 cut(s)	720
Bse118I	RCCGGY	1 cut(s)	685
Bse1I	ACTGG	1 cut(s)	78
Bse8I	GATNNNNATC	1 cut(s)	192
BseBI	CCWGG	2 cut(s)	478, 535
BseGI	GGATG	1 cut(s)	193
BseJI	GATNNNNATC	1 cut(s)	192
BseLI	CCNNNNNNNGG	1 cut(s)	720
BseMII	CTCAG	4 cut(s)	316, 403, 546, 667
BseNI	ACTGG	1 cut(s)	78
BseRI	GAGGAG	2 cut(s)	222, 326
BshFI	GGCC	3 cut(s)	36, 496, 533
BsiHKAI	GWGCWC	1 cut(s)	77
BsiHKCI	CYCGRG	1 cut(s)	268
BsiSI	CCGG	2 cut(s)	610, 686
BslI	CCNNNNNNNGG	1 cut(s)	720
BsmAI	GTCTC	6 cut(s)	59, 167, 234, 291, 337, 584
BsnI	GGCC	3 cut(s)	36, 496, 533
Bso31I	GGTCTC	5 cut(s)	59, 167, 234, 291, 337
BsoBI	CYCGRG	1 cut(s)	268
Bsp1286I	GDGCHC	2 cut(s)	77, 767
Bsp143I	GATC	3 cut(s)	13, 190, 723
BspACI	CCGC	1 cut(s)	689
BspANI	GGCC	3 cut(s)	36, 496, 533
BspCNI	CTCAG	4 cut(s)	315, 402, 547, 666
BspHI	TCATGA	1 cut(s)	181
BspLI	GGNNCC	1 cut(s)	518
BspMAI	CTGCAG	1 cut(s)	826
BspPI	GGATC	2 cut(s)	8, 731
BspTI	CTTAAG	1 cut(s)	545
BspTNI	GGTCTC	5 cut(s)	59, 167, 234, 291, 337
BsrFI	RCCGGY	1 cut(s)	685
BsrI	ACTGG	1 cut(s)	78
BssAI	RCCGGY	1 cut(s)	685
BssMI	GATC	3 cut(s)	13, 190, 723
Bst2UI	CCWGG	2 cut(s)	478, 535
Bst4CI	ACNGT	2 cut(s)	566, 669
Bst6I	CTCTTC	1 cut(s)	340
BstAFI	CTTAAG	1 cut(s)	545
BstC8I	GCNNGC	2 cut(s)	468, 687
BstDEI	CTNAG	7 cut(s)	43, 302, 389, 418, 456, 555, 653
BstENI	CCTNNNNNAGG	1 cut(s)	718
BstF5I	GGATG	1 cut(s)	193
BstHHI	GCGC	2 cut(s)	251, 415
BstKTI	GATC	3 cut(s)	16, 193, 726
BstMAI	GTCTC	6 cut(s)	59, 167, 234, 291, 337, 584
BstMBI	GATC	3 cut(s)	13, 190, 723
BstMWI	GCNNNNNNNGC	2 cut(s)	127, 738
BstNI	CCWGG	2 cut(s)	478, 535
BstNSI	RCATGY	1 cut(s)	685
BstSCI	CCNGG	2 cut(s)	476, 533
BstSFI	CTRYAG	2 cut(s)	617, 822
BsuRI	GGCC	3 cut(s)	36, 496, 533
BtsCI	GGATG	1 cut(s)	193
BtsI	GCAGTG	1 cut(s)	313
BtsIMutI	CAGTG	2 cut(s)	313, 644
Cac8I	GCNNGC	2 cut(s)	468, 687
CciI	TCATGA	1 cut(s)	181
CfoI	GCGC	2 cut(s)	251, 415
Cfr10I	RCCGGY	1 cut(s)	685
Cfr13I	GGNCC	2 cut(s)	368, 531
Csp6I	GTAC	1 cut(s)	629
CviAII	CATG	6 cut(s)	20, 118, 182, 676, 682, 703
CviQI	GTAC	1 cut(s)	629
DdeI	CTNAG	7 cut(s)	43, 302, 389, 418, 456, 555, 653
DpnI	GATC	3 cut(s)	15, 192, 725
DpnII	GATC	3 cut(s)	13, 190, 723
DraIII	CACNNNGTG	1 cut(s)	705
Eam1104I	CTCTTC	1 cut(s)	340
EarI	CTCTTC	1 cut(s)	340
Eco147I	AGGCCT	2 cut(s)	36, 496
Eco24I	GRGCYC	1 cut(s)	767
Eco31I	GGTCTC	5 cut(s)	59, 167, 234, 291, 337
Eco47I	GGWCC	1 cut(s)	368
Eco88I	CYCGRG	1 cut(s)	268
EcoNI	CCTNNNNNAGG	1 cut(s)	718
EcoRII	CCWGG	2 cut(s)	476, 533
EcoT38I	GRGCYC	1 cut(s)	767
FaeI	CATG	6 cut(s)	23, 121, 185, 679, 685, 706
FalI	AAGNNNNNCTT	2 cut(s)	779, 811
FatI	CATG	6 cut(s)	19, 117, 181, 675, 681, 702
FbaI	TGATCA	1 cut(s)	190
Fnu4HI	GCNGC	2 cut(s)	690, 825
FokI	GGATG	1 cut(s)	200
FriOI	GRGCYC	1 cut(s)	767
Fsp4HI	GCNGC	2 cut(s)	690, 825
GlaI	GCGC	2 cut(s)	250, 414
GluI	GCNGC	2 cut(s)	690, 825
HaeIII	GGCC	3 cut(s)	36, 496, 533
HapII	CCGG	2 cut(s)	610, 686
HhaI	GCGC	2 cut(s)	251, 415
Hin1II	CATG	6 cut(s)	23, 121, 185, 679, 685, 706
Hin6I	GCGC	2 cut(s)	249, 413
HinP1I	GCGC	2 cut(s)	249, 413
HindIII	AAGCTT	3 cut(s)	427, 468, 542
HinfI	GANTC	3 cut(s)	112, 592, 694
HpaII	CCGG	2 cut(s)	610, 686
HphI	GGTGA	4 cut(s)	92, 388, 691, 802
Hpy166II	GTNNAC	1 cut(s)	562
Hpy188I	TCNGA	3 cut(s)	108, 597, 728
Hpy188III	TCNNGA	7 cut(s)	124, 182, 209, 268, 286, 339, 574
Hpy8I	GTNNAC	1 cut(s)	562
HpyAV	CCTTC	5 cut(s)	274, 322, 720, 737, 817
HpyCH4III	ACNGT	2 cut(s)	566, 669
HpyCH4V	TGCA	3 cut(s)	377, 679, 824
HpyF10VI	GCNNNNNNNGC	2 cut(s)	127, 738
HpyF3I	CTNAG	7 cut(s)	43, 302, 389, 418, 456, 555, 653
Hsp92II	CATG	6 cut(s)	23, 121, 185, 679, 685, 706
HspAI	GCGC	2 cut(s)	249, 413
KroI	GCCGGC	1 cut(s)	685
KroNI	GCCGGC	1 cut(s)	687
Ksp22I	TGATCA	1 cut(s)	190
Kzo9I	GATC	3 cut(s)	13, 190, 723
MaeIII	GTNAC	1 cut(s)	26
MalI	GATC	3 cut(s)	15, 192, 725
MboI	GATC	3 cut(s)	13, 190, 723
MboII	GAAGA	6 cut(s)	327, 368, 374, 434, 589, 810
MfeI	CAATTG	1 cut(s)	774
MhlI	GDGCHC	2 cut(s)	77, 767
MluCI	AATT	5 cut(s)	133, 259, 751, 774, 814
MlyI	GAGTC	2 cut(s)	586, 688
MroNI	GCCGGC	1 cut(s)	685
MseI	TTAA	4 cut(s)	152, 485, 546, 832
MslI	CAYNNNNRTG	2 cut(s)	186, 680
MspCI	CTTAAG	1 cut(s)	545
MspI	CCGG	2 cut(s)	610, 686
MspR9I	CCNGG	2 cut(s)	478, 535
MunI	CAATTG	1 cut(s)	774
MvaI	CCWGG	2 cut(s)	478, 535
MwoI	GCNNNNNNNGC	2 cut(s)	127, 738
NaeI	GCCGGC	1 cut(s)	687
NdeII	GATC	3 cut(s)	13, 190, 723
NgoMIV	GCCGGC	1 cut(s)	685
NlaIII	CATG	6 cut(s)	23, 121, 185, 679, 685, 706
NlaIV	GGNNCC	1 cut(s)	518
NspI	RCATGY	1 cut(s)	685
PaeR7I	CTCGAG	1 cut(s)	268
PagI	TCATGA	1 cut(s)	181
PceI	AGGCCT	2 cut(s)	36, 496
PdiI	GCCGGC	1 cut(s)	687
PfeI	GAWTC	1 cut(s)	112
PkrI	GCNGC	2 cut(s)	691, 826
PleI	GAGTC	2 cut(s)	586, 688
PpsI	GAGTC	2 cut(s)	586, 688
Psp6I	CCWGG	2 cut(s)	476, 533
PspGI	CCWGG	2 cut(s)	476, 533
PspN4I	GGNNCC	1 cut(s)	518
PspPI	GGNCC	2 cut(s)	368, 531
PstI	CTGCAG	1 cut(s)	826
RsaI	GTAC	1 cut(s)	630
RsaNI	GTAC	1 cut(s)	629
RseI	CAYNNNNRTG	2 cut(s)	186, 680
SaqAI	TTAA	4 cut(s)	152, 485, 546, 832
SatI	GCNGC	2 cut(s)	690, 825
Sau3AI	GATC	3 cut(s)	13, 190, 723
Sau96I	GGNCC	2 cut(s)	368, 531
SchI	GAGTC	2 cut(s)	586, 688
ScrFI	CCNGG	2 cut(s)	478, 535
SduI	GDGCHC	2 cut(s)	77, 767
SfcI	CTRYAG	2 cut(s)	617, 822
Sfr274I	CTCGAG	1 cut(s)	268
SinI	GGWCC	1 cut(s)	368
SlaI	CTCGAG	1 cut(s)	268
SmiMI	CAYNNNNRTG	2 cut(s)	186, 680
SmlI	CTYRAG	4 cut(s)	122, 268, 545, 638
SmoI	CTYRAG	4 cut(s)	122, 268, 545, 638
Sse9I	AATT	5 cut(s)	133, 259, 751, 774, 814
SseBI	AGGCCT	2 cut(s)	36, 496
SsiI	CCGC	1 cut(s)	689
StuI	AGGCCT	2 cut(s)	36, 496
StyD4I	CCNGG	2 cut(s)	476, 533
TaaI	ACNGT	2 cut(s)	566, 669
TaqI	TCGA	2 cut(s)	269, 499
TasI	AATT	5 cut(s)	133, 259, 751, 774, 814
TauI	GCSGC	1 cut(s)	692
TfiI	GAWTC	1 cut(s)	112
Tru1I	TTAA	4 cut(s)	152, 485, 546, 832
Tru9I	TTAA	4 cut(s)	152, 485, 546, 832
TscAI	CASTG	2 cut(s)	313, 651
TseI	GCWGC	1 cut(s)	824
TspDTI	ATGAA	5 cut(s)	125, 170, 369, 375, 664
TspRI	CASTG	2 cut(s)	313, 651
Vha464I	CTTAAG	1 cut(s)	545
VpaK11BI	GGWCC	1 cut(s)	368
XagI	CCTNNNNNAGG	1 cut(s)	718
XceI	RCATGY	1 cut(s)	685
XhoI	CTCGAG	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.