Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003573

Physical Location & Seq

Genomic Coordinates Reverse (-)

14129562 .. 14131586

Gene Structure 2025 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0158300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGCAGCCTCTATGCAAGCAGCTGCTACACTTATGCAACCCACAAAGGTGGGTGTGCCATCTAGGACCAGCCTGCAGTTGAGGTCCTCTAATGTTTCCAAGGCTTTTGGGTTGGAGCCAGCTGCCTCTTCTAGGCTCACTTGCTCTTTGCAGACTGATCTTAAGGAGTTTGCACACAAGTGTGTAGATGCCACCAAGATTGCTGGCTTTGCTCTCGCCACTTCCGCCCTCGTCGTCTCTGGAGCAGGAGCAGAAGGAGCCCCAAAGAGGCTGACCTACGACGAAATCCAGAGCAAGACATACATGGAAGTGAAGGGAACCGGAACTGCCAACCAATGCCCCACCATTGATGGTGGATCCGAAGCCTTTGCCTTCAAGCCAGGCAAGTACGTAGCCAAGAAGTTCTGTCTAGAGCCAACTTCCTTCACAGTCAAGGCAGATAGTGTGAGCAAGAACGCCCCACCAGAGTTCCAAAACACCAAGCTCATGACTCGCCTAACCTACACCCTTGATGAGATCGAGGGCCCTTTCGAGGTCTCCCCTGATGGAACTGTCAAGTTCGAGGAGAAAGATGGAATTGATTACGCTGCTGTTACAGTCCAGCTCCCCGGAGGTGAGCGTGTGCCTTTCTTGTTCACCATCAAGCAACTTGTGGCGTCTGGAAAGCCCGACAACTTCACCGGAGAGTTCTTGGTACCCTCATACAGAGGCTCCTCTTTCTTGGACCCAAAGGGCAGAGGTGGCTCCACCGGTTATGACAATGCCGTTGCGCTGCCAGCTGGAGGAAGAGGAGATGAGGAGGAACTTGCCAAGGAGAACACCAAGAATGTTTCATCATCAAAAGGGAAGATCACACTGAGTGTGACCAAGACCAAGCCGGAGAGCGGCGAGTTGATTGGAGTGTTTGAGAGCATTCAGCCTTCTGATACTGATTTGGGTGCCAAGGTTCCAAAGGATGTCAAAATCCAAGGGGTCTGGTATGCTCAGCTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009738 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033993 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

331

Amino Acids

35.12

Weight (kDa)

6.09

Isoelectric Point (pI)

35.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MSP	PF01716	98 - 330	2.6e-98	Manganese-stabilising protein / photosystem II polypeptide

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22800 AT4G37790
fragaria_vesca	FvH4_1g18530 FvH4_2g32410
malus_domestica	MD02G1192800.v1.1 MD08G1075400.v1.1 MD08G1075500.v1.1 MD15G1062900.v1.1 MD15G1302900.v1.1
prunus_persica	Prupe.1G416800_v2.0.a1 Prupe.6G213800_v2.0.a1
pyrus_communis	pycom02g15660 pycom08g06230 pycom15g05950 pycom15g26620
rosa_chinensis	RchiOBHm_Chr2g0109191 RchiOBHm_Chr6g0310291
rosa_laevigata	RLG00000010494 RLG00000017725
rosa_multiflora	Rmu_sc0002348.1_g000019 Rmu_sc0002348.1_g000020 Rmu_sc0009436.1_g000008
rosa_roxburghii	Rroxscaffold_2G00134400 Rroxscaffold_7G00158690
rosa_rugosa	Rorug02G0158300 Rorug06G0378500
rosa_samantha	Rh2AG209900 Rh2BG220300 Rh2CG212300 Rh2DG216100 Rh6AG492900 Rh6BG502500 Rh6CG507500 Rh6DG493600
rosa_wichuraiana	Rw6G042890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	694
AccB1I	GGYRCC	2 cut(s)	694, 938
AccBSI	CCGCTC	1 cut(s)	885
AciI	CCGC	2 cut(s)	225, 885
AclWI	GGATC	2 cut(s)	351, 364
AcyI	GRCGYC	1 cut(s)	656
AdeI	CACNNNGTG	1 cut(s)	860
AfaI	GTAC	2 cut(s)	389, 696
AfiI	CCNNNNNNNGG	5 cut(s)	132, 267, 532, 782, 884
AflII	CTTAAG	1 cut(s)	161
AgeI	ACCGGT	1 cut(s)	749
AgsI	TTSAA	1 cut(s)	376
AjnI	CCWGG	1 cut(s)	379
AleI	CACNNNNGTG	3 cut(s)	47, 178, 180
AluBI	AGCT	6 cut(s)	23, 122, 484, 604, 779, 988
AluI	AGCT	6 cut(s)	23, 122, 484, 604, 779, 988
Alw26I	GTCTC	2 cut(s)	241, 541
AlwI	GGATC	2 cut(s)	351, 364
AoxI	GGCC	1 cut(s)	523
ApaI	GGGCCC	1 cut(s)	527
ApeKI	GCWGC	6 cut(s)	5, 20, 23, 122, 587, 772
AsiGI	ACCGGT	1 cut(s)	749
Asp718I	GGTACC	1 cut(s)	694
AspLEI	GCGC	1 cut(s)	772
AspS9I	GGNCC	5 cut(s)	66, 84, 523, 524, 724
AsuC2I	CCSGG	1 cut(s)	609
AsuHPI	GGTGA	3 cut(s)	626, 628, 670
AvaII	GGWCC	3 cut(s)	66, 84, 724
BaeGI	GKGCMC	1 cut(s)	527
BamHI	GGATCC	1 cut(s)	356
BanI	GGYRCC	2 cut(s)	694, 938
BanII	GRGCYC	2 cut(s)	262, 527
BbvI	GCAGC	6 cut(s)	10, 17, 32, 109, 574, 759
BccI	CCATC	5 cut(s)	67, 344, 539, 566, 647
BceAI	ACGGC	1 cut(s)	749
BcgI	CGANNNNNNTGC	2 cut(s)	350, 384
BciT130I	CCWGG	1 cut(s)	381
BcnI	CCSGG	1 cut(s)	609
BcoDI	GTCTC	2 cut(s)	241, 541
BfaI	CTAG	3 cut(s)	63, 132, 410
BfmI	CTRYAG	1 cut(s)	74
BfrI	CTTAAG	1 cut(s)	161
BisI	GCNGC	7 cut(s)	6, 21, 24, 123, 588, 773, 886
BlpI	GCTNAGC	1 cut(s)	984
BlsI	GCNGC	7 cut(s)	7, 22, 25, 124, 589, 774, 887
Bme1390I	CCNGG	2 cut(s)	381, 609
Bme18I	GGWCC	3 cut(s)	66, 84, 724
BmgT120I	GGNCC	5 cut(s)	66, 84, 523, 524, 724
BmrFI	CCNGG	2 cut(s)	381, 609
BmsI	GCATC	1 cut(s)	178
BpmI	CTGGAG	2 cut(s)	261, 801
Bpu1102I	GCTNAGC	1 cut(s)	984
BpuMI	CCSGG	1 cut(s)	609
BsaAI	YACGTR	1 cut(s)	391
BsaHI	GRCGYC	1 cut(s)	656
BsaI	GGTCTC	1 cut(s)	541
BsaJI	CCNNGG	5 cut(s)	99, 607, 810, 942, 967
BsaWI	WCCGGW	3 cut(s)	320, 680, 749
BsaXI	ACNNNNNCTCC	2 cut(s)	695, 725
Bsc4I	CCNNNNNNNGG	5 cut(s)	132, 267, 532, 782, 884
Bse118I	RCCGGY	1 cut(s)	749
BseBI	CCWGG	1 cut(s)	381
BseDI	CCNNGG	5 cut(s)	99, 607, 810, 942, 967
BseGI	GGATG	1 cut(s)	961
BseLI	CCNNNNNNNGG	5 cut(s)	132, 267, 532, 782, 884
BseMII	CTCAG	1 cut(s)	848
BseRI	GAGGAG	4 cut(s)	578, 703, 804, 812
BseSI	GKGCMC	1 cut(s)	527
BseXI	GCAGC	6 cut(s)	10, 17, 32, 109, 574, 759
BshFI	GGCC	1 cut(s)	525
BshNI	GGYRCC	2 cut(s)	694, 938
BshTI	ACCGGT	1 cut(s)	749
BsiSI	CCGG	5 cut(s)	321, 609, 681, 750, 878
BslI	CCNNNNNNNGG	5 cut(s)	132, 267, 532, 782, 884
BsmAI	GTCTC	2 cut(s)	241, 541
BsmBI	CGTCTC	1 cut(s)	241
BsmI	GAATGC	1 cut(s)	912
BsnI	GGCC	1 cut(s)	525
Bso31I	GGTCTC	1 cut(s)	541
Bsp120I	GGGCCC	1 cut(s)	523
Bsp1286I	GDGCHC	2 cut(s)	262, 527
Bsp143I	GATC	4 cut(s)	157, 356, 516, 849
Bsp1720I	GCTNAGC	1 cut(s)	984
BspACI	CCGC	2 cut(s)	225, 885
BspANI	GGCC	1 cut(s)	525
BspCNI	CTCAG	1 cut(s)	849
BspHI	TCATGA	1 cut(s)	486
BspMAI	CTGCAG	1 cut(s)	78
BspPI	GGATC	2 cut(s)	351, 364
BspT107I	GGYRCC	2 cut(s)	694, 938
BspTI	CTTAAG	1 cut(s)	161
BspTNI	GGTCTC	1 cut(s)	541
BsrBI	CCGCTC	1 cut(s)	885
BsrFI	RCCGGY	1 cut(s)	749
BssAI	RCCGGY	1 cut(s)	749
BssECI	CCNNGG	5 cut(s)	99, 607, 810, 942, 967
BssMI	GATC	4 cut(s)	157, 356, 516, 849
BssNI	GRCGYC	1 cut(s)	656
BssT1I	CCWWGG	4 cut(s)	99, 810, 942, 967
Bst2UI	CCWGG	1 cut(s)	381
Bst4CI	ACNGT	3 cut(s)	430, 553, 598
Bst6I	CTCTTC	2 cut(s)	133, 781
BstACI	GRCGYC	1 cut(s)	656
BstAFI	CTTAAG	1 cut(s)	161
BstBAI	YACGTR	1 cut(s)	391
BstC8I	GCNNGC	5 cut(s)	18, 74, 120, 205, 777
BstDEI	CTNAG	2 cut(s)	857, 984
BstENI	CCTNNNNNAGG	1 cut(s)	130
BstF5I	GGATG	1 cut(s)	961
BstHHI	GCGC	1 cut(s)	772
BstKTI	GATC	4 cut(s)	160, 359, 519, 852
BstMAI	GTCTC	2 cut(s)	241, 541
BstMBI	GATC	4 cut(s)	157, 356, 516, 849
BstMWI	GCNNNNNNNGC	5 cut(s)	209, 224, 257, 741, 776
BstNI	CCWGG	1 cut(s)	381
BstSCI	CCNGG	2 cut(s)	379, 607
BstSFI	CTRYAG	1 cut(s)	74
BstSLI	GKGCMC	1 cut(s)	527
BstSNI	TACGTA	1 cut(s)	391
BstV1I	GCAGC	6 cut(s)	10, 17, 32, 109, 574, 759
BstX2I	RGATCY	1 cut(s)	356
BstXI	CCANNNNNNTGG	1 cut(s)	49
BstYI	RGATCY	1 cut(s)	356
BsuRI	GGCC	1 cut(s)	525
BtsCI	GGATG	1 cut(s)	961
BtsIMutI	CAGTG	1 cut(s)	854
Cac8I	GCNNGC	5 cut(s)	18, 74, 120, 205, 777
CciI	TCATGA	1 cut(s)	486
CfoI	GCGC	1 cut(s)	772
Cfr10I	RCCGGY	1 cut(s)	749
Cfr13I	GGNCC	5 cut(s)	66, 84, 523, 524, 724
CseI	GACGC	1 cut(s)	645
Csp6I	GTAC	2 cut(s)	388, 695
CspAI	ACCGGT	1 cut(s)	749
CspCI	CAANNNNNGTGG	2 cut(s)	181, 216
CviAII	CATG	2 cut(s)	304, 487
CviQI	GTAC	2 cut(s)	388, 695
DdeI	CTNAG	2 cut(s)	857, 984
DpnI	GATC	4 cut(s)	159, 358, 518, 851
DpnII	GATC	4 cut(s)	157, 356, 516, 849
DraIII	CACNNNGTG	1 cut(s)	860
Eam1104I	CTCTTC	2 cut(s)	133, 781
EarI	CTCTTC	2 cut(s)	133, 781
EciI	GGCGGA	1 cut(s)	214
Eco105I	TACGTA	1 cut(s)	391
Eco130I	CCWWGG	4 cut(s)	99, 810, 942, 967
Eco24I	GRGCYC	2 cut(s)	262, 527
Eco31I	GGTCTC	1 cut(s)	541
Eco47I	GGWCC	3 cut(s)	66, 84, 724
EcoNI	CCTNNNNNAGG	1 cut(s)	130
EcoO109I	RGGNCCY	3 cut(s)	84, 523, 524
EcoRII	CCWGG	1 cut(s)	379
EcoT14I	CCWWGG	4 cut(s)	99, 810, 942, 967
EcoT38I	GRGCYC	2 cut(s)	262, 527
ErhI	CCWWGG	4 cut(s)	99, 810, 942, 967
Esp3I	CGTCTC	1 cut(s)	241
FaeI	CATG	2 cut(s)	307, 490
FaiI	YATR	8 cut(s)	14, 35, 301, 305, 488, 703, 756, 981
FatI	CATG	2 cut(s)	303, 486
Fnu4HI	GCNGC	7 cut(s)	6, 21, 24, 123, 588, 773, 886
FokI	GGATG	1 cut(s)	968
FriOI	GRGCYC	2 cut(s)	262, 527
Fsp4HI	GCNGC	7 cut(s)	6, 21, 24, 123, 588, 773, 886
FspBI	CTAG	3 cut(s)	63, 132, 410
GlaI	GCGC	1 cut(s)	771
GluI	GCNGC	7 cut(s)	6, 21, 24, 123, 588, 773, 886
GsuI	CTGGAG	2 cut(s)	261, 801
HaeIII	GGCC	1 cut(s)	525
HapII	CCGG	5 cut(s)	321, 609, 681, 750, 878
HgaI	GACGC	1 cut(s)	645
HhaI	GCGC	1 cut(s)	772
Hin1I	GRCGYC	1 cut(s)	656
Hin1II	CATG	2 cut(s)	307, 490
Hin6I	GCGC	1 cut(s)	770
HinP1I	GCGC	1 cut(s)	770
HinfI	GANTC	1 cut(s)	490
HpaII	CCGG	5 cut(s)	321, 609, 681, 750, 878
HphI	GGTGA	3 cut(s)	626, 628, 670
Hpy166II	GTNNAC	1 cut(s)	636
Hpy188I	TCNGA	2 cut(s)	361, 925
Hpy188III	TCNNGA	5 cut(s)	240, 289, 410, 487, 660
Hpy8I	GTNNAC	1 cut(s)	636
Hpy99I	CGWCG	2 cut(s)	236, 284
HpyAV	CCTTC	5 cut(s)	248, 307, 382, 433, 930
HpyCH4III	ACNGT	3 cut(s)	430, 553, 598
HpyCH4IV	ACGT	1 cut(s)	390
HpyCH4V	TGCA	5 cut(s)	16, 37, 76, 151, 173
HpyF10VI	GCNNNNNNNGC	5 cut(s)	209, 224, 257, 741, 776
HpyF3I	CTNAG	2 cut(s)	857, 984
HpySE526I	ACGT	1 cut(s)	390
Hsp92I	GRCGYC	1 cut(s)	656
Hsp92II	CATG	2 cut(s)	307, 490
HspAI	GCGC	1 cut(s)	770
KpnI	GGTACC	1 cut(s)	698
Kzo9I	GATC	4 cut(s)	157, 356, 516, 849
LmnI	GCTCC	7 cut(s)	115, 242, 248, 257, 609, 716, 749
Lsp1109I	GCAGC	6 cut(s)	10, 17, 32, 109, 574, 759
LweI	GCATC	1 cut(s)	178
MaeI	CTAG	3 cut(s)	63, 132, 410
MaeII	ACGT	1 cut(s)	390
MaeIII	GTNAC	2 cut(s)	592, 862
MalI	GATC	4 cut(s)	159, 358, 518, 851
MbiI	CCGCTC	1 cut(s)	885
MboI	GATC	4 cut(s)	157, 356, 516, 849
MboII	GAAGA	3 cut(s)	120, 798, 859
MflI	RGATCY	1 cut(s)	356
MhlI	GDGCHC	2 cut(s)	262, 527
MluCI	AATT	1 cut(s)	576
MlyI	GAGTC	1 cut(s)	484
MmeI	TCCRAC	1 cut(s)	93
MseI	TTAA	1 cut(s)	162
MslI	CAYNNNNRTG	4 cut(s)	47, 178, 180, 308
MspA1I	CMGCKG	3 cut(s)	23, 122, 779
MspCI	CTTAAG	1 cut(s)	161
MspI	CCGG	5 cut(s)	321, 609, 681, 750, 878
MspR9I	CCNGG	2 cut(s)	381, 609
Mva1269I	GAATGC	1 cut(s)	912
MvaI	CCWGG	1 cut(s)	381
MwoI	GCNNNNNNNGC	5 cut(s)	209, 224, 257, 741, 776
NciI	CCSGG	1 cut(s)	609
NdeII	GATC	4 cut(s)	157, 356, 516, 849
NlaIII	CATG	2 cut(s)	307, 490
NmuCI	GTSAC	1 cut(s)	862
OliI	CACNNNNGTG	3 cut(s)	47, 178, 180
PagI	TCATGA	1 cut(s)	486
PctI	GAATGC	1 cut(s)	912
PinAI	ACCGGT	1 cut(s)	749
PkrI	GCNGC	7 cut(s)	7, 22, 25, 124, 589, 774, 887
PleI	GAGTC	1 cut(s)	484
PpsI	GAGTC	1 cut(s)	484
Ppu21I	YACGTR	1 cut(s)	391
PpuMI	RGGWCCY	1 cut(s)	84
Psp5II	RGGWCCY	1 cut(s)	84
Psp6I	CCWGG	1 cut(s)	379
PspGI	CCWGG	1 cut(s)	379
PspOMI	GGGCCC	1 cut(s)	523
PspPI	GGNCC	5 cut(s)	66, 84, 523, 524, 724
PspPPI	RGGWCCY	1 cut(s)	84
PstI	CTGCAG	1 cut(s)	78
PsuI	RGATCY	1 cut(s)	356
PvuII	CAGCTG	3 cut(s)	23, 122, 779
RsaI	GTAC	2 cut(s)	389, 696
RsaNI	GTAC	2 cut(s)	388, 695
RseI	CAYNNNNRTG	4 cut(s)	47, 178, 180, 308
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	7 cut(s)	6, 21, 24, 123, 588, 773, 886
Sau3AI	GATC	4 cut(s)	157, 356, 516, 849
Sau96I	GGNCC	5 cut(s)	66, 84, 523, 524, 724
SchI	GAGTC	1 cut(s)	484
ScrFI	CCNGG	2 cut(s)	381, 609
SduI	GDGCHC	2 cut(s)	262, 527
SfaNI	GCATC	1 cut(s)	178
SfcI	CTRYAG	1 cut(s)	74
SinI	GGWCC	3 cut(s)	66, 84, 724
SmiMI	CAYNNNNRTG	4 cut(s)	47, 178, 180, 308
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
SnaBI	TACGTA	1 cut(s)	391
Sse9I	AATT	1 cut(s)	576
SsiI	CCGC	2 cut(s)	225, 885
SspMI	CTAG	3 cut(s)	63, 132, 410
StyD4I	CCNGG	2 cut(s)	379, 607
StyI	CCWWGG	4 cut(s)	99, 810, 942, 967
TaaI	ACNGT	3 cut(s)	430, 553, 598
TaiI	ACGT	1 cut(s)	393
TaqI	TCGA	3 cut(s)	519, 531, 561
TasI	AATT	1 cut(s)	576
TauI	GCSGC	1 cut(s)	888
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TscAI	CASTG	1 cut(s)	861
TseFI	GTSAC	1 cut(s)	862
TseI	GCWGC	6 cut(s)	5, 20, 23, 122, 587, 772
Tsp45I	GTSAC	1 cut(s)	862
TspDTI	ATGAA	1 cut(s)	822
TspRI	CASTG	1 cut(s)	861
Vha464I	CTTAAG	1 cut(s)	161
VpaK11BI	GGWCC	3 cut(s)	66, 84, 724
XagI	CCTNNNNNAGG	1 cut(s)	130
XbaI	TCTAGA	1 cut(s)	409
XspI	CTAG	3 cut(s)	63, 132, 410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.