Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003573

Physical Location & Seq

Genomic Coordinates Reverse (-)

22151345 .. 22152862

Gene Structure 1518 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G213800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGGTTTTGATGATCATCCTTGTAACACAGGCCTTGTCTTAGGGTTAGGTCTCACAACATCGTCCCCTCAAGAGAGTACTTCTCCACCAAAGGCTCATAATCCATCAAGGTTTGCAAATAAGCCCTCCCCAAATTCTGCTCCCACAAGTGCTACTTTTGAGCCATCTTTAACTTTGGGTCTTCCTGGTGAGCCATATCATCAATTAGTGGCCTCCAATTACAAAGGTGGTGGTAATTCTCATGAGGAAGCAATAGATTTGTATAGGCAAGCTTCCTCACCTCATAGTCATAGCGCGGTCTCTTCCTTCTCTAGTGGTAGAGTGGTCAAAAGAGAGAGAGACCTTAGTAGTGAGGAGGTTGAGGTAGAGAAAGTCTCTTCAAGAGTGAGCGATGAAGATGAAGATGGCTCTAATGCTAGAAAGAAGCTTAGGCTCACCAAGGAACAGTCTGCCCTCTTAGAAGAAAGCTTCAAACAACATAGCACTCTCAACCCAAAGCAAAAGCAAGCTTTAGCCAGGCAGTTAAATTTGAGGCCAAGACAAGTGGAAGTATGGTTCCAAAATAGGAGAGCCAGGACAAAGCTTAAGCAAACTGAGGTAGATTGTGAGTTCTTGAAGAAGTGCTGCGAGACGCTAACGGATGAGAACCGGAGGCTACAAAAAGAGCTACAAGAACTCAAGGCACTCAAGCTAAGCCAACCTTTGTACATGCATATGCCGGCAGCCACCCTCACTATGTGTCCTTCTTGTGAAAGGATTGGAGGTGTGGGCAGTGAGGGAGCTTCCAAGAGCCCATTTTCTATGGCTCCAAAGCCTCACTTCTATAATCACTTCACCAATCCCTCAGCAGCTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009738 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033993 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

286

Amino Acids

31.54

Weight (kDa)

8.62

Isoelectric Point (pI)

65.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22800 AT4G37790
fragaria_vesca	FvH4_1g18530 FvH4_2g32410
malus_domestica	MD02G1192800.v1.1 MD08G1075400.v1.1 MD08G1075500.v1.1 MD15G1062900.v1.1 MD15G1302900.v1.1
prunus_persica	Prupe.1G416800_v2.0.a1 Prupe.6G213800_v2.0.a1
pyrus_communis	pycom02g15660 pycom08g06230 pycom15g05950 pycom15g26620
rosa_chinensis	RchiOBHm_Chr2g0109191 RchiOBHm_Chr6g0310291
rosa_laevigata	RLG00000010494 RLG00000017725
rosa_multiflora	Rmu_sc0002348.1_g000019 Rmu_sc0002348.1_g000020 Rmu_sc0009436.1_g000008
rosa_roxburghii	Rroxscaffold_2G00134400 Rroxscaffold_7G00158690
rosa_rugosa	Rorug02G0158300 Rorug06G0378500
rosa_samantha	Rh2AG209900 Rh2BG220300 Rh2CG212300 Rh2DG216100 Rh6AG492900 Rh6BG502500 Rh6CG507500 Rh6DG493600
rosa_wichuraiana	Rw6G042890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	296
AciI	CCGC	1 cut(s)	296
AcsI	RAATTY	2 cut(s)	133, 526
AdeI	CACNNNGTG	1 cut(s)	738
AfaI	GTAC	2 cut(s)	79, 707
AflII	CTTAAG	1 cut(s)	584
AgsI	TTSAA	3 cut(s)	381, 472, 616
AjnI	CCWGG	3 cut(s)	184, 515, 572
AloI	GAACNNNNNNTCC	2 cut(s)	539, 571
AluBI	AGCT	9 cut(s)	272, 427, 468, 509, 583, 667, 691, 782, 851
AluI	AGCT	9 cut(s)	272, 427, 468, 509, 583, 667, 691, 782, 851
Alw26I	GTCTC	5 cut(s)	56, 304, 333, 379, 623
AoxI	GGCC	3 cut(s)	31, 210, 533
ApeKI	GCWGC	3 cut(s)	624, 722, 848
ApoI	RAATTY	2 cut(s)	133, 526
AspLEI	GCGC	1 cut(s)	296
AsuHPI	GGTGA	4 cut(s)	200, 270, 427, 826
BanII	GRGCYC	1 cut(s)	794
BbsI	GAAGAC	1 cut(s)	173
BbvCI	CCTCAGC	1 cut(s)	844
BbvI	GCAGC	2 cut(s)	611, 734
BccI	CCATC	3 cut(s)	112, 172, 398
BciT130I	CCWGG	3 cut(s)	186, 517, 574
BclI	TGATCA	1 cut(s)	13
BcoDI	GTCTC	5 cut(s)	56, 304, 333, 379, 623
BfaI	CTAG	2 cut(s)	312, 417
BfrI	CTTAAG	1 cut(s)	584
BisI	GCNGC	3 cut(s)	625, 723, 849
BlpI	GCTNAGC	1 cut(s)	692
BlsI	GCNGC	3 cut(s)	626, 724, 850
BmcAI	AGTACT	1 cut(s)	79
Bme1390I	CCNGG	3 cut(s)	186, 517, 574
BmiI	GGNNCC	2 cut(s)	557, 807
BmrFI	CCNGG	3 cut(s)	186, 517, 574
BpiI	GAAGAC	1 cut(s)	173
BplI	GAGNNNNNCTC	4 cut(s)	67, 99, 359, 391
Bpu10I	CCTNAGC	2 cut(s)	428, 844
Bpu1102I	GCTNAGC	1 cut(s)	692
BpuEI	CTTGAG	3 cut(s)	54, 662, 671
BsaBI	GATNNNNATC	1 cut(s)	15
BsaI	GGTCTC	3 cut(s)	56, 304, 333
BsaJI	CCNNGG	1 cut(s)	438
BsaWI	WCCGGW	1 cut(s)	648
Bse118I	RCCGGY	1 cut(s)	718
Bse8I	GATNNNNATC	1 cut(s)	15
BseBI	CCWGG	3 cut(s)	186, 517, 574
BseDI	CCNNGG	1 cut(s)	438
BseGI	GGATG	2 cut(s)	16, 646
BseJI	GATNNNNATC	1 cut(s)	15
BseMII	CTCAG	2 cut(s)	585, 858
BseRI	GAGGAG	1 cut(s)	368
BseXI	GCAGC	2 cut(s)	611, 734
Bsh1236I	CGCG	1 cut(s)	296
BshFI	GGCC	3 cut(s)	33, 212, 535
BsiSI	CCGG	2 cut(s)	649, 719
BslFI	GGGAC	1 cut(s)	49
BsmAI	GTCTC	5 cut(s)	56, 304, 333, 379, 623
BsmBI	CGTCTC	1 cut(s)	623
BsmFI	GGGAC	1 cut(s)	49
BsnI	GGCC	3 cut(s)	33, 212, 535
Bso31I	GGTCTC	3 cut(s)	56, 304, 333
Bsp1286I	GDGCHC	1 cut(s)	794
Bsp1407I	TGTACA	1 cut(s)	705
Bsp143I	GATC	1 cut(s)	13
Bsp1720I	GCTNAGC	1 cut(s)	692
BspACI	CCGC	1 cut(s)	296
BspANI	GGCC	3 cut(s)	33, 212, 535
BspCNI	CTCAG	2 cut(s)	586, 857
BspFNI	CGCG	1 cut(s)	296
BspHI	TCATGA	1 cut(s)	241
BspLI	GGNNCC	2 cut(s)	557, 807
BspTI	CTTAAG	1 cut(s)	584
BspTNI	GGTCTC	3 cut(s)	56, 304, 333
BsrFI	RCCGGY	1 cut(s)	718
BsrGI	TGTACA	1 cut(s)	705
BssAI	RCCGGY	1 cut(s)	718
BssECI	CCNNGG	1 cut(s)	438
BssMI	GATC	1 cut(s)	13
BssT1I	CCWWGG	1 cut(s)	438
Bst2UI	CCWGG	3 cut(s)	186, 517, 574
Bst4CI	ACNGT	1 cut(s)	447
Bst6I	CTCTTC	2 cut(s)	307, 382
BstAFI	CTTAAG	1 cut(s)	584
BstAUI	TGTACA	1 cut(s)	705
BstC8I	GCNNGC	3 cut(s)	270, 507, 720
BstDEI	CTNAG	7 cut(s)	40, 344, 428, 457, 594, 692, 844
BstF5I	GGATG	2 cut(s)	16, 646
BstFNI	CGCG	1 cut(s)	296
BstHHI	GCGC	1 cut(s)	296
BstKTI	GATC	1 cut(s)	16
BstMAI	GTCTC	5 cut(s)	56, 304, 333, 379, 623
BstMBI	GATC	1 cut(s)	13
BstNI	CCWGG	3 cut(s)	186, 517, 574
BstNSI	RCATGY	1 cut(s)	712
BstSCI	CCNGG	3 cut(s)	184, 515, 572
BstUI	CGCG	1 cut(s)	296
BstV1I	GCAGC	2 cut(s)	611, 734
BstV2I	GAAGAC	1 cut(s)	173
BsuRI	GGCC	3 cut(s)	33, 212, 535
BtgZI	GCGATG	1 cut(s)	405
BtsCI	GGATG	2 cut(s)	16, 646
BtsI	GCAGTG	1 cut(s)	778
BtsIMutI	CAGTG	1 cut(s)	778
Cac8I	GCNNGC	3 cut(s)	270, 507, 720
CciI	TCATGA	1 cut(s)	241
CfoI	GCGC	1 cut(s)	296
Cfr10I	RCCGGY	1 cut(s)	718
CseI	GACGC	1 cut(s)	640
Csp6I	GTAC	2 cut(s)	78, 706
CspCI	CAANNNNNGTGG	4 cut(s)	211, 246, 525, 560
CviAII	CATG	2 cut(s)	242, 709
CviQI	GTAC	2 cut(s)	78, 706
DdeI	CTNAG	7 cut(s)	40, 344, 428, 457, 594, 692, 844
DpnI	GATC	1 cut(s)	15
DpnII	GATC	1 cut(s)	13
DraIII	CACNNNGTG	1 cut(s)	738
Eam1104I	CTCTTC	2 cut(s)	307, 382
EarI	CTCTTC	2 cut(s)	307, 382
Eco130I	CCWWGG	1 cut(s)	438
Eco147I	AGGCCT	1 cut(s)	33
Eco24I	GRGCYC	1 cut(s)	794
Eco31I	GGTCTC	3 cut(s)	56, 304, 333
EcoRII	CCWGG	3 cut(s)	184, 515, 572
EcoT14I	CCWWGG	1 cut(s)	438
EcoT22I	ATGCAT	1 cut(s)	714
EcoT38I	GRGCYC	1 cut(s)	794
ErhI	CCWWGG	1 cut(s)	438
Esp3I	CGTCTC	1 cut(s)	623
FaeI	CATG	2 cut(s)	245, 712
FalI	AAGNNNNNCTT	6 cut(s)	139, 171, 685, 717, 803, 835
FaqI	GGGAC	1 cut(s)	49
FatI	CATG	2 cut(s)	241, 708
FauNDI	CATATG	1 cut(s)	714
FbaI	TGATCA	1 cut(s)	13
Fnu4HI	GCNGC	3 cut(s)	625, 723, 849
FokI	GGATG	2 cut(s)	3, 653
FriOI	GRGCYC	1 cut(s)	794
Fsp4HI	GCNGC	3 cut(s)	625, 723, 849
FspBI	CTAG	2 cut(s)	312, 417
GlaI	GCGC	1 cut(s)	295
GluI	GCNGC	3 cut(s)	625, 723, 849
HaeIII	GGCC	3 cut(s)	33, 212, 535
HapII	CCGG	2 cut(s)	649, 719
HgaI	GACGC	1 cut(s)	640
HhaI	GCGC	1 cut(s)	296
Hin1II	CATG	2 cut(s)	245, 712
Hin6I	GCGC	1 cut(s)	294
HinP1I	GCGC	1 cut(s)	294
HindIII	AAGCTT	5 cut(s)	270, 425, 466, 507, 581
HpaII	CCGG	2 cut(s)	649, 719
HphI	GGTGA	4 cut(s)	200, 270, 427, 826
Hpy188III	TCNNGA	4 cut(s)	71, 242, 381, 613
HpyAV	CCTTC	2 cut(s)	316, 753
HpyCH4III	ACNGT	1 cut(s)	447
HpyCH4V	TGCA	2 cut(s)	116, 712
HpyF3I	CTNAG	7 cut(s)	40, 344, 428, 457, 594, 692, 844
Hsp92II	CATG	2 cut(s)	245, 712
HspAI	GCGC	1 cut(s)	294
KroI	GCCGGC	1 cut(s)	718
KroNI	GCCGGC	1 cut(s)	720
Ksp22I	TGATCA	1 cut(s)	13
Kzo9I	GATC	1 cut(s)	13
LmnI	GCTCC	3 cut(s)	145, 779, 811
LpnPI	CCDG	9 cut(s)	15, 171, 198, 502, 529, 559, 586, 662, 732
Lsp1109I	GCAGC	2 cut(s)	611, 734
MaeI	CTAG	2 cut(s)	312, 417
MaeIII	GTNAC	1 cut(s)	23
MalI	GATC	1 cut(s)	15
MboI	GATC	1 cut(s)	13
MboII	GAAGA	7 cut(s)	173, 294, 369, 407, 413, 473, 628
MhlI	GDGCHC	1 cut(s)	794
MluCI	AATT	5 cut(s)	133, 203, 217, 235, 526
Mph1103I	ATGCAT	1 cut(s)	714
MroNI	GCCGGC	1 cut(s)	718
MseI	TTAA	4 cut(s)	170, 524, 585, 856
MslI	CAYNNNNRTG	1 cut(s)	713
MspCI	CTTAAG	1 cut(s)	584
MspI	CCGG	2 cut(s)	649, 719
MspR9I	CCNGG	3 cut(s)	186, 517, 574
MvaI	CCWGG	3 cut(s)	186, 517, 574
MvnI	CGCG	1 cut(s)	296
NaeI	GCCGGC	1 cut(s)	720
NdeI	CATATG	1 cut(s)	714
NdeII	GATC	1 cut(s)	13
NgoMIV	GCCGGC	1 cut(s)	718
NlaIII	CATG	2 cut(s)	245, 712
NlaIV	GGNNCC	2 cut(s)	557, 807
NsiI	ATGCAT	1 cut(s)	714
NspI	RCATGY	1 cut(s)	712
PagI	TCATGA	1 cut(s)	241
PceI	AGGCCT	1 cut(s)	33
PdiI	GCCGGC	1 cut(s)	720
PkrI	GCNGC	3 cut(s)	626, 724, 850
Psp6I	CCWGG	3 cut(s)	184, 515, 572
PspGI	CCWGG	3 cut(s)	184, 515, 572
PspN4I	GGNNCC	2 cut(s)	557, 807
RsaI	GTAC	2 cut(s)	79, 707
RsaNI	GTAC	2 cut(s)	78, 706
RseI	CAYNNNNRTG	1 cut(s)	713
SaqAI	TTAA	4 cut(s)	170, 524, 585, 856
SatI	GCNGC	3 cut(s)	625, 723, 849
Sau3AI	GATC	1 cut(s)	13
ScaI	AGTACT	1 cut(s)	79
ScrFI	CCNGG	3 cut(s)	186, 517, 574
SduI	GDGCHC	1 cut(s)	794
SmiMI	CAYNNNNRTG	1 cut(s)	713
SmlI	CTYRAG	4 cut(s)	69, 584, 677, 686
SmoI	CTYRAG	4 cut(s)	69, 584, 677, 686
Sse9I	AATT	5 cut(s)	133, 203, 217, 235, 526
SseBI	AGGCCT	1 cut(s)	33
SsiI	CCGC	1 cut(s)	296
SspMI	CTAG	2 cut(s)	312, 417
StuI	AGGCCT	1 cut(s)	33
StyD4I	CCNGG	3 cut(s)	184, 515, 572
StyI	CCWWGG	1 cut(s)	438
TaaI	ACNGT	1 cut(s)	447
TasI	AATT	5 cut(s)	133, 203, 217, 235, 526
TatI	WGTACW	2 cut(s)	77, 705
Tru1I	TTAA	4 cut(s)	170, 524, 585, 856
Tru9I	TTAA	4 cut(s)	170, 524, 585, 856
TscAI	CASTG	1 cut(s)	778
TseI	GCWGC	3 cut(s)	624, 722, 848
TspDTI	ATGAA	2 cut(s)	408, 414
TspGWI	ACGGA	1 cut(s)	653
TspRI	CASTG	1 cut(s)	778
Vha464I	CTTAAG	1 cut(s)	584
XapI	RAATTY	2 cut(s)	133, 526
XceI	RCATGY	1 cut(s)	712
XspI	CTAG	2 cut(s)	312, 417
ZrmI	AGTACT	1 cut(s)	79
Zsp2I	ATGCAT	1 cut(s)	714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.