Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0003573

Physical Location & Seq

Genomic Coordinates Reverse (-)

6137615 .. 6138911

Gene Structure 1297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1075500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGGTTTTGATCATGAAGCTTGTAACACTGGCCTTGGACTCAGCCTAGGTTGTCAAGGTCCATCTTCCGGGGCTTCGAAGATCGAGGCCGCCAAATCGGATGATCATTTGCTCCAAGTAGTATATGTGCAAGCACAAGAACGGGCCTCTTCTCCCTGCAGCGGCGCCGTTTCTTCGTTCTCCAACTCATCTAGTTTCAAGAGGGACAGAGGTTTGGGTGTTGAAGAAATAGAGGGAGAGGTAGAAGAAGATAGAGTAGTAGTGAATATCACTACTTCATCAAGAGTAAGCGACGAATTATATGATCAAGATCAAGATCACGAGGGCAGTCCTAGAAAGAAACTCAGACTTACAAAAGAACAATCTGCCACTTTAGAGGACAGCTTCAGAGAGCACACTACTCTCAATCCAAAACAAAAACAAGAACTGGCAAGAAAGCTAAACTTACGCCCACGACAAGTTGAAGTCTGGTTCCAAAACAGGAGGGCTAGGACCAAGTTGAAGCAAACAGAAGCAGAGTGCGAGTTGTTGAAACAATGTTGTGAAACATTGAAAGATGAGAACAGAAGGCTACACAAGGAGTTGCAAGAGCTCAAATTAATGAAACATACAGCAACAGCAGCAGCACCCCTTTACATGAAGTTTCCAACTGCCACTCTCACCATGTGTCCCTCCTGTGAGAAAATCTGCAACGGCGGCGATCATTATAATCATAATCACGAGTCATCGACAAGTCCATTTTTAGTCGGGTCGAATAAGACTCACTTGATCTTCAACCCCTACAGCACTCATCCATCTACAGCTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

270

Amino Acids

30.11

Weight (kDa)

6.6

Isoelectric Point (pI)

60.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	112 - 166	1.3e-16	Homeodomain
HALZ	PF02183	168 - 201	3.7e-08	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22800 AT4G37790
fragaria_vesca	FvH4_1g18530 FvH4_2g32410
malus_domestica	MD02G1192800.v1.1 MD08G1075400.v1.1 MD08G1075500.v1.1 MD15G1062900.v1.1 MD15G1302900.v1.1
prunus_persica	Prupe.1G416800_v2.0.a1 Prupe.6G213800_v2.0.a1
pyrus_communis	pycom02g15660 pycom08g06230 pycom15g05950 pycom15g26620
rosa_chinensis	RchiOBHm_Chr2g0109191 RchiOBHm_Chr6g0310291
rosa_laevigata	RLG00000010494 RLG00000017725
rosa_multiflora	Rmu_sc0002348.1_g000019 Rmu_sc0002348.1_g000020 Rmu_sc0009436.1_g000008
rosa_roxburghii	Rroxscaffold_2G00134400 Rroxscaffold_7G00158690
rosa_rugosa	Rorug02G0158300 Rorug06G0378500
rosa_samantha	Rh2AG209900 Rh2BG220300 Rh2CG212300 Rh2DG216100 Rh6AG492900 Rh6BG502500 Rh6CG507500 Rh6DG493600
rosa_wichuraiana	Rw6G042890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	708
AccB1I	GGYRCC	1 cut(s)	164
AciI	CCGC	3 cut(s)	90, 162, 696
AcuI	CTGAAG	1 cut(s)	370
AcyI	GRCGYC	1 cut(s)	165
AdeI	CACNNNGTG	1 cut(s)	666
AfiI	CCNNNNNNNGG	2 cut(s)	68, 161
AgsI	TTSAA	7 cut(s)	199, 224, 464, 502, 532, 553, 775
AluBI	AGCT	5 cut(s)	20, 384, 439, 592, 803
AluI	AGCT	5 cut(s)	20, 384, 439, 592, 803
Alw21I	GWGCWC	2 cut(s)	396, 594
AoxI	GGCC	3 cut(s)	31, 87, 144
ApeKI	GCWGC	3 cut(s)	159, 620, 623
AseI	ATTAAT	1 cut(s)	599
AspA2I	CCTAGG	1 cut(s)	46
AspLEI	GCGC	1 cut(s)	167
AspS9I	GGNCC	3 cut(s)	59, 144, 492
AsuC2I	CCSGG	1 cut(s)	70
AsuHPI	GGTGA	1 cut(s)	652
AsuII	TTCGAA	1 cut(s)	77
AvaII	GGWCC	2 cut(s)	59, 492
AvrII	CCTAGG	1 cut(s)	46
BanI	GGYRCC	1 cut(s)	164
BanII	GRGCYC	1 cut(s)	594
BauI	CACGAG	2 cut(s)	320, 719
Bbv12I	GWGCWC	2 cut(s)	396, 594
BbvI	GCAGC	3 cut(s)	171, 632, 635
BccI	CCATC	2 cut(s)	70, 802
BceAI	ACGGC	2 cut(s)	152, 709
BclI	TGATCA	3 cut(s)	10, 103, 304
BcnI	CCSGG	1 cut(s)	70
BfaI	CTAG	5 cut(s)	47, 192, 333, 489, 808
BfmI	CTRYAG	3 cut(s)	157, 781, 798
BfoI	RGCGCY	1 cut(s)	168
BisI	GCNGC	6 cut(s)	90, 160, 163, 621, 624, 697
BlnI	CCTAGG	1 cut(s)	46
BlsI	GCNGC	6 cut(s)	91, 161, 164, 622, 625, 698
Bme1390I	CCNGG	1 cut(s)	70
Bme18I	GGWCC	2 cut(s)	59, 492
BmgT120I	GGNCC	3 cut(s)	59, 144, 492
BmiI	GGNNCC	2 cut(s)	166, 473
BmrFI	CCNGG	1 cut(s)	70
Bpu14I	TTCGAA	1 cut(s)	77
BpuMI	CCSGG	1 cut(s)	70
BsaBI	GATNNNNATC	2 cut(s)	309, 315
BsaHI	GRCGYC	1 cut(s)	165
BsaJI	CCNNGG	3 cut(s)	34, 46, 69
Bsc4I	CCNNNNNNNGG	2 cut(s)	68, 161
Bse1I	ACTGG	2 cut(s)	34, 432
Bse8I	GATNNNNATC	2 cut(s)	309, 315
BseDI	CCNNGG	3 cut(s)	34, 46, 69
BseGI	GGATG	2 cut(s)	106, 790
BseJI	GATNNNNATC	2 cut(s)	309, 315
BseLI	CCNNNNNNNGG	2 cut(s)	68, 161
BseMII	CTCAG	2 cut(s)	55, 358
BseNI	ACTGG	2 cut(s)	34, 432
BseXI	GCAGC	3 cut(s)	171, 632, 635
BshFI	GGCC	3 cut(s)	33, 89, 146
BshNI	GGYRCC	1 cut(s)	164
BsiHKAI	GWGCWC	2 cut(s)	396, 594
BsiSI	CCGG	1 cut(s)	69
BslFI	GGGAC	2 cut(s)	218, 654
BslI	CCNNNNNNNGG	2 cut(s)	68, 161
BsmFI	GGGAC	2 cut(s)	218, 654
BsnI	GGCC	3 cut(s)	33, 89, 146
Bsp119I	TTCGAA	1 cut(s)	77
Bsp1286I	GDGCHC	2 cut(s)	396, 594
Bsp143I	GATC	8 cut(s)	10, 81, 103, 304, 310, 316, 700, 768
BspACI	CCGC	3 cut(s)	90, 162, 696
BspANI	GGCC	3 cut(s)	33, 89, 146
BspCNI	CTCAG	2 cut(s)	54, 357
BspHI	TCATGA	1 cut(s)	13
BspLI	GGNNCC	2 cut(s)	166, 473
BspMAI	CTGCAG	1 cut(s)	161
BspT104I	TTCGAA	1 cut(s)	77
BspT107I	GGYRCC	1 cut(s)	164
BsrI	ACTGG	2 cut(s)	34, 432
BssECI	CCNNGG	3 cut(s)	34, 46, 69
BssMI	GATC	8 cut(s)	10, 81, 103, 304, 310, 316, 700, 768
BssNI	GRCGYC	1 cut(s)	165
BssSI	CACGAG	2 cut(s)	320, 719
BssT1I	CCWWGG	2 cut(s)	34, 46
Bst2BI	CACGAG	2 cut(s)	320, 719
Bst6I	CTCTTC	1 cut(s)	154
BstACI	GRCGYC	1 cut(s)	165
BstBI	TTCGAA	1 cut(s)	77
BstC8I	GCNNGC	2 cut(s)	132, 805
BstDEI	CTNAG	2 cut(s)	41, 344
BstF5I	GGATG	2 cut(s)	106, 790
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	167
BstKTI	GATC	8 cut(s)	13, 84, 106, 307, 313, 319, 703, 771
BstMBI	GATC	8 cut(s)	10, 81, 103, 304, 310, 316, 700, 768
BstMWI	GCNNNNNNNGC	2 cut(s)	620, 696
BstSCI	CCNGG	1 cut(s)	68
BstSFI	CTRYAG	3 cut(s)	157, 781, 798
BstV1I	GCAGC	3 cut(s)	171, 632, 635
BsuRI	GGCC	3 cut(s)	33, 89, 146
BtsCI	GGATG	2 cut(s)	106, 790
BtsIMutI	CAGTG	1 cut(s)	27
Cac8I	GCNNGC	2 cut(s)	132, 805
CciI	TCATGA	1 cut(s)	13
CfoI	GCGC	1 cut(s)	167
Cfr13I	GGNCC	3 cut(s)	59, 144, 492
CviAII	CATG	3 cut(s)	14, 637, 664
DdeI	CTNAG	2 cut(s)	41, 344
DinI	GGCGCC	1 cut(s)	166
DpnI	GATC	8 cut(s)	12, 83, 105, 306, 312, 318, 702, 770
DpnII	GATC	8 cut(s)	10, 81, 103, 304, 310, 316, 700, 768
DraIII	CACNNNGTG	1 cut(s)	666
Eam1104I	CTCTTC	1 cut(s)	154
EarI	CTCTTC	1 cut(s)	154
Ecl136II	GAGCTC	1 cut(s)	592
Eco130I	CCWWGG	2 cut(s)	34, 46
Eco24I	GRGCYC	1 cut(s)	594
Eco47I	GGWCC	2 cut(s)	59, 492
Eco53kI	GAGCTC	1 cut(s)	592
Eco57I	CTGAAG	1 cut(s)	370
EcoICRI	GAGCTC	1 cut(s)	592
EcoT14I	CCWWGG	2 cut(s)	34, 46
EcoT38I	GRGCYC	1 cut(s)	594
EgeI	GGCGCC	1 cut(s)	166
EheI	GGCGCC	1 cut(s)	166
ErhI	CCWWGG	2 cut(s)	34, 46
FaeI	CATG	3 cut(s)	17, 640, 667
FalI	AAGNNNNNCTT	4 cut(s)	428, 460, 749, 781
FaqI	GGGAC	2 cut(s)	218, 654
FatI	CATG	3 cut(s)	13, 636, 663
FbaI	TGATCA	3 cut(s)	10, 103, 304
Fnu4HI	GCNGC	6 cut(s)	90, 160, 163, 621, 624, 697
FokI	GGATG	2 cut(s)	113, 777
FriOI	GRGCYC	1 cut(s)	594
Fsp4HI	GCNGC	6 cut(s)	90, 160, 163, 621, 624, 697
FspBI	CTAG	5 cut(s)	47, 192, 333, 489, 808
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	6 cut(s)	90, 160, 163, 621, 624, 697
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	3 cut(s)	33, 89, 146
HapII	CCGG	1 cut(s)	69
HhaI	GCGC	1 cut(s)	167
Hin1I	GRCGYC	1 cut(s)	165
Hin1II	CATG	3 cut(s)	17, 640, 667
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HindIII	AAGCTT	1 cut(s)	18
HinfI	GANTC	3 cut(s)	39, 722, 760
HpaII	CCGG	1 cut(s)	69
HphI	GGTGA	1 cut(s)	652
Hpy188I	TCNGA	3 cut(s)	100, 347, 389
Hpy188III	TCNNGA	7 cut(s)	14, 199, 282, 308, 314, 320, 719
Hpy99I	CGWCG	1 cut(s)	296
HpyAV	CCTTC	1 cut(s)	561
HpyCH4V	TGCA	4 cut(s)	130, 159, 586, 690
HpyF10VI	GCNNNNNNNGC	2 cut(s)	620, 696
HpyF3I	CTNAG	2 cut(s)	41, 344
Hsp92I	GRCGYC	1 cut(s)	165
Hsp92II	CATG	3 cut(s)	17, 640, 667
HspAI	GCGC	1 cut(s)	165
KasI	GGCGCC	1 cut(s)	164
Ksp22I	TGATCA	3 cut(s)	10, 103, 304
Kzo9I	GATC	8 cut(s)	10, 81, 103, 304, 310, 316, 700, 768
LmnI	GCTCC	1 cut(s)	117
LpnPI	CCDG	7 cut(s)	15, 82, 169, 413, 454, 466, 688
Lsp1109I	GCAGC	3 cut(s)	171, 632, 635
MaeI	CTAG	5 cut(s)	47, 192, 333, 489, 808
MaeIII	GTNAC	1 cut(s)	23
MalI	GATC	8 cut(s)	12, 83, 105, 306, 312, 318, 702, 770
MboI	GATC	8 cut(s)	10, 81, 103, 304, 310, 316, 700, 768
MboII	GAAGA	8 cut(s)	57, 91, 141, 165, 236, 257, 260, 763
MhlI	GDGCHC	2 cut(s)	396, 594
MluCI	AATT	2 cut(s)	296, 596
Mly113I	GGCGCC	1 cut(s)	165
MlyI	GAGTC	3 cut(s)	33, 731, 754
MmeI	TCCRAC	2 cut(s)	207, 671
MseI	TTAA	1 cut(s)	599
MspA1I	CMGCKG	1 cut(s)	162
MspI	CCGG	1 cut(s)	69
MspR9I	CCNGG	1 cut(s)	70
MwoI	GCNNNNNNNGC	2 cut(s)	620, 696
NarI	GGCGCC	1 cut(s)	165
NciI	CCSGG	1 cut(s)	70
NdeII	GATC	8 cut(s)	10, 81, 103, 304, 310, 316, 700, 768
NlaIII	CATG	3 cut(s)	17, 640, 667
NlaIV	GGNNCC	2 cut(s)	166, 473
NspV	TTCGAA	1 cut(s)	77
PagI	TCATGA	1 cut(s)	13
PkrI	GCNGC	6 cut(s)	91, 161, 164, 622, 625, 698
PleI	GAGTC	3 cut(s)	33, 730, 754
PluTI	GGCGCC	1 cut(s)	168
PpsI	GAGTC	3 cut(s)	33, 730, 754
PshBI	ATTAAT	1 cut(s)	599
PsiI	TTATAA	1 cut(s)	708
Psp124BI	GAGCTC	1 cut(s)	594
PspN4I	GGNNCC	2 cut(s)	166, 473
PspPI	GGNCC	3 cut(s)	59, 144, 492
PstI	CTGCAG	1 cut(s)	161
SacI	GAGCTC	1 cut(s)	594
SaqAI	TTAA	1 cut(s)	599
SatI	GCNGC	6 cut(s)	90, 160, 163, 621, 624, 697
Sau3AI	GATC	8 cut(s)	10, 81, 103, 304, 310, 316, 700, 768
Sau96I	GGNCC	3 cut(s)	59, 144, 492
SchI	GAGTC	3 cut(s)	33, 731, 754
ScrFI	CCNGG	1 cut(s)	70
SduI	GDGCHC	2 cut(s)	396, 594
SetI	ASST	9 cut(s)	22, 52, 61, 214, 243, 386, 441, 594, 805
SfcI	CTRYAG	3 cut(s)	157, 781, 798
SfoI	GGCGCC	1 cut(s)	166
SfuI	TTCGAA	1 cut(s)	77
SinI	GGWCC	2 cut(s)	59, 492
Sse9I	AATT	2 cut(s)	296, 596
SsiI	CCGC	3 cut(s)	90, 162, 696
SspDI	GGCGCC	1 cut(s)	164
SspMI	CTAG	5 cut(s)	47, 192, 333, 489, 808
SstI	GAGCTC	1 cut(s)	594
StyD4I	CCNGG	1 cut(s)	68
StyI	CCWWGG	2 cut(s)	34, 46
TaqI	TCGA	4 cut(s)	77, 84, 728, 752
TasI	AATT	2 cut(s)	296, 596
TauI	GCSGC	3 cut(s)	92, 165, 699
Tru1I	TTAA	1 cut(s)	599
Tru9I	TTAA	1 cut(s)	599
TscAI	CASTG	1 cut(s)	34
TseI	GCWGC	3 cut(s)	159, 620, 623
TspDTI	ATGAA	4 cut(s)	30, 267, 617, 653
TspRI	CASTG	1 cut(s)	34
VpaK11BI	GGWCC	2 cut(s)	59, 492
VspI	ATTAAT	1 cut(s)	599
XmaJI	CCTAGG	1 cut(s)	46
XspI	CTAG	5 cut(s)	47, 192, 333, 489, 808

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.