Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002348.1

Orthogroup ID

OG0003573

Physical Location & Seq

Genomic Coordinates Reverse (-)

98014 .. 98313

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002348.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

atgtgtagaactaagttgaagcaaactgaagcggattgcgagctgttaaagaaatgcagcgagactctcaaagaagagaacaggaggctacacaaggagctgcaagagctccagttaatgaaacaaacaccaacggcgccgttttacatgcagtttccgacggctactctcaccgtgtgcccttcctgcagtgagagaattggcaacggtactagtacccctattgccggtgatcatcatcatggaatatcgaagcctccccttttcaacccctttactcacccatctacagcttgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009738 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033993 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ HD-ZIP_N Homeobox

Protein Analysis

99

Amino Acids

11.13

Weight (kDa)

8.26

Isoelectric Point (pI)

59.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22800 AT4G37790
fragaria_vesca	FvH4_1g18530 FvH4_2g32410
malus_domestica	MD02G1192800.v1.1 MD08G1075400.v1.1 MD08G1075500.v1.1 MD15G1062900.v1.1 MD15G1302900.v1.1
prunus_persica	Prupe.1G416800_v2.0.a1 Prupe.6G213800_v2.0.a1
pyrus_communis	pycom02g15660 pycom08g06230 pycom15g05950 pycom15g26620
rosa_chinensis	RchiOBHm_Chr2g0109191 RchiOBHm_Chr6g0310291
rosa_laevigata	RLG00000010494 RLG00000017725
rosa_multiflora	Rmu_sc0002348.1_g000019 Rmu_sc0002348.1_g000020 Rmu_sc0009436.1_g000008
rosa_roxburghii	Rroxscaffold_2G00134400 Rroxscaffold_7G00158690
rosa_rugosa	Rorug02G0158300 Rorug06G0378500
rosa_samantha	Rh2AG209900 Rh2BG220300 Rh2CG212300 Rh2DG216100 Rh6AG492900 Rh6BG502500 Rh6CG507500 Rh6DG493600
rosa_wichuraiana	Rw6G042890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	136
AciI	CCGC	1 cut(s)	32
AcuI	CTGAAG	1 cut(s)	48
AcyI	GRCGYC	1 cut(s)	137
AdeI	CACNNNGTG	1 cut(s)	177
AfaI	GTAC	2 cut(s)	211, 217
AfiI	CCNNNNNNNGG	1 cut(s)	227
AgsI	TTSAA	2 cut(s)	19, 268
AhlI	ACTAGT	1 cut(s)	212
AluBI	AGCT	4 cut(s)	43, 100, 109, 293
AluI	AGCT	4 cut(s)	43, 100, 109, 293
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	1 cut(s)	56
ApeKI	GCWGC	2 cut(s)	57, 100
AspLEI	GCGC	1 cut(s)	139
AsuHPI	GGTGA	3 cut(s)	163, 242, 272
BaeGI	GKGCMC	1 cut(s)	182
BanI	GGYRCC	1 cut(s)	136
BanII	GRGCYC	1 cut(s)	111
Bbv12I	GWGCWC	1 cut(s)	111
BbvI	GCAGC	2 cut(s)	69, 87
BccI	CCATC	1 cut(s)	292
BceAI	ACGGC	3 cut(s)	124, 150, 177
BclI	TGATCA	1 cut(s)	232
BcoDI	GTCTC	1 cut(s)	56
BcuI	ACTAGT	1 cut(s)	212
BfaI	CTAG	2 cut(s)	213, 298
BfmI	CTRYAG	2 cut(s)	187, 288
BfoI	RGCGCY	1 cut(s)	140
BisI	GCNGC	2 cut(s)	58, 101
BlsI	GCNGC	2 cut(s)	59, 102
BmiI	GGNNCC	1 cut(s)	138
BpmI	CTGGAG	1 cut(s)	95
BsaBI	GATNNNNATC	1 cut(s)	237
BsaHI	GRCGYC	1 cut(s)	137
Bsc4I	CCNNNNNNNGG	1 cut(s)	227
Bse118I	RCCGGY	1 cut(s)	227
Bse1I	ACTGG	1 cut(s)	112
Bse8I	GATNNNNATC	1 cut(s)	237
BseJI	GATNNNNATC	1 cut(s)	237
BseLI	CCNNNNNNNGG	1 cut(s)	227
BseNI	ACTGG	1 cut(s)	112
BseSI	GKGCMC	1 cut(s)	182
BseXI	GCAGC	2 cut(s)	69, 87
BshNI	GGYRCC	1 cut(s)	136
BsiHKAI	GWGCWC	1 cut(s)	111
BsiSI	CCGG	1 cut(s)	228
BslI	CCNNNNNNNGG	1 cut(s)	227
BsmAI	GTCTC	1 cut(s)	56
Bsp1286I	GDGCHC	2 cut(s)	111, 182
Bsp143I	GATC	1 cut(s)	232
BspACI	CCGC	1 cut(s)	32
BspLI	GGNNCC	1 cut(s)	138
BspMAI	CTGCAG	1 cut(s)	191
BspT107I	GGYRCC	1 cut(s)	136
BsrFI	RCCGGY	1 cut(s)	227
BsrI	ACTGG	1 cut(s)	112
BssAI	RCCGGY	1 cut(s)	227
BssMI	GATC	1 cut(s)	232
BssNI	GRCGYC	1 cut(s)	137
Bst4CI	ACNGT	2 cut(s)	175, 209
Bst6I	CTCTTC	1 cut(s)	69
BstACI	GRCGYC	1 cut(s)	137
BstC8I	GCNNGC	2 cut(s)	41, 295
BstDEI	CTNAG	1 cut(s)	12
BstH2I	RGCGCY	1 cut(s)	140
BstHHI	GCGC	1 cut(s)	139
BstKTI	GATC	1 cut(s)	235
BstMAI	GTCTC	1 cut(s)	56
BstMBI	GATC	1 cut(s)	232
BstMWI	GCNNNNNNNGC	2 cut(s)	106, 186
BstNSI	RCATGY	1 cut(s)	151
BstSFI	CTRYAG	2 cut(s)	187, 288
BstSLI	GKGCMC	1 cut(s)	182
BstV1I	GCAGC	2 cut(s)	69, 87
BtsI	GCAGTG	1 cut(s)	196
BtsIMutI	CAGTG	1 cut(s)	196
Cac8I	GCNNGC	2 cut(s)	41, 295
CfoI	GCGC	1 cut(s)	139
Cfr10I	RCCGGY	1 cut(s)	227
Csp6I	GTAC	2 cut(s)	210, 216
CviAII	CATG	2 cut(s)	148, 242
CviJI	RGCY	7 cut(s)	43, 88, 100, 109, 164, 256, 293
CviKI_1	RGCY	7 cut(s)	43, 88, 100, 109, 164, 256, 293
CviQI	GTAC	2 cut(s)	210, 216
DdeI	CTNAG	1 cut(s)	12
DinI	GGCGCC	1 cut(s)	138
DpnI	GATC	1 cut(s)	234
DpnII	GATC	1 cut(s)	232
DraIII	CACNNNGTG	1 cut(s)	177
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Ecl136II	GAGCTC	1 cut(s)	109
Eco24I	GRGCYC	1 cut(s)	111
Eco53kI	GAGCTC	1 cut(s)	109
Eco57I	CTGAAG	1 cut(s)	48
EcoICRI	GAGCTC	1 cut(s)	109
EcoT38I	GRGCYC	1 cut(s)	111
EgeI	GGCGCC	1 cut(s)	138
EheI	GGCGCC	1 cut(s)	138
FaeI	CATG	2 cut(s)	151, 245
FaiI	YATR	2 cut(s)	149, 243
FatI	CATG	2 cut(s)	147, 241
FbaI	TGATCA	1 cut(s)	232
Fnu4HI	GCNGC	2 cut(s)	58, 101
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	2 cut(s)	58, 101
FspBI	CTAG	2 cut(s)	213, 298
GlaI	GCGC	1 cut(s)	138
GluI	GCNGC	2 cut(s)	58, 101
GsuI	CTGGAG	1 cut(s)	95
HaeII	RGCGCY	1 cut(s)	140
HapII	CCGG	1 cut(s)	228
HhaI	GCGC	1 cut(s)	139
Hin1I	GRCGYC	1 cut(s)	137
Hin1II	CATG	2 cut(s)	151, 245
Hin6I	GCGC	1 cut(s)	137
HinP1I	GCGC	1 cut(s)	137
HinfI	GANTC	1 cut(s)	64
HpaII	CCGG	1 cut(s)	228
HphI	GGTGA	3 cut(s)	163, 242, 272
Hpy188I	TCNGA	1 cut(s)	159
Hpy99I	CGWCG	1 cut(s)	163
HpyAV	CCTTC	1 cut(s)	192
HpyCH4III	ACNGT	2 cut(s)	175, 209
HpyCH4V	TGCA	4 cut(s)	57, 103, 151, 189
HpyF10VI	GCNNNNNNNGC	2 cut(s)	106, 186
HpyF3I	CTNAG	1 cut(s)	12
Hsp92I	GRCGYC	1 cut(s)	137
Hsp92II	CATG	2 cut(s)	151, 245
HspAI	GCGC	1 cut(s)	137
KasI	GGCGCC	1 cut(s)	136
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	1 cut(s)	232
LmnI	GCTCC	2 cut(s)	97, 114
LpnPI	CCDG	4 cut(s)	67, 125, 199, 241
Lsp1109I	GCAGC	2 cut(s)	69, 87
MaeI	CTAG	2 cut(s)	213, 298
MalI	GATC	1 cut(s)	234
MboI	GATC	1 cut(s)	232
MboII	GAAGA	1 cut(s)	86
MhlI	GDGCHC	2 cut(s)	111, 182
MluCI	AATT	1 cut(s)	198
Mly113I	GGCGCC	1 cut(s)	137
MlyI	GAGTC	1 cut(s)	58
MmeI	TCCRAC	1 cut(s)	182
MnlI	CCTC	2 cut(s)	78, 267
MseI	TTAA	2 cut(s)	47, 116
MslI	CAYNNNNRTG	1 cut(s)	240
MspI	CCGG	1 cut(s)	228
MwoI	GCNNNNNNNGC	2 cut(s)	106, 186
NarI	GGCGCC	1 cut(s)	137
NdeII	GATC	1 cut(s)	232
NlaIII	CATG	2 cut(s)	151, 245
NlaIV	GGNNCC	1 cut(s)	138
NspI	RCATGY	1 cut(s)	151
PkrI	GCNGC	2 cut(s)	59, 102
PleI	GAGTC	1 cut(s)	58
PluTI	GGCGCC	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	58
Psp124BI	GAGCTC	1 cut(s)	111
PspN4I	GGNNCC	1 cut(s)	138
PstI	CTGCAG	1 cut(s)	191
RsaI	GTAC	2 cut(s)	211, 217
RsaNI	GTAC	2 cut(s)	210, 216
RseI	CAYNNNNRTG	1 cut(s)	240
SacI	GAGCTC	1 cut(s)	111
SaqAI	TTAA	2 cut(s)	47, 116
SatI	GCNGC	2 cut(s)	58, 101
Sau3AI	GATC	1 cut(s)	232
SchI	GAGTC	1 cut(s)	58
SduI	GDGCHC	2 cut(s)	111, 182
SetI	ASST	4 cut(s)	45, 102, 111, 295
SfcI	CTRYAG	2 cut(s)	187, 288
SfoI	GGCGCC	1 cut(s)	138
SmiMI	CAYNNNNRTG	1 cut(s)	240
SpeI	ACTAGT	1 cut(s)	212
Sse9I	AATT	1 cut(s)	198
SsiI	CCGC	1 cut(s)	32
SspDI	GGCGCC	1 cut(s)	136
SspMI	CTAG	2 cut(s)	213, 298
SstI	GAGCTC	1 cut(s)	111
TaaI	ACNGT	2 cut(s)	175, 209
TaqI	TCGA	1 cut(s)	251
TasI	AATT	1 cut(s)	198
Tru1I	TTAA	2 cut(s)	47, 116
Tru9I	TTAA	2 cut(s)	47, 116
TscAI	CASTG	1 cut(s)	196
TseI	GCWGC	2 cut(s)	57, 100
TspDTI	ATGAA	1 cut(s)	134
TspRI	CASTG	1 cut(s)	196
XceI	RCATGY	1 cut(s)	151
XspI	CTAG	2 cut(s)	213, 298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.