Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0003573

Physical Location & Seq

Genomic Coordinates Forward (+)

10885336 .. 10887145

Gene Structure 1810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g18530.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGGTTTTGATGATCAGCATGCTTGCAACACAGGCCTTGTCTTAGGTTTAGGTCTCACAGCTTCCCAATACAGCACCAGTACTCCAACTCCACAAAAGGCTCAACATCCCATGATGAATAAGAAGCCTGATTCCTTCGAGCCATCTTTAACTTTGGGTCTGTTTGGAAATAGTTTTCATGAGGATGATCATCATCAAGGGAATAATAGTCTTGATTTGTATAGGCAAGGGTCTCCTCATAATAGTCATAGCGCAGTTTCTAATTCCTTCTCGAGTGGTAGAGTGGTCAAGAGGGAGAGAGACATCAGTAGCGAGGAGGTTGAGGTTGAGAAGCAGGTCTCTTCCAGAGTGATTAGTGATGAAGATGAAGATGGTCCTAATGCAAGAAAGAAGCTCAGGCTCACCAAAGAACAGTCTGCGCTCTTAGAAGAAAGCTTCAAACAACACAGCACTCTCAACCCTAAGCAAAAGCAAGCTTTAGCCAGGCAGTTAAGTTTGAGGCCTCGACAAGTAGAAGTTTGGTTCCAAAACAGGAGGGCCAGGACAAAGCTTAAGCAAACAGAGGTAGACTGTGAGTTCTTGAAGAAATGCTGTGAAACTCTGACAGATGAGAACCGGAGGCTACAGAAAGAGGTACAAGAACTCAAGGCTCTGAAGCTCAGCCAACAACAACCGTTGTTCATGCACATGCCGGCGGCGACTCTCACCATGTGTCCTTCCTGTGAAAGGATCGGAGGAAGCGAAGGTGCTAATTCAAATAAGAGCCCCTTTTCAATTGCTCATCCAAAGCCTCACTTCTATAATCCTTTCACCAATTCTTCTGCAGCTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009738 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033993 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

278

Amino Acids

31.14

Weight (kDa)

8.43

Isoelectric Point (pI)

54.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	129 - 183	1.2e-15	Homeodomain
HALZ	PF02183	185 - 219	1.1e-10	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22800 AT4G37790
fragaria_vesca	FvH4_1g18530 FvH4_2g32410
malus_domestica	MD02G1192800.v1.1 MD08G1075400.v1.1 MD08G1075500.v1.1 MD15G1062900.v1.1 MD15G1302900.v1.1
prunus_persica	Prupe.1G416800_v2.0.a1 Prupe.6G213800_v2.0.a1
pyrus_communis	pycom02g15660 pycom08g06230 pycom15g05950 pycom15g26620
rosa_chinensis	RchiOBHm_Chr2g0109191 RchiOBHm_Chr6g0310291
rosa_laevigata	RLG00000010494 RLG00000017725
rosa_multiflora	Rmu_sc0002348.1_g000019 Rmu_sc0002348.1_g000020 Rmu_sc0009436.1_g000008
rosa_roxburghii	Rroxscaffold_2G00134400 Rroxscaffold_7G00158690
rosa_rugosa	Rorug02G0158300 Rorug06G0378500
rosa_samantha	Rh2AG209900 Rh2BG220300 Rh2CG212300 Rh2DG216100 Rh6AG492900 Rh6BG502500 Rh6CG507500 Rh6DG493600
rosa_wichuraiana	Rw6G042890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	325
AccI	GTMKAC	1 cut(s)	567
AciI	CCGC	1 cut(s)	695
AclWI	GGATC	1 cut(s)	737
AcuI	CTGAAG	1 cut(s)	674
AdeI	CACNNNGTG	1 cut(s)	711
AfaI	GTAC	2 cut(s)	82, 636
AfiI	CCNNNNNNNGG	1 cut(s)	726
AflII	CTTAAG	1 cut(s)	551
AgsI	TTSAA	4 cut(s)	439, 583, 756, 774
AjnI	CCWGG	2 cut(s)	482, 539
AluBI	AGCT	7 cut(s)	62, 394, 435, 476, 550, 658, 827
AluI	AGCT	7 cut(s)	62, 394, 435, 476, 550, 658, 827
Alw26I	GTCTC	4 cut(s)	59, 237, 294, 343
AlwI	GGATC	1 cut(s)	737
Ama87I	CYCGRG	1 cut(s)	271
AoxI	GGCC	3 cut(s)	34, 500, 537
ApeKI	GCWGC	1 cut(s)	824
AspLEI	GCGC	2 cut(s)	254, 421
AspS9I	GGNCC	2 cut(s)	374, 537
AsuHPI	GGTGA	3 cut(s)	394, 697, 802
AvaI	CYCGRG	1 cut(s)	271
AvaII	GGWCC	1 cut(s)	374
BanII	GRGCYC	1 cut(s)	767
BccI	CCATC	2 cut(s)	151, 365
BciT130I	CCWGG	2 cut(s)	484, 541
BclI	TGATCA	2 cut(s)	13, 187
BcoDI	GTCTC	4 cut(s)	59, 237, 294, 343
BfmI	CTRYAG	2 cut(s)	623, 822
BfrI	CTTAAG	1 cut(s)	551
BfuAI	ACCTGC	1 cut(s)	325
BisI	GCNGC	2 cut(s)	696, 825
BlpI	GCTNAGC	1 cut(s)	659
BlsI	GCNGC	2 cut(s)	697, 826
BmcAI	AGTACT	1 cut(s)	82
Bme1390I	CCNGG	2 cut(s)	484, 541
Bme18I	GGWCC	1 cut(s)	374
BmeT110I	CYCGRG	1 cut(s)	271
BmgT120I	GGNCC	2 cut(s)	374, 537
BmiI	GGNNCC	1 cut(s)	524
BmrFI	CCNGG	2 cut(s)	484, 541
Bpu10I	CCTNAGC	2 cut(s)	395, 462
Bpu1102I	GCTNAGC	1 cut(s)	659
BpuEI	CTTGAG	1 cut(s)	629
BsaBI	GATNNNNATC	2 cut(s)	189, 192
BsaI	GGTCTC	3 cut(s)	59, 237, 343
BsaWI	WCCGGW	1 cut(s)	615
BsaXI	ACNNNNNCTCC	4 cut(s)	67, 73, 97, 103
Bsc4I	CCNNNNNNNGG	1 cut(s)	726
Bse118I	RCCGGY	1 cut(s)	691
Bse1I	ACTGG	1 cut(s)	78
Bse8I	GATNNNNATC	2 cut(s)	189, 192
BseBI	CCWGG	2 cut(s)	484, 541
BseGI	GGATG	3 cut(s)	106, 190, 781
BseJI	GATNNNNATC	2 cut(s)	189, 192
BseLI	CCNNNNNNNGG	1 cut(s)	726
BseMII	CTCAG	2 cut(s)	409, 673
BseNI	ACTGG	1 cut(s)	78
BseRI	GAGGAG	2 cut(s)	225, 329
BshFI	GGCC	3 cut(s)	36, 502, 539
BsiHKCI	CYCGRG	1 cut(s)	271
BsiSI	CCGG	2 cut(s)	616, 692
BslI	CCNNNNNNNGG	1 cut(s)	726
BsmAI	GTCTC	4 cut(s)	59, 237, 294, 343
BsnI	GGCC	3 cut(s)	36, 502, 539
Bso31I	GGTCTC	3 cut(s)	59, 237, 343
BsoBI	CYCGRG	1 cut(s)	271
Bsp1286I	GDGCHC	1 cut(s)	767
Bsp143I	GATC	3 cut(s)	13, 187, 729
Bsp1720I	GCTNAGC	1 cut(s)	659
BspACI	CCGC	1 cut(s)	695
BspANI	GGCC	3 cut(s)	36, 502, 539
BspCNI	CTCAG	2 cut(s)	408, 672
BspHI	TCATGA	1 cut(s)	178
BspLI	GGNNCC	1 cut(s)	524
BspMAI	CTGCAG	1 cut(s)	826
BspMI	ACCTGC	1 cut(s)	325
BspPI	GGATC	1 cut(s)	737
BspTI	CTTAAG	1 cut(s)	551
BspTNI	GGTCTC	3 cut(s)	59, 237, 343
BsrFI	RCCGGY	1 cut(s)	691
BsrI	ACTGG	1 cut(s)	78
BssAI	RCCGGY	1 cut(s)	691
BssMI	GATC	3 cut(s)	13, 187, 729
Bst2UI	CCWGG	2 cut(s)	484, 541
Bst4CI	ACNGT	3 cut(s)	414, 572, 675
Bst6I	CTCTTC	1 cut(s)	346
BstAFI	CTTAAG	1 cut(s)	551
BstC8I	GCNNGC	4 cut(s)	21, 25, 474, 693
BstDEI	CTNAG	5 cut(s)	43, 395, 424, 462, 659
BstENI	CCTNNNNNAGG	1 cut(s)	724
BstF5I	GGATG	3 cut(s)	106, 190, 781
BstHHI	GCGC	2 cut(s)	254, 421
BstKTI	GATC	3 cut(s)	16, 190, 732
BstMAI	GTCTC	4 cut(s)	59, 237, 294, 343
BstMBI	GATC	3 cut(s)	13, 187, 729
BstMWI	GCNNNNNNNGC	1 cut(s)	33
BstNI	CCWGG	2 cut(s)	484, 541
BstNSI	RCATGY	2 cut(s)	23, 691
BstSCI	CCNGG	2 cut(s)	482, 539
BstSFI	CTRYAG	2 cut(s)	623, 822
BsuRI	GGCC	3 cut(s)	36, 502, 539
BtsCI	GGATG	3 cut(s)	106, 190, 781
BveI	ACCTGC	1 cut(s)	325
Cac8I	GCNNGC	4 cut(s)	21, 25, 474, 693
CciI	TCATGA	1 cut(s)	178
CfoI	GCGC	2 cut(s)	254, 421
Cfr10I	RCCGGY	1 cut(s)	691
Cfr13I	GGNCC	2 cut(s)	374, 537
Csp6I	GTAC	2 cut(s)	81, 635
CviAII	CATG	6 cut(s)	20, 112, 179, 682, 688, 709
CviQI	GTAC	2 cut(s)	81, 635
DdeI	CTNAG	5 cut(s)	43, 395, 424, 462, 659
DpnI	GATC	3 cut(s)	15, 189, 731
DpnII	GATC	3 cut(s)	13, 187, 729
DraIII	CACNNNGTG	1 cut(s)	711
Eam1104I	CTCTTC	1 cut(s)	346
EarI	CTCTTC	1 cut(s)	346
Eco147I	AGGCCT	2 cut(s)	36, 502
Eco24I	GRGCYC	1 cut(s)	767
Eco31I	GGTCTC	3 cut(s)	59, 237, 343
Eco47I	GGWCC	1 cut(s)	374
Eco57I	CTGAAG	1 cut(s)	674
Eco88I	CYCGRG	1 cut(s)	271
EcoNI	CCTNNNNNAGG	1 cut(s)	724
EcoRII	CCWGG	2 cut(s)	482, 539
EcoT38I	GRGCYC	1 cut(s)	767
FaeI	CATG	6 cut(s)	23, 115, 182, 685, 691, 712
FalI	AAGNNNNNCTT	4 cut(s)	752, 784, 779, 811
FatI	CATG	6 cut(s)	19, 111, 178, 681, 687, 708
FbaI	TGATCA	2 cut(s)	13, 187
FblI	GTMKAC	1 cut(s)	567
Fnu4HI	GCNGC	2 cut(s)	696, 825
FokI	GGATG	3 cut(s)	93, 197, 768
FriOI	GRGCYC	1 cut(s)	767
Fsp4HI	GCNGC	2 cut(s)	696, 825
GlaI	GCGC	2 cut(s)	253, 420
GluI	GCNGC	2 cut(s)	696, 825
HaeIII	GGCC	3 cut(s)	36, 502, 539
HapII	CCGG	2 cut(s)	616, 692
HhaI	GCGC	2 cut(s)	254, 421
Hin1II	CATG	6 cut(s)	23, 115, 182, 685, 691, 712
Hin6I	GCGC	2 cut(s)	252, 419
HinP1I	GCGC	2 cut(s)	252, 419
HindIII	AAGCTT	3 cut(s)	433, 474, 548
HinfI	GANTC	2 cut(s)	131, 700
HpaII	CCGG	2 cut(s)	616, 692
HphI	GGTGA	3 cut(s)	394, 697, 802
Hpy166II	GTNNAC	1 cut(s)	568
Hpy188I	TCNGA	3 cut(s)	603, 654, 734
Hpy188III	TCNNGA	6 cut(s)	179, 212, 271, 289, 345, 580
Hpy8I	GTNNAC	1 cut(s)	568
HpyAV	CCTTC	4 cut(s)	145, 277, 726, 737
HpyCH4III	ACNGT	3 cut(s)	414, 572, 675
HpyCH4V	TGCA	4 cut(s)	27, 383, 685, 824
HpyF10VI	GCNNNNNNNGC	1 cut(s)	33
HpyF3I	CTNAG	5 cut(s)	43, 395, 424, 462, 659
Hsp92II	CATG	6 cut(s)	23, 115, 182, 685, 691, 712
HspAI	GCGC	2 cut(s)	252, 419
KroI	GCCGGC	1 cut(s)	691
KroNI	GCCGGC	1 cut(s)	693
Ksp22I	TGATCA	2 cut(s)	13, 187
Kzo9I	GATC	3 cut(s)	13, 187, 729
MalI	GATC	3 cut(s)	15, 189, 731
MboI	GATC	3 cut(s)	13, 187, 729
MboII	GAAGA	6 cut(s)	333, 374, 380, 440, 595, 810
MfeI	CAATTG	1 cut(s)	774
MhlI	GDGCHC	1 cut(s)	767
MluCI	AATT	4 cut(s)	262, 751, 774, 814
MlyI	GAGTC	1 cut(s)	694
MmeI	TCCRAC	1 cut(s)	110
MroNI	GCCGGC	1 cut(s)	691
MseI	TTAA	4 cut(s)	149, 491, 552, 832
MslI	CAYNNNNRTG	2 cut(s)	183, 686
MspCI	CTTAAG	1 cut(s)	551
MspI	CCGG	2 cut(s)	616, 692
MspR9I	CCNGG	2 cut(s)	484, 541
MunI	CAATTG	1 cut(s)	774
MvaI	CCWGG	2 cut(s)	484, 541
MwoI	GCNNNNNNNGC	1 cut(s)	33
NaeI	GCCGGC	1 cut(s)	693
NdeII	GATC	3 cut(s)	13, 187, 729
NgoMIV	GCCGGC	1 cut(s)	691
NlaIII	CATG	6 cut(s)	23, 115, 182, 685, 691, 712
NlaIV	GGNNCC	1 cut(s)	524
NspI	RCATGY	2 cut(s)	23, 691
PaeI	GCATGC	1 cut(s)	23
PaeR7I	CTCGAG	1 cut(s)	271
PagI	TCATGA	1 cut(s)	178
PceI	AGGCCT	2 cut(s)	36, 502
PcsI	WCGNNNNNNNCGW	1 cut(s)	738
PdiI	GCCGGC	1 cut(s)	693
PfeI	GAWTC	1 cut(s)	131
PkrI	GCNGC	2 cut(s)	697, 826
PleI	GAGTC	1 cut(s)	694
PpsI	GAGTC	1 cut(s)	694
Psp6I	CCWGG	2 cut(s)	482, 539
PspGI	CCWGG	2 cut(s)	482, 539
PspN4I	GGNNCC	1 cut(s)	524
PspPI	GGNCC	2 cut(s)	374, 537
PstI	CTGCAG	1 cut(s)	826
RsaI	GTAC	2 cut(s)	82, 636
RsaNI	GTAC	2 cut(s)	81, 635
RseI	CAYNNNNRTG	2 cut(s)	183, 686
SaqAI	TTAA	4 cut(s)	149, 491, 552, 832
SatI	GCNGC	2 cut(s)	696, 825
Sau3AI	GATC	3 cut(s)	13, 187, 729
Sau96I	GGNCC	2 cut(s)	374, 537
ScaI	AGTACT	1 cut(s)	82
SchI	GAGTC	1 cut(s)	694
ScrFI	CCNGG	2 cut(s)	484, 541
SduI	GDGCHC	1 cut(s)	767
SfcI	CTRYAG	2 cut(s)	623, 822
Sfr274I	CTCGAG	1 cut(s)	271
SinI	GGWCC	1 cut(s)	374
SlaI	CTCGAG	1 cut(s)	271
SmiMI	CAYNNNNRTG	2 cut(s)	183, 686
SmlI	CTYRAG	3 cut(s)	271, 551, 644
SmoI	CTYRAG	3 cut(s)	271, 551, 644
SphI	GCATGC	1 cut(s)	23
Sse9I	AATT	4 cut(s)	262, 751, 774, 814
SseBI	AGGCCT	2 cut(s)	36, 502
SsiI	CCGC	1 cut(s)	695
StuI	AGGCCT	2 cut(s)	36, 502
StyD4I	CCNGG	2 cut(s)	482, 539
TaaI	ACNGT	3 cut(s)	414, 572, 675
TaqI	TCGA	3 cut(s)	138, 272, 505
TasI	AATT	4 cut(s)	262, 751, 774, 814
TatI	WGTACW	1 cut(s)	80
TauI	GCSGC	1 cut(s)	698
TfiI	GAWTC	1 cut(s)	131
Tru1I	TTAA	4 cut(s)	149, 491, 552, 832
Tru9I	TTAA	4 cut(s)	149, 491, 552, 832
TseI	GCWGC	1 cut(s)	824
TspDTI	ATGAA	5 cut(s)	131, 167, 375, 381, 670
Vha464I	CTTAAG	1 cut(s)	551
VpaK11BI	GGWCC	1 cut(s)	374
XagI	CCTNNNNNAGG	1 cut(s)	724
XceI	RCATGY	2 cut(s)	23, 691
XhoI	CTCGAG	1 cut(s)	271
XmiI	GTMKAC	1 cut(s)	567
ZrmI	AGTACT	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.