Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0003573

Physical Location & Seq

Genomic Coordinates Reverse (-)

6124191 .. 6126162

Gene Structure 1972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1075400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGGTTTTGATCATGAAGCTTGTAACACTGGCCTTGGACTCAGCCTAGGTTGTCAAGGTAATCCAGATCATCATACAAATTTGCAGGCTTTCGATCTCGATCACCAAAAGAAGAAGAAAATACAGTTGAAATATGATCACCTATTGCCGGCTCTAACCCTAGGTCCATCTTCCGGGGCTTCGAAGATCGAGGCCGCCAAATCGGATGATCATTTGCTCCAAGTAGTATATGTGCAAGCACAAGAACGGGCCTCTTCTCCCTGCAGCGGCGCCGTTTCTTCGTTCTCCAACTCATCTAGTTTCAAGAGGGACAGAGGTTTGGGTGTTGAAGAAATAGAGGGAGAGGTAGAAGAAGATAGAGTAGTGAATATCACTACTTCATCAAGAGTAAGCGACGAATTATATGATCAAGATCAAGATCACGAGGGCAGTCCTAGAAAGAAACTCAGACTTACAAAAGAACAATCTGCCACTTTAGAGGACAGCTTCAGAGAGCACACTACTCTCAATCCAAAACAAAAACAAGAACTGGCAAGAAAGCTAAACTTACGCCCACGACAAGTTGAAGTCTGGTTCCAAAACAGGAGGGCTAGGACCAAGTTGAAGCAAACAGAAGCAGAGTGCGAGTTGTTGAAACAATGTTGTGAAACATTGAAAGATGAGAACAGAAGGCTACACAAGGAGTTGCAAGAGCTCAAATTAATGAAACATACAGCAACAGCAGCAGCACCCCTTTACATGAAGTTTCCAACTGCCACTCTCACCATGTGTCCCTCCTGTGAGAAAATCTGCAACGGCGGCGATCATTATAATCATAATCACGAGTCATCGACAAGTCCATTTTTAGTCGGGTCGAATAAGACTCACTTGATCTTCAACCCCTACAGCACTCATCCATCTACAGCTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

304

Amino Acids

34.09

Weight (kDa)

6.94

Isoelectric Point (pI)

56.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	146 - 200	1.6e-16	Homeodomain
HALZ	PF02183	202 - 235	4.3e-08	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22800 AT4G37790
fragaria_vesca	FvH4_1g18530 FvH4_2g32410
malus_domestica	MD02G1192800.v1.1 MD08G1075400.v1.1 MD08G1075500.v1.1 MD15G1062900.v1.1 MD15G1302900.v1.1
prunus_persica	Prupe.1G416800_v2.0.a1 Prupe.6G213800_v2.0.a1
pyrus_communis	pycom02g15660 pycom08g06230 pycom15g05950 pycom15g26620
rosa_chinensis	RchiOBHm_Chr2g0109191 RchiOBHm_Chr6g0310291
rosa_laevigata	RLG00000010494 RLG00000017725
rosa_multiflora	Rmu_sc0002348.1_g000019 Rmu_sc0002348.1_g000020 Rmu_sc0009436.1_g000008
rosa_roxburghii	Rroxscaffold_2G00134400 Rroxscaffold_7G00158690
rosa_rugosa	Rorug02G0158300 Rorug06G0378500
rosa_samantha	Rh2AG209900 Rh2BG220300 Rh2CG212300 Rh2DG216100 Rh6AG492900 Rh6BG502500 Rh6CG507500 Rh6DG493600
rosa_wichuraiana	Rw6G042890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	810
AccB1I	GGYRCC	1 cut(s)	269
AciI	CCGC	3 cut(s)	195, 267, 798
AcsI	RAATTY	1 cut(s)	79
AcuI	CTGAAG	1 cut(s)	472
AcyI	GRCGYC	1 cut(s)	270
AdeI	CACNNNGTG	1 cut(s)	768
AfiI	CCNNNNNNNGG	3 cut(s)	148, 173, 266
AgsI	TTSAA	8 cut(s)	130, 304, 329, 566, 604, 634, 655, 877
AluBI	AGCT	5 cut(s)	20, 486, 541, 694, 905
AluI	AGCT	5 cut(s)	20, 486, 541, 694, 905
Alw21I	GWGCWC	2 cut(s)	498, 696
AoxI	GGCC	3 cut(s)	31, 192, 249
ApeKI	GCWGC	3 cut(s)	264, 722, 725
ApoI	RAATTY	1 cut(s)	79
AseI	ATTAAT	1 cut(s)	701
AspA2I	CCTAGG	2 cut(s)	46, 160
AspLEI	GCGC	1 cut(s)	272
AspS9I	GGNCC	3 cut(s)	164, 249, 594
AsuC2I	CCSGG	1 cut(s)	175
AsuHPI	GGTGA	3 cut(s)	95, 131, 754
AsuII	TTCGAA	1 cut(s)	182
AvaII	GGWCC	2 cut(s)	164, 594
AvrII	CCTAGG	2 cut(s)	46, 160
BanI	GGYRCC	1 cut(s)	269
BanII	GRGCYC	1 cut(s)	696
BauI	CACGAG	2 cut(s)	422, 821
Bbv12I	GWGCWC	2 cut(s)	498, 696
BbvI	GCAGC	3 cut(s)	276, 734, 737
BccI	CCATC	2 cut(s)	175, 904
BceAI	ACGGC	2 cut(s)	257, 811
BclI	TGATCA	4 cut(s)	10, 136, 208, 406
BcnI	CCSGG	1 cut(s)	175
BfaI	CTAG	6 cut(s)	47, 161, 297, 435, 591, 910
BfmI	CTRYAG	3 cut(s)	262, 883, 900
BfoI	RGCGCY	1 cut(s)	273
BisI	GCNGC	6 cut(s)	195, 265, 268, 723, 726, 799
BlnI	CCTAGG	2 cut(s)	46, 160
BlsI	GCNGC	6 cut(s)	196, 266, 269, 724, 727, 800
Bme1390I	CCNGG	1 cut(s)	175
Bme18I	GGWCC	2 cut(s)	164, 594
BmgT120I	GGNCC	3 cut(s)	164, 249, 594
BmiI	GGNNCC	2 cut(s)	271, 575
BmrFI	CCNGG	1 cut(s)	175
Bpu14I	TTCGAA	1 cut(s)	182
BpuMI	CCSGG	1 cut(s)	175
BsaBI	GATNNNNATC	3 cut(s)	99, 411, 417
BsaHI	GRCGYC	1 cut(s)	270
BsaJI	CCNNGG	4 cut(s)	34, 46, 160, 174
Bsc4I	CCNNNNNNNGG	3 cut(s)	148, 173, 266
Bse118I	RCCGGY	1 cut(s)	148
Bse1I	ACTGG	2 cut(s)	34, 534
Bse8I	GATNNNNATC	3 cut(s)	99, 411, 417
BseDI	CCNNGG	4 cut(s)	34, 46, 160, 174
BseGI	GGATG	2 cut(s)	211, 892
BseJI	GATNNNNATC	3 cut(s)	99, 411, 417
BseLI	CCNNNNNNNGG	3 cut(s)	148, 173, 266
BseMII	CTCAG	2 cut(s)	55, 460
BseNI	ACTGG	2 cut(s)	34, 534
BseXI	GCAGC	3 cut(s)	276, 734, 737
BshFI	GGCC	3 cut(s)	33, 194, 251
BshNI	GGYRCC	1 cut(s)	269
BsiHKAI	GWGCWC	2 cut(s)	498, 696
BsiSI	CCGG	2 cut(s)	149, 174
BslFI	GGGAC	2 cut(s)	323, 756
BslI	CCNNNNNNNGG	3 cut(s)	148, 173, 266
BsmFI	GGGAC	2 cut(s)	323, 756
BsnI	GGCC	3 cut(s)	33, 194, 251
Bsp119I	TTCGAA	1 cut(s)	182
Bsp1286I	GDGCHC	2 cut(s)	498, 696
BspACI	CCGC	3 cut(s)	195, 267, 798
BspANI	GGCC	3 cut(s)	33, 194, 251
BspCNI	CTCAG	2 cut(s)	54, 459
BspHI	TCATGA	1 cut(s)	13
BspLI	GGNNCC	2 cut(s)	271, 575
BspMAI	CTGCAG	1 cut(s)	266
BspT104I	TTCGAA	1 cut(s)	182
BspT107I	GGYRCC	1 cut(s)	269
BsrFI	RCCGGY	1 cut(s)	148
BsrI	ACTGG	2 cut(s)	34, 534
BssAI	RCCGGY	1 cut(s)	148
BssECI	CCNNGG	4 cut(s)	34, 46, 160, 174
BssNI	GRCGYC	1 cut(s)	270
BssSI	CACGAG	2 cut(s)	422, 821
BssT1I	CCWWGG	3 cut(s)	34, 46, 160
Bst2BI	CACGAG	2 cut(s)	422, 821
Bst4CI	ACNGT	1 cut(s)	126
Bst6I	CTCTTC	1 cut(s)	259
BstACI	GRCGYC	1 cut(s)	270
BstBI	TTCGAA	1 cut(s)	182
BstC8I	GCNNGC	4 cut(s)	87, 150, 237, 907
BstDEI	CTNAG	2 cut(s)	41, 446
BstF5I	GGATG	2 cut(s)	211, 892
BstH2I	RGCGCY	1 cut(s)	273
BstHHI	GCGC	1 cut(s)	272
BstMWI	GCNNNNNNNGC	2 cut(s)	722, 798
BstSCI	CCNGG	1 cut(s)	173
BstSFI	CTRYAG	3 cut(s)	262, 883, 900
BstV1I	GCAGC	3 cut(s)	276, 734, 737
BsuRI	GGCC	3 cut(s)	33, 194, 251
BtsCI	GGATG	2 cut(s)	211, 892
BtsIMutI	CAGTG	1 cut(s)	27
Cac8I	GCNNGC	4 cut(s)	87, 150, 237, 907
CciI	TCATGA	1 cut(s)	13
CfoI	GCGC	1 cut(s)	272
Cfr10I	RCCGGY	1 cut(s)	148
Cfr13I	GGNCC	3 cut(s)	164, 249, 594
CviAII	CATG	3 cut(s)	14, 739, 766
DdeI	CTNAG	2 cut(s)	41, 446
DinI	GGCGCC	1 cut(s)	271
DraIII	CACNNNGTG	1 cut(s)	768
Eam1104I	CTCTTC	1 cut(s)	259
EarI	CTCTTC	1 cut(s)	259
Ecl136II	GAGCTC	1 cut(s)	694
Eco130I	CCWWGG	3 cut(s)	34, 46, 160
Eco24I	GRGCYC	1 cut(s)	696
Eco47I	GGWCC	2 cut(s)	164, 594
Eco53kI	GAGCTC	1 cut(s)	694
Eco57I	CTGAAG	1 cut(s)	472
EcoICRI	GAGCTC	1 cut(s)	694
EcoT14I	CCWWGG	3 cut(s)	34, 46, 160
EcoT38I	GRGCYC	1 cut(s)	696
EgeI	GGCGCC	1 cut(s)	271
EheI	GGCGCC	1 cut(s)	271
ErhI	CCWWGG	3 cut(s)	34, 46, 160
FaeI	CATG	3 cut(s)	17, 742, 769
FalI	AAGNNNNNCTT	4 cut(s)	530, 562, 851, 883
FaqI	GGGAC	2 cut(s)	323, 756
FatI	CATG	3 cut(s)	13, 738, 765
FbaI	TGATCA	4 cut(s)	10, 136, 208, 406
Fnu4HI	GCNGC	6 cut(s)	195, 265, 268, 723, 726, 799
FokI	GGATG	2 cut(s)	218, 879
FriOI	GRGCYC	1 cut(s)	696
Fsp4HI	GCNGC	6 cut(s)	195, 265, 268, 723, 726, 799
FspBI	CTAG	6 cut(s)	47, 161, 297, 435, 591, 910
GlaI	GCGC	1 cut(s)	271
GluI	GCNGC	6 cut(s)	195, 265, 268, 723, 726, 799
HaeII	RGCGCY	1 cut(s)	273
HaeIII	GGCC	3 cut(s)	33, 194, 251
HapII	CCGG	2 cut(s)	149, 174
HhaI	GCGC	1 cut(s)	272
Hin1I	GRCGYC	1 cut(s)	270
Hin1II	CATG	3 cut(s)	17, 742, 769
Hin6I	GCGC	1 cut(s)	270
HinP1I	GCGC	1 cut(s)	270
HindIII	AAGCTT	1 cut(s)	18
HinfI	GANTC	3 cut(s)	39, 824, 862
HpaII	CCGG	2 cut(s)	149, 174
HphI	GGTGA	3 cut(s)	95, 131, 754
Hpy188I	TCNGA	3 cut(s)	205, 449, 491
Hpy188III	TCNNGA	9 cut(s)	14, 65, 98, 304, 384, 410, 416, 422, 821
Hpy99I	CGWCG	1 cut(s)	398
HpyAV	CCTTC	1 cut(s)	663
HpyCH4III	ACNGT	1 cut(s)	126
HpyCH4V	TGCA	5 cut(s)	85, 235, 264, 688, 792
HpyF10VI	GCNNNNNNNGC	2 cut(s)	722, 798
HpyF3I	CTNAG	2 cut(s)	41, 446
Hsp92I	GRCGYC	1 cut(s)	270
Hsp92II	CATG	3 cut(s)	17, 742, 769
HspAI	GCGC	1 cut(s)	270
KasI	GGCGCC	1 cut(s)	269
KroI	GCCGGC	1 cut(s)	148
KroNI	GCCGGC	1 cut(s)	150
Ksp22I	TGATCA	4 cut(s)	10, 136, 208, 406
LmnI	GCTCC	1 cut(s)	222
Lsp1109I	GCAGC	3 cut(s)	276, 734, 737
MaeI	CTAG	6 cut(s)	47, 161, 297, 435, 591, 910
MaeIII	GTNAC	1 cut(s)	23
MhlI	GDGCHC	2 cut(s)	498, 696
MluCI	AATT	3 cut(s)	79, 398, 698
Mly113I	GGCGCC	1 cut(s)	270
MlyI	GAGTC	3 cut(s)	33, 833, 856
MmeI	TCCRAC	2 cut(s)	312, 773
MroNI	GCCGGC	1 cut(s)	148
MseI	TTAA	1 cut(s)	701
MspA1I	CMGCKG	1 cut(s)	267
MspI	CCGG	2 cut(s)	149, 174
MspR9I	CCNGG	1 cut(s)	175
MwoI	GCNNNNNNNGC	2 cut(s)	722, 798
NaeI	GCCGGC	1 cut(s)	150
NarI	GGCGCC	1 cut(s)	270
NciI	CCSGG	1 cut(s)	175
NgoMIV	GCCGGC	1 cut(s)	148
NlaIII	CATG	3 cut(s)	17, 742, 769
NlaIV	GGNNCC	2 cut(s)	271, 575
NspV	TTCGAA	1 cut(s)	182
PagI	TCATGA	1 cut(s)	13
PdiI	GCCGGC	1 cut(s)	150
PkrI	GCNGC	6 cut(s)	196, 266, 269, 724, 727, 800
PleI	GAGTC	3 cut(s)	33, 832, 856
PluTI	GGCGCC	1 cut(s)	273
PpsI	GAGTC	3 cut(s)	33, 832, 856
PshBI	ATTAAT	1 cut(s)	701
PsiI	TTATAA	1 cut(s)	810
Psp124BI	GAGCTC	1 cut(s)	696
PspN4I	GGNNCC	2 cut(s)	271, 575
PspPI	GGNCC	3 cut(s)	164, 249, 594
PstI	CTGCAG	1 cut(s)	266
SacI	GAGCTC	1 cut(s)	696
SaqAI	TTAA	1 cut(s)	701
SatI	GCNGC	6 cut(s)	195, 265, 268, 723, 726, 799
Sau96I	GGNCC	3 cut(s)	164, 249, 594
SchI	GAGTC	3 cut(s)	33, 833, 856
ScrFI	CCNGG	1 cut(s)	175
SduI	GDGCHC	2 cut(s)	498, 696
SfcI	CTRYAG	3 cut(s)	262, 883, 900
SfoI	GGCGCC	1 cut(s)	271
SfuI	TTCGAA	1 cut(s)	182
SinI	GGWCC	2 cut(s)	164, 594
Sse9I	AATT	3 cut(s)	79, 398, 698
SsiI	CCGC	3 cut(s)	195, 267, 798
SspDI	GGCGCC	1 cut(s)	269
SspMI	CTAG	6 cut(s)	47, 161, 297, 435, 591, 910
SstI	GAGCTC	1 cut(s)	696
StyD4I	CCNGG	1 cut(s)	173
StyI	CCWWGG	3 cut(s)	34, 46, 160
TaaI	ACNGT	1 cut(s)	126
TaqI	TCGA	6 cut(s)	93, 99, 182, 189, 830, 854
TasI	AATT	3 cut(s)	79, 398, 698
TauI	GCSGC	3 cut(s)	197, 270, 801
Tru1I	TTAA	1 cut(s)	701
Tru9I	TTAA	1 cut(s)	701
TscAI	CASTG	1 cut(s)	34
TseI	GCWGC	3 cut(s)	264, 722, 725
TspDTI	ATGAA	4 cut(s)	30, 369, 719, 755
TspRI	CASTG	1 cut(s)	34
VpaK11BI	GGWCC	2 cut(s)	164, 594
VspI	ATTAAT	1 cut(s)	701
XapI	RAATTY	1 cut(s)	79
XmaJI	CCTAGG	2 cut(s)	46, 160
XspI	CTAG	6 cut(s)	47, 161, 297, 435, 591, 910

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.