Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003573

Physical Location & Seq

Genomic Coordinates Forward (+)

20453336 .. 20454563

Gene Structure 1228 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017725

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGGTTTTGATGATCCTCATGCTTGTAACACAGGCCTTGTCTTAGGTTTAGGTCTCACAGCTTCCCAAGAGAGCTCCAGTCCTACTCCACAAAAGGCTCACCATCAGATGAATCCCATGCTCAAGAAGCCTAATTCCTATTTAACTTTGGGTCTCTTTGGAAATAGTTTTCATGAGGATGATCATCAAGGGAATAGTCTTGATTTGTATAGGCAAGGGTCTCCTCATAATAGTCATAGCGCAGTTTCTAATTCCTTCTCGAGTGGTAGAGTGGTCAAGAGGGAGAGAGACCTCAGCAGTGAGGAGGTTGAGGTTGAGAAGGTCTCTTCCAGAGTGATTAGTGATGAAGATGAAGATGGTCCTAATGCAAGAAAGAAGCTCAGGCTCACCAAAGAACAATCTGCGCTCTTAGAAGAAAGCTTCAAACAACACAGCACTCTCAATCCTAAGCAAAAGCAAGCTTTAGCCAGGCAGTTAAGTTTGAGGCCTCGACAAGTAGAAGTTTGGTTCCAAAACAGGAGGGCCAGGACAAAGCTTAAGCAAACTGAGGTGGACTGTGAGTTCTTGAAGAAATGCTGTGAGACTCTGACAGATGAGAACCGGAGGCTACAGAAAGAGGTACAAGAACTCAAGGCACTGAAACTCAGCCAACAACAACCGTTGTTCATGCACATGCCGGCGGCGACTCTCACCATGTGTCCTTCCTGTGAAAGGATCGGAGGCGTGGGAAGCGAAGGTGCTAATTCAAATAAGAGCCCGTTTTCAATTGCTCATACAAAGCCTCACTTCTATAATCCCTTCACCAATTCTTCTGCAGCTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009738 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033993 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

275

Amino Acids

30.69

Weight (kDa)

8.63

Isoelectric Point (pI)

55.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	124 - 178	1.2e-15	Homeodomain
HALZ	PF02183	180 - 214	1.1e-10	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22800 AT4G37790
fragaria_vesca	FvH4_1g18530 FvH4_2g32410
malus_domestica	MD02G1192800.v1.1 MD08G1075400.v1.1 MD08G1075500.v1.1 MD15G1062900.v1.1 MD15G1302900.v1.1
prunus_persica	Prupe.1G416800_v2.0.a1 Prupe.6G213800_v2.0.a1
pyrus_communis	pycom02g15660 pycom08g06230 pycom15g05950 pycom15g26620
rosa_chinensis	RchiOBHm_Chr2g0109191 RchiOBHm_Chr6g0310291
rosa_laevigata	RLG00000010494 RLG00000017725
rosa_multiflora	Rmu_sc0002348.1_g000019 Rmu_sc0002348.1_g000020 Rmu_sc0009436.1_g000008
rosa_roxburghii	Rroxscaffold_2G00134400 Rroxscaffold_7G00158690
rosa_rugosa	Rorug02G0158300 Rorug06G0378500
rosa_samantha	Rh2AG209900 Rh2BG220300 Rh2CG212300 Rh2DG216100 Rh6AG492900 Rh6BG502500 Rh6CG507500 Rh6DG493600
rosa_wichuraiana	Rw6G042890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	680
AclWI	GGATC	2 cut(s)	8, 722
AdeI	CACNNNGTG	1 cut(s)	696
AfaI	GTAC	1 cut(s)	621
AfiI	CCNNNNNNNGG	1 cut(s)	711
AflII	CTTAAG	1 cut(s)	536
AgsI	TTSAA	4 cut(s)	424, 568, 747, 765
AjnI	CCWGG	2 cut(s)	467, 524
AloI	GAACNNNNNNTCC	2 cut(s)	545, 577
AluBI	AGCT	7 cut(s)	62, 75, 379, 420, 461, 535, 818
AluI	AGCT	7 cut(s)	62, 75, 379, 420, 461, 535, 818
Alw21I	GWGCWC	1 cut(s)	77
Alw26I	GTCTC	6 cut(s)	59, 158, 225, 282, 328, 575
AlwI	GGATC	2 cut(s)	8, 722
Ama87I	CYCGRG	1 cut(s)	259
AoxI	GGCC	3 cut(s)	34, 485, 522
ApeKI	GCWGC	1 cut(s)	815
AspLEI	GCGC	2 cut(s)	242, 406
AspS9I	GGNCC	2 cut(s)	359, 522
AsuHPI	GGTGA	4 cut(s)	92, 379, 682, 793
AvaI	CYCGRG	1 cut(s)	259
AvaII	GGWCC	1 cut(s)	359
BanII	GRGCYC	2 cut(s)	77, 758
Bbv12I	GWGCWC	1 cut(s)	77
BbvCI	CCTCAGC	1 cut(s)	293
BccI	CCATC	2 cut(s)	111, 350
BciT130I	CCWGG	2 cut(s)	469, 526
BclI	TGATCA	1 cut(s)	181
BcoDI	GTCTC	6 cut(s)	59, 158, 225, 282, 328, 575
BfmI	CTRYAG	2 cut(s)	608, 813
BfrI	CTTAAG	1 cut(s)	536
BisI	GCNGC	2 cut(s)	681, 816
BlsI	GCNGC	2 cut(s)	682, 817
Bme1390I	CCNGG	2 cut(s)	469, 526
Bme18I	GGWCC	1 cut(s)	359
BmeT110I	CYCGRG	1 cut(s)	259
BmgT120I	GGNCC	2 cut(s)	359, 522
BmiI	GGNNCC	1 cut(s)	509
BmrFI	CCNGG	2 cut(s)	469, 526
BplI	GAGNNNNNCTC	2 cut(s)	308, 340
BpmI	CTGGAG	1 cut(s)	61
Bpu10I	CCTNAGC	3 cut(s)	293, 380, 447
BpuEI	CTTGAG	2 cut(s)	107, 614
BsaBI	GATNNNNATC	1 cut(s)	183
BsaI	GGTCTC	5 cut(s)	59, 158, 225, 282, 328
BsaWI	WCCGGW	1 cut(s)	600
Bsc4I	CCNNNNNNNGG	1 cut(s)	711
Bse118I	RCCGGY	1 cut(s)	676
Bse1I	ACTGG	1 cut(s)	78
Bse8I	GATNNNNATC	1 cut(s)	183
BseBI	CCWGG	2 cut(s)	469, 526
BseGI	GGATG	1 cut(s)	184
BseJI	GATNNNNATC	1 cut(s)	183
BseLI	CCNNNNNNNGG	1 cut(s)	711
BseMII	CTCAG	4 cut(s)	307, 394, 537, 658
BseNI	ACTGG	1 cut(s)	78
BseRI	GAGGAG	2 cut(s)	213, 317
BshFI	GGCC	3 cut(s)	36, 487, 524
BsiHKAI	GWGCWC	1 cut(s)	77
BsiHKCI	CYCGRG	1 cut(s)	259
BsiSI	CCGG	2 cut(s)	601, 677
BslI	CCNNNNNNNGG	1 cut(s)	711
BsmAI	GTCTC	6 cut(s)	59, 158, 225, 282, 328, 575
BsnI	GGCC	3 cut(s)	36, 487, 524
Bso31I	GGTCTC	5 cut(s)	59, 158, 225, 282, 328
BsoBI	CYCGRG	1 cut(s)	259
Bsp1286I	GDGCHC	2 cut(s)	77, 758
Bsp143I	GATC	3 cut(s)	13, 181, 714
BspACI	CCGC	1 cut(s)	680
BspANI	GGCC	3 cut(s)	36, 487, 524
BspCNI	CTCAG	4 cut(s)	306, 393, 538, 657
BspHI	TCATGA	1 cut(s)	172
BspLI	GGNNCC	1 cut(s)	509
BspMAI	CTGCAG	1 cut(s)	817
BspPI	GGATC	2 cut(s)	8, 722
BspTI	CTTAAG	1 cut(s)	536
BspTNI	GGTCTC	5 cut(s)	59, 158, 225, 282, 328
BsrFI	RCCGGY	1 cut(s)	676
BsrI	ACTGG	1 cut(s)	78
BssAI	RCCGGY	1 cut(s)	676
BssMI	GATC	3 cut(s)	13, 181, 714
Bst2UI	CCWGG	2 cut(s)	469, 526
Bst4CI	ACNGT	2 cut(s)	557, 660
Bst6I	CTCTTC	1 cut(s)	331
BstAFI	CTTAAG	1 cut(s)	536
BstC8I	GCNNGC	2 cut(s)	459, 678
BstDEI	CTNAG	7 cut(s)	43, 293, 380, 409, 447, 546, 644
BstENI	CCTNNNNNAGG	1 cut(s)	709
BstF5I	GGATG	1 cut(s)	184
BstHHI	GCGC	2 cut(s)	242, 406
BstKTI	GATC	3 cut(s)	16, 184, 717
BstMAI	GTCTC	6 cut(s)	59, 158, 225, 282, 328, 575
BstMBI	GATC	3 cut(s)	13, 181, 714
BstMWI	GCNNNNNNNGC	2 cut(s)	127, 729
BstNI	CCWGG	2 cut(s)	469, 526
BstNSI	RCATGY	1 cut(s)	676
BstSCI	CCNGG	2 cut(s)	467, 524
BstSFI	CTRYAG	2 cut(s)	608, 813
BsuRI	GGCC	3 cut(s)	36, 487, 524
BtsCI	GGATG	1 cut(s)	184
BtsI	GCAGTG	1 cut(s)	304
BtsIMutI	CAGTG	2 cut(s)	304, 635
Cac8I	GCNNGC	2 cut(s)	459, 678
CciI	TCATGA	1 cut(s)	172
CfoI	GCGC	2 cut(s)	242, 406
Cfr10I	RCCGGY	1 cut(s)	676
Cfr13I	GGNCC	2 cut(s)	359, 522
Csp6I	GTAC	1 cut(s)	620
CviAII	CATG	6 cut(s)	20, 118, 173, 667, 673, 694
CviQI	GTAC	1 cut(s)	620
DdeI	CTNAG	7 cut(s)	43, 293, 380, 409, 447, 546, 644
DpnI	GATC	3 cut(s)	15, 183, 716
DpnII	GATC	3 cut(s)	13, 181, 714
DraIII	CACNNNGTG	1 cut(s)	696
Eam1104I	CTCTTC	1 cut(s)	331
EarI	CTCTTC	1 cut(s)	331
Ecl136II	GAGCTC	1 cut(s)	75
Eco147I	AGGCCT	2 cut(s)	36, 487
Eco24I	GRGCYC	2 cut(s)	77, 758
Eco31I	GGTCTC	5 cut(s)	59, 158, 225, 282, 328
Eco47I	GGWCC	1 cut(s)	359
Eco53kI	GAGCTC	1 cut(s)	75
Eco88I	CYCGRG	1 cut(s)	259
EcoICRI	GAGCTC	1 cut(s)	75
EcoNI	CCTNNNNNAGG	1 cut(s)	709
EcoRII	CCWGG	2 cut(s)	467, 524
EcoT38I	GRGCYC	2 cut(s)	77, 758
FaeI	CATG	6 cut(s)	23, 121, 176, 670, 676, 697
FalI	AAGNNNNNCTT	2 cut(s)	770, 802
FatI	CATG	6 cut(s)	19, 117, 172, 666, 672, 693
FbaI	TGATCA	1 cut(s)	181
Fnu4HI	GCNGC	2 cut(s)	681, 816
FokI	GGATG	1 cut(s)	191
FriOI	GRGCYC	2 cut(s)	77, 758
Fsp4HI	GCNGC	2 cut(s)	681, 816
GlaI	GCGC	2 cut(s)	241, 405
GluI	GCNGC	2 cut(s)	681, 816
GsuI	CTGGAG	1 cut(s)	61
HaeIII	GGCC	3 cut(s)	36, 487, 524
HapII	CCGG	2 cut(s)	601, 677
HhaI	GCGC	2 cut(s)	242, 406
Hin1II	CATG	6 cut(s)	23, 121, 176, 670, 676, 697
Hin6I	GCGC	2 cut(s)	240, 404
HinP1I	GCGC	2 cut(s)	240, 404
HindIII	AAGCTT	3 cut(s)	418, 459, 533
HinfI	GANTC	3 cut(s)	112, 583, 685
HpaII	CCGG	2 cut(s)	601, 677
HphI	GGTGA	4 cut(s)	92, 379, 682, 793
Hpy166II	GTNNAC	1 cut(s)	553
Hpy188I	TCNGA	3 cut(s)	108, 588, 719
Hpy188III	TCNNGA	7 cut(s)	124, 173, 200, 259, 277, 330, 565
Hpy8I	GTNNAC	1 cut(s)	553
HpyAV	CCTTC	5 cut(s)	265, 313, 711, 728, 808
HpyCH4III	ACNGT	2 cut(s)	557, 660
HpyCH4V	TGCA	3 cut(s)	368, 670, 815
HpyF10VI	GCNNNNNNNGC	2 cut(s)	127, 729
HpyF3I	CTNAG	7 cut(s)	43, 293, 380, 409, 447, 546, 644
Hsp92II	CATG	6 cut(s)	23, 121, 176, 670, 676, 697
HspAI	GCGC	2 cut(s)	240, 404
KroI	GCCGGC	1 cut(s)	676
KroNI	GCCGGC	1 cut(s)	678
Ksp22I	TGATCA	1 cut(s)	181
Kzo9I	GATC	3 cut(s)	13, 181, 714
LmnI	GCTCC	1 cut(s)	80
MaeIII	GTNAC	1 cut(s)	26
MalI	GATC	3 cut(s)	15, 183, 716
MboI	GATC	3 cut(s)	13, 181, 714
MboII	GAAGA	6 cut(s)	318, 359, 365, 425, 580, 801
MfeI	CAATTG	1 cut(s)	765
MhlI	GDGCHC	2 cut(s)	77, 758
MluCI	AATT	5 cut(s)	133, 250, 742, 765, 805
MlyI	GAGTC	2 cut(s)	577, 679
MroNI	GCCGGC	1 cut(s)	676
MseI	TTAA	4 cut(s)	143, 476, 537, 823
MslI	CAYNNNNRTG	2 cut(s)	177, 671
MspCI	CTTAAG	1 cut(s)	536
MspI	CCGG	2 cut(s)	601, 677
MspR9I	CCNGG	2 cut(s)	469, 526
MunI	CAATTG	1 cut(s)	765
MvaI	CCWGG	2 cut(s)	469, 526
MwoI	GCNNNNNNNGC	2 cut(s)	127, 729
NaeI	GCCGGC	1 cut(s)	678
NdeII	GATC	3 cut(s)	13, 181, 714
NgoMIV	GCCGGC	1 cut(s)	676
NlaIII	CATG	6 cut(s)	23, 121, 176, 670, 676, 697
NlaIV	GGNNCC	1 cut(s)	509
NspI	RCATGY	1 cut(s)	676
PaeR7I	CTCGAG	1 cut(s)	259
PagI	TCATGA	1 cut(s)	172
PceI	AGGCCT	2 cut(s)	36, 487
PdiI	GCCGGC	1 cut(s)	678
PfeI	GAWTC	1 cut(s)	112
PkrI	GCNGC	2 cut(s)	682, 817
PleI	GAGTC	2 cut(s)	577, 679
PpsI	GAGTC	2 cut(s)	577, 679
Psp124BI	GAGCTC	1 cut(s)	77
Psp6I	CCWGG	2 cut(s)	467, 524
PspGI	CCWGG	2 cut(s)	467, 524
PspN4I	GGNNCC	1 cut(s)	509
PspPI	GGNCC	2 cut(s)	359, 522
PstI	CTGCAG	1 cut(s)	817
RsaI	GTAC	1 cut(s)	621
RsaNI	GTAC	1 cut(s)	620
RseI	CAYNNNNRTG	2 cut(s)	177, 671
SacI	GAGCTC	1 cut(s)	77
SaqAI	TTAA	4 cut(s)	143, 476, 537, 823
SatI	GCNGC	2 cut(s)	681, 816
Sau3AI	GATC	3 cut(s)	13, 181, 714
Sau96I	GGNCC	2 cut(s)	359, 522
SchI	GAGTC	2 cut(s)	577, 679
ScrFI	CCNGG	2 cut(s)	469, 526
SduI	GDGCHC	2 cut(s)	77, 758
SfcI	CTRYAG	2 cut(s)	608, 813
Sfr274I	CTCGAG	1 cut(s)	259
SinI	GGWCC	1 cut(s)	359
SlaI	CTCGAG	1 cut(s)	259
SmiMI	CAYNNNNRTG	2 cut(s)	177, 671
SmlI	CTYRAG	4 cut(s)	122, 259, 536, 629
SmoI	CTYRAG	4 cut(s)	122, 259, 536, 629
Sse9I	AATT	5 cut(s)	133, 250, 742, 765, 805
SseBI	AGGCCT	2 cut(s)	36, 487
SsiI	CCGC	1 cut(s)	680
SstI	GAGCTC	1 cut(s)	77
StuI	AGGCCT	2 cut(s)	36, 487
StyD4I	CCNGG	2 cut(s)	467, 524
TaaI	ACNGT	2 cut(s)	557, 660
TaqI	TCGA	2 cut(s)	260, 490
TasI	AATT	5 cut(s)	133, 250, 742, 765, 805
TauI	GCSGC	1 cut(s)	683
TfiI	GAWTC	1 cut(s)	112
Tru1I	TTAA	4 cut(s)	143, 476, 537, 823
Tru9I	TTAA	4 cut(s)	143, 476, 537, 823
TscAI	CASTG	2 cut(s)	304, 642
TseI	GCWGC	1 cut(s)	815
TspDTI	ATGAA	5 cut(s)	125, 161, 360, 366, 655
TspRI	CASTG	2 cut(s)	304, 642
Vha464I	CTTAAG	1 cut(s)	536
VpaK11BI	GGWCC	1 cut(s)	359
XagI	CCTNNNNNAGG	1 cut(s)	709
XceI	RCATGY	1 cut(s)	676
XhoI	CTCGAG	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.