Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0003573

Physical Location & Seq

Genomic Coordinates Forward (+)

12572779 .. 12574535

Gene Structure 1757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g15660.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGTGTTTCCCACTGCCATGGGATTCTAGCAGCAAGCATATATCCACCCACCCACCCACCCAGCGCCCCCACAAATGTCTCATTCCTAATTCTCTCTCTAAAACTCATAACACACACCCTTTTGCTCCCATAACTTCAACCATATATATTATCTCTCCCAACCCCCCATTTCACATAACAAACCCCCAATTACATCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCTTCTGCCAAATGGGTTTCGATGATCATGCTTGCAACACAGGCCTTGTCTTAGGGTTAGGTCTGATGTCGTCTGCTCCTCAGGAGAGTTGTAACCTTACAAAGTTTGCAAAGAATAATATTAAGCCTTCCCTAAATTCTGCTCCAACAAGTAGTGCTTTTGAGCCATCTTTAACTTTAGGTCTTTATGGTGAGCCATATCATCAACAAACAGTAGCCTCCAATATTTACAAGGTTGGTAATTCTTCTCAGGAGGAAGCAATTGATTTGTACAGGCAAGCTGCTGCAGCGTCCTCTCCTCACAGTCATAGCGCAGTCTCTAACTCCTTCTCTAGTGGTAGAGTGGTCAAGAGGGAGAGAGACCTCAGCAGTGAAGAGGTTGATGTCGATGAGAAAGTCTCCTCAAGAGTGAGTGATGAAGATGAAGACGGTTGTAATGCTAGAAAGAAGCTCAGGCTCACCAAGGAACAATCTGCTCTCTTAGAGGAAAGCTTCAAACAACATAGCACTCTCAATCCTAAGCAAAAGCAAGCTTTAGCCAGGCAGTTAAACTTGAGGCCAAGACAAGTGGAAGTATGGTTCCAAAATAGGAGAGCCAGGACAAAGCTTAAGCAAACTGAGGTAGACTGTGAGTTCTTGAAGAAGTGCTGTGAAACACTAACAGATGAGAACAGAAGGCTACAAAAAGAGCTGCAAGAACTGAAGGCACTCAAATTAAACCAACCTTTGTACATGCATATGCCAACAGCCACCCTCACTATGTGTCCATCTTGTGAAAGAATCGGAGGTGCGGGTAGTGAGGGATCGATCCAAGAGCCCATTTTCTATGGCTCCAAAGCCTCACTTTTACAATCACTTTACCAATCCCTCAGCAGCTTGTTGATTAGAATATTAGTTACTATTTGTGGTAGGATTAGATTTATAAGAAGAAGAAAAAAAAAGAAAGAGAAATCAAACCCTCATGATCCCTATATTTTTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009738 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033993 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

402

Amino Acids

45.13

Weight (kDa)

9.17

Isoelectric Point (pI)

61.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22800 AT4G37790
fragaria_vesca	FvH4_1g18530 FvH4_2g32410
malus_domestica	MD02G1192800.v1.1 MD08G1075400.v1.1 MD08G1075500.v1.1 MD15G1062900.v1.1 MD15G1302900.v1.1
prunus_persica	Prupe.1G416800_v2.0.a1 Prupe.6G213800_v2.0.a1
pyrus_communis	pycom02g15660 pycom08g06230 pycom15g05950 pycom15g26620
rosa_chinensis	RchiOBHm_Chr2g0109191 RchiOBHm_Chr6g0310291
rosa_laevigata	RLG00000010494 RLG00000017725
rosa_multiflora	Rmu_sc0002348.1_g000019 Rmu_sc0002348.1_g000020 Rmu_sc0009436.1_g000008
rosa_roxburghii	Rroxscaffold_2G00134400 Rroxscaffold_7G00158690
rosa_rugosa	Rorug02G0158300 Rorug06G0378500
rosa_samantha	Rh2AG209900 Rh2BG220300 Rh2CG212300 Rh2DG216100 Rh6AG492900 Rh6BG502500 Rh6CG507500 Rh6DG493600
rosa_wichuraiana	Rw6G042890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1145
AccI	GTMKAC	1 cut(s)	846
AciI	CCGC	1 cut(s)	1013
AclWI	GGATC	3 cut(s)	1024, 1033, 1181
AcsI	RAATTY	1 cut(s)	358
AcuI	CTGAAG	1 cut(s)	944
AdeI	CACNNNGTG	1 cut(s)	984
AfaI	GTAC	2 cut(s)	494, 953
AflII	CTTAAG	1 cut(s)	830
AgsI	TTSAA	3 cut(s)	138, 718, 862
AjnI	CCWGG	2 cut(s)	761, 818
AloI	GAACNNNNNNTCC	2 cut(s)	785, 817
AluBI	AGCT	7 cut(s)	503, 673, 714, 755, 829, 913, 1098
AluI	AGCT	7 cut(s)	503, 673, 714, 755, 829, 913, 1098
Alw26I	GTCTC	4 cut(s)	83, 544, 576, 625
AlwI	GGATC	3 cut(s)	1024, 1033, 1181
AoxI	GGCC	2 cut(s)	265, 779
ApeKI	GCWGC	6 cut(s)	30, 503, 506, 509, 913, 1095
ApoI	RAATTY	1 cut(s)	358
AspLEI	GCGC	2 cut(s)	66, 536
AsuHPI	GGTGA	2 cut(s)	425, 673
AxyI	CCTNAGG	1 cut(s)	303
BanII	GRGCYC	1 cut(s)	1041
BbsI	GAAGAC	1 cut(s)	654
BbvCI	CCTCAGC	2 cut(s)	587, 1091
BbvI	GCAGC	6 cut(s)	42, 490, 493, 521, 900, 1107
BccI	CCATC	2 cut(s)	397, 997
BcgI	CGANNNNNNTGC	2 cut(s)	233, 267
BciT130I	CCWGG	2 cut(s)	763, 820
BclI	TGATCA	1 cut(s)	247
BcoDI	GTCTC	4 cut(s)	83, 544, 576, 625
BfaI	CTAG	3 cut(s)	27, 555, 663
BfmI	CTRYAG	1 cut(s)	507
BfoI	RGCGCY	1 cut(s)	67
BfrI	CTTAAG	1 cut(s)	830
BisI	GCNGC	6 cut(s)	31, 504, 507, 510, 914, 1096
BlsI	GCNGC	6 cut(s)	32, 505, 508, 511, 915, 1097
Bme1390I	CCNGG	2 cut(s)	763, 820
BmiI	GGNNCC	2 cut(s)	803, 1054
BmrFI	CCNGG	2 cut(s)	763, 820
BpiI	GAAGAC	1 cut(s)	654
BplI	GAGNNNNNCTC	2 cut(s)	605, 637
Bpu10I	CCTNAGC	4 cut(s)	587, 674, 741, 1091
BpuEI	CTTGAG	2 cut(s)	610, 796
Bsa29I	ATCGAT	1 cut(s)	1028
BsaI	GGTCTC	1 cut(s)	576
BsaJI	CCNNGG	2 cut(s)	17, 684
BsaXI	ACNNNNNCTCC	2 cut(s)	183, 213
Bse21I	CCTNAGG	1 cut(s)	303
BseBI	CCWGG	2 cut(s)	763, 820
BseCI	ATCGAT	1 cut(s)	1028
BseDI	CCNNGG	2 cut(s)	17, 684
BseMII	CTCAG	6 cut(s)	317, 485, 601, 688, 831, 1105
BseXI	GCAGC	6 cut(s)	42, 490, 493, 521, 900, 1107
BseYI	CCCAGC	1 cut(s)	60
BshFI	GGCC	2 cut(s)	267, 781
BshVI	ATCGAT	1 cut(s)	1028
BsmAI	GTCTC	4 cut(s)	83, 544, 576, 625
BsnI	GGCC	2 cut(s)	267, 781
Bso31I	GGTCTC	1 cut(s)	576
Bsp1286I	GDGCHC	1 cut(s)	1041
Bsp1407I	TGTACA	2 cut(s)	492, 951
Bsp143I	GATC	4 cut(s)	247, 1025, 1029, 1186
Bsp19I	CCATGG	1 cut(s)	17
BspACI	CCGC	1 cut(s)	1013
BspANI	GGCC	2 cut(s)	267, 781
BspCNI	CTCAG	6 cut(s)	316, 484, 600, 687, 832, 1104
BspDI	ATCGAT	1 cut(s)	1028
BspHI	TCATGA	1 cut(s)	1183
BspLI	GGNNCC	2 cut(s)	803, 1054
BspMAI	CTGCAG	1 cut(s)	511
BspPI	GGATC	3 cut(s)	1024, 1033, 1181
BspTI	CTTAAG	1 cut(s)	830
BspTNI	GGTCTC	1 cut(s)	576
BsrGI	TGTACA	2 cut(s)	492, 951
BssECI	CCNNGG	2 cut(s)	17, 684
BssMI	GATC	4 cut(s)	247, 1025, 1029, 1186
BssT1I	CCWWGG	2 cut(s)	17, 684
Bst2UI	CCWGG	2 cut(s)	763, 820
Bst4CI	ACNGT	4 cut(s)	436, 527, 653, 851
Bst6I	CTCTTC	2 cut(s)	227, 591
BstAFI	CTTAAG	1 cut(s)	830
BstAUI	TGTACA	2 cut(s)	492, 951
BstC8I	GCNNGC	4 cut(s)	35, 256, 501, 753
BstDEI	CTNAG	9 cut(s)	274, 303, 471, 587, 674, 703, 741, 840, 1091
BstDSI	CCRYGG	1 cut(s)	17
BstH2I	RGCGCY	1 cut(s)	67
BstHHI	GCGC	2 cut(s)	66, 536
BstKTI	GATC	4 cut(s)	250, 1028, 1032, 1189
BstMAI	GTCTC	4 cut(s)	83, 544, 576, 625
BstMBI	GATC	4 cut(s)	247, 1025, 1029, 1186
BstMWI	GCNNNNNNNGC	2 cut(s)	264, 509
BstNI	CCWGG	2 cut(s)	763, 820
BstNSI	RCATGY	1 cut(s)	958
BstSCI	CCNGG	2 cut(s)	761, 818
BstSFI	CTRYAG	1 cut(s)	507
BstV1I	GCAGC	6 cut(s)	42, 490, 493, 521, 900, 1107
BstV2I	GAAGAC	1 cut(s)	654
BstXI	CCANNNNNNTGG	1 cut(s)	18
Bsu15I	ATCGAT	1 cut(s)	1028
Bsu36I	CCTNAGG	1 cut(s)	303
BsuRI	GGCC	2 cut(s)	267, 781
BsuTUI	ATCGAT	1 cut(s)	1028
BtgI	CCRYGG	1 cut(s)	17
BtsI	GCAGTG	2 cut(s)	11, 598
BtsIMutI	CAGTG	2 cut(s)	11, 598
Cac8I	GCNNGC	4 cut(s)	35, 256, 501, 753
CciI	TCATGA	1 cut(s)	1183
CfoI	GCGC	2 cut(s)	66, 536
ClaI	ATCGAT	1 cut(s)	1028
CseI	GACGC	1 cut(s)	501
Csp6I	GTAC	2 cut(s)	493, 952
CspCI	CAANNNNNGTGG	2 cut(s)	771, 806
CviAII	CATG	4 cut(s)	18, 251, 955, 1184
CviQI	GTAC	2 cut(s)	493, 952
DdeI	CTNAG	9 cut(s)	274, 303, 471, 587, 674, 703, 741, 840, 1091
DpnI	GATC	4 cut(s)	249, 1027, 1031, 1188
DpnII	GATC	4 cut(s)	247, 1025, 1029, 1186
DraIII	CACNNNGTG	1 cut(s)	984
Eam1104I	CTCTTC	2 cut(s)	227, 591
EarI	CTCTTC	2 cut(s)	227, 591
Eco130I	CCWWGG	2 cut(s)	17, 684
Eco147I	AGGCCT	1 cut(s)	267
Eco24I	GRGCYC	1 cut(s)	1041
Eco31I	GGTCTC	1 cut(s)	576
Eco57I	CTGAAG	1 cut(s)	944
Eco81I	CCTNAGG	1 cut(s)	303
EcoRII	CCWGG	2 cut(s)	761, 818
EcoT14I	CCWWGG	2 cut(s)	17, 684
EcoT22I	ATGCAT	1 cut(s)	960
EcoT38I	GRGCYC	1 cut(s)	1041
ErhI	CCWWGG	2 cut(s)	17, 684
FaeI	CATG	4 cut(s)	21, 254, 958, 1187
FalI	AAGNNNNNCTT	4 cut(s)	364, 396, 1050, 1082
FatI	CATG	4 cut(s)	17, 250, 954, 1183
FauI	CCCGC	1 cut(s)	1006
FauNDI	CATATG	1 cut(s)	960
FbaI	TGATCA	1 cut(s)	247
FblI	GTMKAC	1 cut(s)	846
Fnu4HI	GCNGC	6 cut(s)	31, 504, 507, 510, 914, 1096
FriOI	GRGCYC	1 cut(s)	1041
Fsp4HI	GCNGC	6 cut(s)	31, 504, 507, 510, 914, 1096
FspBI	CTAG	3 cut(s)	27, 555, 663
GlaI	GCGC	2 cut(s)	65, 535
GluI	GCNGC	6 cut(s)	31, 504, 507, 510, 914, 1096
GsaI	CCCAGC	1 cut(s)	64
HaeII	RGCGCY	1 cut(s)	67
HaeIII	GGCC	2 cut(s)	267, 781
HgaI	GACGC	1 cut(s)	501
HhaI	GCGC	2 cut(s)	66, 536
Hin1II	CATG	4 cut(s)	21, 254, 958, 1187
Hin6I	GCGC	2 cut(s)	64, 534
HinP1I	GCGC	2 cut(s)	64, 534
HindIII	AAGCTT	3 cut(s)	712, 753, 827
HinfI	GANTC	2 cut(s)	23, 1002
HphI	GGTGA	2 cut(s)	425, 673
Hpy166II	GTNNAC	1 cut(s)	847
Hpy188I	TCNGA	2 cut(s)	288, 1007
Hpy188III	TCNNGA	6 cut(s)	305, 473, 571, 627, 859, 1184
Hpy8I	GTNNAC	1 cut(s)	847
HpyAV	CCTTC	4 cut(s)	360, 559, 891, 919
HpyCH4III	ACNGT	4 cut(s)	436, 527, 653, 851
HpyCH4V	TGCA	5 cut(s)	258, 332, 509, 916, 958
HpyF10VI	GCNNNNNNNGC	2 cut(s)	264, 509
HpyF3I	CTNAG	9 cut(s)	274, 303, 471, 587, 674, 703, 741, 840, 1091
Hsp92II	CATG	4 cut(s)	21, 254, 958, 1187
HspAI	GCGC	2 cut(s)	64, 534
Ksp22I	TGATCA	1 cut(s)	247
Kzo9I	GATC	4 cut(s)	247, 1025, 1029, 1186
LmnI	GCTCC	4 cut(s)	130, 304, 370, 1058
Lsp1109I	GCAGC	6 cut(s)	42, 490, 493, 521, 900, 1107
MaeI	CTAG	3 cut(s)	27, 555, 663
MaeIII	GTNAC	2 cut(s)	314, 1117
MalI	GATC	4 cut(s)	249, 1027, 1031, 1188
MboI	GATC	4 cut(s)	247, 1025, 1029, 1186
MboII	GAAGA	9 cut(s)	214, 217, 459, 608, 653, 659, 874, 1161, 1164
MfeI	CAATTG	1 cut(s)	483
MhlI	GDGCHC	1 cut(s)	1041
MluCI	AATT	6 cut(s)	88, 188, 358, 463, 483, 935
MmeI	TCCRAC	1 cut(s)	392
Mph1103I	ATGCAT	1 cut(s)	960
MseI	TTAA	6 cut(s)	345, 395, 770, 831, 938, 1204
MslI	CAYNNNNRTG	2 cut(s)	16, 959
MspCI	CTTAAG	1 cut(s)	830
MspR9I	CCNGG	2 cut(s)	763, 820
MunI	CAATTG	1 cut(s)	483
MvaI	CCWGG	2 cut(s)	763, 820
MwoI	GCNNNNNNNGC	2 cut(s)	264, 509
NcoI	CCATGG	1 cut(s)	17
NdeI	CATATG	1 cut(s)	960
NdeII	GATC	4 cut(s)	247, 1025, 1029, 1186
NlaIII	CATG	4 cut(s)	21, 254, 958, 1187
NlaIV	GGNNCC	2 cut(s)	803, 1054
NsiI	ATGCAT	1 cut(s)	960
NspI	RCATGY	1 cut(s)	958
PagI	TCATGA	1 cut(s)	1183
PceI	AGGCCT	1 cut(s)	267
PfeI	GAWTC	2 cut(s)	23, 1002
PkrI	GCNGC	6 cut(s)	32, 505, 508, 511, 915, 1097
PsiI	TTATAA	1 cut(s)	1145
Psp6I	CCWGG	2 cut(s)	761, 818
PspFI	CCCAGC	1 cut(s)	60
PspGI	CCWGG	2 cut(s)	761, 818
PspN4I	GGNNCC	2 cut(s)	803, 1054
PstI	CTGCAG	1 cut(s)	511
RsaI	GTAC	2 cut(s)	494, 953
RsaNI	GTAC	2 cut(s)	493, 952
RseI	CAYNNNNRTG	2 cut(s)	16, 959
SaqAI	TTAA	6 cut(s)	345, 395, 770, 831, 938, 1204
SatI	GCNGC	6 cut(s)	31, 504, 507, 510, 914, 1096
Sau3AI	GATC	4 cut(s)	247, 1025, 1029, 1186
ScrFI	CCNGG	2 cut(s)	763, 820
SduI	GDGCHC	1 cut(s)	1041
SfcI	CTRYAG	1 cut(s)	507
SmiMI	CAYNNNNRTG	2 cut(s)	16, 959
SmlI	CTYRAG	3 cut(s)	625, 775, 830
SmoI	CTYRAG	3 cut(s)	625, 775, 830
Sse9I	AATT	6 cut(s)	88, 188, 358, 463, 483, 935
SseBI	AGGCCT	1 cut(s)	267
SsiI	CCGC	1 cut(s)	1013
SspI	AATATT	3 cut(s)	343, 448, 1113
SspMI	CTAG	3 cut(s)	27, 555, 663
StuI	AGGCCT	1 cut(s)	267
StyD4I	CCNGG	2 cut(s)	761, 818
StyI	CCWWGG	2 cut(s)	17, 684
TaaI	ACNGT	4 cut(s)	436, 527, 653, 851
TaqI	TCGA	3 cut(s)	243, 609, 1028
TasI	AATT	6 cut(s)	88, 188, 358, 463, 483, 935
TatI	WGTACW	2 cut(s)	492, 951
TfiI	GAWTC	2 cut(s)	23, 1002
Tru1I	TTAA	6 cut(s)	345, 395, 770, 831, 938, 1204
Tru9I	TTAA	6 cut(s)	345, 395, 770, 831, 938, 1204
TscAI	CASTG	2 cut(s)	18, 598
TseI	GCWGC	6 cut(s)	30, 503, 506, 509, 913, 1095
TspDTI	ATGAA	2 cut(s)	654, 660
TspRI	CASTG	2 cut(s)	18, 598
Vha464I	CTTAAG	1 cut(s)	830
XapI	RAATTY	1 cut(s)	358
XceI	RCATGY	1 cut(s)	958
XmiI	GTMKAC	1 cut(s)	846
XspI	CTAG	3 cut(s)	27, 555, 663
Zsp2I	ATGCAT	1 cut(s)	960

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.