Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003573

Physical Location & Seq

Genomic Coordinates Reverse (-)

3618851 .. 3620122

Gene Structure 1272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g05950.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGGTTTTGATCATGAAGCTTGTAACACTGGCCTTGGACTCAGCCTAGGTTGTCAAGCTAATCCAGATCATCATACAAATTTGCGGGCTTTCGATCTCGATCACCAAAAGAAGAAGAAAATACAGTTGAAATACGATCACCTATTTCCGGCTCTAACCCTAGGTCCATCATCCGGGGATTCGAAGATTGAGGCCGCCGAATCAGATGATCATTTGCACCAAGTAGTACATGTGCAAGCACAAGAACAGGTCTCTTCTCCCTGCAGCGGCGCCGTTTCGTCGTTCTCCAACTCATCTAGTTTCAAGAGGGACAGAGATATAGGTGTTGAAGAGATAGAGGGAGAAGAAGAGAGAGTAGTGAATATCACTACTTCATCAAGAGTAAGCGATGAATTATATGATCAAGATCATGAGGGCAGTCCCAGAAAGAAACTCAGACTTACAAAAGAACAATCTTCCACTTTAGAAGACAACTTCAGAGAACACACTACTCTCAATCCAAAACAAAAGCAAGAACTAGCAAGAAAGCTAAATCTACGCCCGCGACAAGTTGAAGTCTGGTTCCAAAACAGGAGGGCCAGAACCAAGCTGAAGCAAACAGAAGCAGATTTCGAGTTATTGAAGCAATGTTGTGAAACATTGAAAGAAGAGAACAGAAGGCTGCACAAGGAGCTGCAAGAGCTCAAATCAATGAAACAAACAGCAACAGCCGCAGCACCCTTTTACATGCAGTTTCCAACTGCCACTCTCACCATGTGTCCCTCCTGTGAGAAAATCTGCAACGGCGGCGATCATCGTAATCATAATCATAACAACGGGTCATCGACGAGTCCATTCTTAATCGGATCGAATAAGACTCACTTGATCTTCAACCCCTACAGTACTCATCCATCTACAGCTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

302

Amino Acids

34.06

Weight (kDa)

6.76

Isoelectric Point (pI)

58.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22800 AT4G37790
fragaria_vesca	FvH4_1g18530 FvH4_2g32410
malus_domestica	MD02G1192800.v1.1 MD08G1075400.v1.1 MD08G1075500.v1.1 MD15G1062900.v1.1 MD15G1302900.v1.1
prunus_persica	Prupe.1G416800_v2.0.a1 Prupe.6G213800_v2.0.a1
pyrus_communis	pycom02g15660 pycom08g06230 pycom15g05950 pycom15g26620
rosa_chinensis	RchiOBHm_Chr2g0109191 RchiOBHm_Chr6g0310291
rosa_laevigata	RLG00000010494 RLG00000017725
rosa_multiflora	Rmu_sc0002348.1_g000019 Rmu_sc0002348.1_g000020 Rmu_sc0009436.1_g000008
rosa_roxburghii	Rroxscaffold_2G00134400 Rroxscaffold_7G00158690
rosa_rugosa	Rorug02G0158300 Rorug06G0378500
rosa_samantha	Rh2AG209900 Rh2BG220300 Rh2CG212300 Rh2DG216100 Rh6AG492900 Rh6BG502500 Rh6CG507500 Rh6DG493600
rosa_wichuraiana	Rw6G042890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	269
AccII	CGCG	1 cut(s)	544
AciI	CCGC	6 cut(s)	85, 195, 267, 542, 711, 786
AclWI	GGATC	1 cut(s)	853
AcsI	RAATTY	1 cut(s)	79
AcuI	CTGAAG	2 cut(s)	460, 611
AcyI	GRCGYC	1 cut(s)	270
AdeI	CACNNNGTG	1 cut(s)	756
AfaI	GTAC	2 cut(s)	228, 883
AfiI	CCNNNNNNNGG	3 cut(s)	148, 173, 266
AflIII	ACRYGT	1 cut(s)	229
AgsI	TTSAA	7 cut(s)	130, 304, 329, 554, 622, 643, 871
AluBI	AGCT	7 cut(s)	20, 59, 529, 589, 673, 682, 899
AluI	AGCT	7 cut(s)	20, 59, 529, 589, 673, 682, 899
Alw21I	GWGCWC	1 cut(s)	684
Alw26I	GTCTC	1 cut(s)	256
AlwI	GGATC	1 cut(s)	853
AoxI	GGCC	3 cut(s)	31, 192, 576
ApeKI	GCWGC	4 cut(s)	264, 661, 673, 713
ApoI	RAATTY	1 cut(s)	79
AspA2I	CCTAGG	2 cut(s)	46, 160
AspLEI	GCGC	1 cut(s)	272
AspS9I	GGNCC	2 cut(s)	164, 576
AsuC2I	CCSGG	1 cut(s)	175
AsuHPI	GGTGA	3 cut(s)	95, 131, 742
AsuII	TTCGAA	1 cut(s)	182
AvaII	GGWCC	1 cut(s)	164
AvrII	CCTAGG	2 cut(s)	46, 160
BanI	GGYRCC	1 cut(s)	269
BanII	GRGCYC	1 cut(s)	684
BbsI	GAAGAC	1 cut(s)	474
Bbv12I	GWGCWC	1 cut(s)	684
BbvI	GCAGC	4 cut(s)	276, 648, 660, 725
BccI	CCATC	2 cut(s)	175, 898
BceAI	ACGGC	2 cut(s)	257, 799
BclI	TGATCA	3 cut(s)	10, 208, 400
BcnI	CCSGG	1 cut(s)	175
BcoDI	GTCTC	1 cut(s)	256
BfaI	CTAG	5 cut(s)	47, 161, 297, 518, 904
BfmI	CTRYAG	3 cut(s)	262, 877, 894
BfoI	RGCGCY	1 cut(s)	273
BisI	GCNGC	8 cut(s)	195, 265, 268, 662, 674, 711, 714, 787
BlnI	CCTAGG	2 cut(s)	46, 160
BlsI	GCNGC	8 cut(s)	196, 266, 269, 663, 675, 712, 715, 788
BmcAI	AGTACT	1 cut(s)	883
Bme1390I	CCNGG	1 cut(s)	175
Bme18I	GGWCC	1 cut(s)	164
BmgT120I	GGNCC	2 cut(s)	164, 576
BmiI	GGNNCC	2 cut(s)	271, 563
BmrFI	CCNGG	1 cut(s)	175
BpiI	GAAGAC	1 cut(s)	474
Bpu14I	TTCGAA	1 cut(s)	182
BpuMI	CCSGG	1 cut(s)	175
BsaBI	GATNNNNATC	2 cut(s)	99, 405
BsaHI	GRCGYC	1 cut(s)	270
BsaI	GGTCTC	1 cut(s)	256
BsaJI	CCNNGG	4 cut(s)	34, 46, 160, 174
Bsc4I	CCNNNNNNNGG	3 cut(s)	148, 173, 266
Bse1I	ACTGG	1 cut(s)	34
Bse3DI	GCAATG	1 cut(s)	632
Bse8I	GATNNNNATC	2 cut(s)	99, 405
BseDI	CCNNGG	4 cut(s)	34, 46, 160, 174
BseGI	GGATG	2 cut(s)	170, 886
BseJI	GATNNNNATC	2 cut(s)	99, 405
BseLI	CCNNNNNNNGG	3 cut(s)	148, 173, 266
BseMI	GCAATG	1 cut(s)	632
BseMII	CTCAG	2 cut(s)	55, 448
BseNI	ACTGG	1 cut(s)	34
BseXI	GCAGC	4 cut(s)	276, 648, 660, 725
BsgI	GTGCAG	1 cut(s)	647
Bsh1236I	CGCG	1 cut(s)	544
BshFI	GGCC	3 cut(s)	33, 194, 578
BshNI	GGYRCC	1 cut(s)	269
BsiHKAI	GWGCWC	1 cut(s)	684
BsiSI	CCGG	2 cut(s)	149, 174
BslFI	GGGAC	3 cut(s)	323, 405, 744
BslI	CCNNNNNNNGG	3 cut(s)	148, 173, 266
BsmAI	GTCTC	1 cut(s)	256
BsmFI	GGGAC	3 cut(s)	323, 405, 744
BsnI	GGCC	3 cut(s)	33, 194, 578
Bso31I	GGTCTC	1 cut(s)	256
Bsp119I	TTCGAA	1 cut(s)	182
Bsp1286I	GDGCHC	1 cut(s)	684
BspACI	CCGC	6 cut(s)	85, 195, 267, 542, 711, 786
BspANI	GGCC	3 cut(s)	33, 194, 578
BspCNI	CTCAG	2 cut(s)	54, 447
BspFNI	CGCG	1 cut(s)	544
BspHI	TCATGA	2 cut(s)	13, 409
BspLI	GGNNCC	2 cut(s)	271, 563
BspMAI	CTGCAG	1 cut(s)	266
BspPI	GGATC	1 cut(s)	853
BspT104I	TTCGAA	1 cut(s)	182
BspT107I	GGYRCC	1 cut(s)	269
BspTNI	GGTCTC	1 cut(s)	256
BsrDI	GCAATG	1 cut(s)	632
BsrI	ACTGG	1 cut(s)	34
BssECI	CCNNGG	4 cut(s)	34, 46, 160, 174
BssNI	GRCGYC	1 cut(s)	270
BssT1I	CCWWGG	3 cut(s)	34, 46, 160
Bst4CI	ACNGT	2 cut(s)	126, 881
Bst6I	CTCTTC	4 cut(s)	259, 324, 342, 642
BstACI	GRCGYC	1 cut(s)	270
BstBI	TTCGAA	1 cut(s)	182
BstC8I	GCNNGC	4 cut(s)	87, 237, 542, 901
BstDEI	CTNAG	2 cut(s)	41, 434
BstF5I	GGATG	2 cut(s)	170, 886
BstFNI	CGCG	1 cut(s)	544
BstH2I	RGCGCY	1 cut(s)	273
BstHHI	GCGC	1 cut(s)	272
BstMAI	GTCTC	1 cut(s)	256
BstMWI	GCNNNNNNNGC	4 cut(s)	670, 679, 710, 786
BstNSI	RCATGY	2 cut(s)	233, 730
BstSCI	CCNGG	1 cut(s)	173
BstSFI	CTRYAG	3 cut(s)	262, 877, 894
BstUI	CGCG	1 cut(s)	544
BstV1I	GCAGC	4 cut(s)	276, 648, 660, 725
BstV2I	GAAGAC	1 cut(s)	474
BsuRI	GGCC	3 cut(s)	33, 194, 578
BtgZI	GCGATG	1 cut(s)	402
BtsCI	GGATG	2 cut(s)	170, 886
BtsIMutI	CAGTG	1 cut(s)	27
Cac8I	GCNNGC	4 cut(s)	87, 237, 542, 901
CciI	TCATGA	2 cut(s)	13, 409
CfoI	GCGC	1 cut(s)	272
Cfr13I	GGNCC	2 cut(s)	164, 576
Csp6I	GTAC	2 cut(s)	227, 882
CviAII	CATG	5 cut(s)	14, 230, 410, 727, 754
CviQI	GTAC	2 cut(s)	227, 882
DdeI	CTNAG	2 cut(s)	41, 434
DinI	GGCGCC	1 cut(s)	271
DraIII	CACNNNGTG	1 cut(s)	756
Eam1104I	CTCTTC	4 cut(s)	259, 324, 342, 642
EarI	CTCTTC	4 cut(s)	259, 324, 342, 642
Ecl136II	GAGCTC	1 cut(s)	682
Eco130I	CCWWGG	3 cut(s)	34, 46, 160
Eco24I	GRGCYC	1 cut(s)	684
Eco31I	GGTCTC	1 cut(s)	256
Eco47I	GGWCC	1 cut(s)	164
Eco53kI	GAGCTC	1 cut(s)	682
Eco57I	CTGAAG	2 cut(s)	460, 611
EcoICRI	GAGCTC	1 cut(s)	682
EcoT14I	CCWWGG	3 cut(s)	34, 46, 160
EcoT38I	GRGCYC	1 cut(s)	684
EgeI	GGCGCC	1 cut(s)	271
EheI	GGCGCC	1 cut(s)	271
ErhI	CCWWGG	3 cut(s)	34, 46, 160
FaeI	CATG	5 cut(s)	17, 233, 413, 730, 757
FalI	AAGNNNNNCTT	2 cut(s)	845, 877
FaqI	GGGAC	3 cut(s)	323, 405, 744
FatI	CATG	5 cut(s)	13, 229, 409, 726, 753
FauI	CCCGC	2 cut(s)	78, 549
FbaI	TGATCA	3 cut(s)	10, 208, 400
Fnu4HI	GCNGC	8 cut(s)	195, 265, 268, 662, 674, 711, 714, 787
FokI	GGATG	2 cut(s)	157, 873
FriOI	GRGCYC	1 cut(s)	684
Fsp4HI	GCNGC	8 cut(s)	195, 265, 268, 662, 674, 711, 714, 787
FspBI	CTAG	5 cut(s)	47, 161, 297, 518, 904
GlaI	GCGC	1 cut(s)	271
GluI	GCNGC	8 cut(s)	195, 265, 268, 662, 674, 711, 714, 787
HaeII	RGCGCY	1 cut(s)	273
HaeIII	GGCC	3 cut(s)	33, 194, 578
HapII	CCGG	2 cut(s)	149, 174
HhaI	GCGC	1 cut(s)	272
Hin1I	GRCGYC	1 cut(s)	270
Hin1II	CATG	5 cut(s)	17, 233, 413, 730, 757
Hin6I	GCGC	1 cut(s)	270
HinP1I	GCGC	1 cut(s)	270
HindIII	AAGCTT	1 cut(s)	18
HinfI	GANTC	5 cut(s)	39, 179, 200, 829, 856
HpaII	CCGG	2 cut(s)	149, 174
HphI	GGTGA	3 cut(s)	95, 131, 742
Hpy188I	TCNGA	4 cut(s)	205, 437, 479, 845
Hpy188III	TCNNGA	7 cut(s)	14, 65, 98, 304, 378, 404, 410
Hpy99I	CGWCG	2 cut(s)	283, 829
HpyAV	CCTTC	1 cut(s)	651
HpyCH4III	ACNGT	2 cut(s)	126, 881
HpyCH4V	TGCA	7 cut(s)	217, 235, 264, 664, 676, 730, 780
HpyF10VI	GCNNNNNNNGC	4 cut(s)	670, 679, 710, 786
HpyF3I	CTNAG	2 cut(s)	41, 434
Hsp92I	GRCGYC	1 cut(s)	270
Hsp92II	CATG	5 cut(s)	17, 233, 413, 730, 757
HspAI	GCGC	1 cut(s)	270
KasI	GGCGCC	1 cut(s)	269
Ksp22I	TGATCA	3 cut(s)	10, 208, 400
LmnI	GCTCC	1 cut(s)	670
Lsp1109I	GCAGC	4 cut(s)	276, 648, 660, 725
MaeI	CTAG	5 cut(s)	47, 161, 297, 518, 904
MaeIII	GTNAC	1 cut(s)	23
MhlI	GDGCHC	1 cut(s)	684
MluCI	AATT	2 cut(s)	79, 392
Mly113I	GGCGCC	1 cut(s)	270
MlyI	GAGTC	3 cut(s)	33, 838, 850
MmeI	TCCRAC	2 cut(s)	312, 761
MnlI	CCTC	6 cut(s)	184, 300, 331, 406, 567, 772
MseI	TTAA	1 cut(s)	839
MspA1I	CMGCKG	1 cut(s)	267
MspI	CCGG	2 cut(s)	149, 174
MspR9I	CCNGG	1 cut(s)	175
MvnI	CGCG	1 cut(s)	544
MwoI	GCNNNNNNNGC	4 cut(s)	670, 679, 710, 786
NarI	GGCGCC	1 cut(s)	270
NciI	CCSGG	1 cut(s)	175
NlaIII	CATG	5 cut(s)	17, 233, 413, 730, 757
NlaIV	GGNNCC	2 cut(s)	271, 563
NspI	RCATGY	2 cut(s)	233, 730
NspV	TTCGAA	1 cut(s)	182
PagI	TCATGA	2 cut(s)	13, 409
PciI	ACATGT	1 cut(s)	229
PfeI	GAWTC	2 cut(s)	179, 200
PkrI	GCNGC	8 cut(s)	196, 266, 269, 663, 675, 712, 715, 788
PleI	GAGTC	3 cut(s)	33, 837, 850
PluTI	GGCGCC	1 cut(s)	273
PpsI	GAGTC	3 cut(s)	33, 837, 850
PscI	ACATGT	1 cut(s)	229
Psp124BI	GAGCTC	1 cut(s)	684
PspN4I	GGNNCC	2 cut(s)	271, 563
PspPI	GGNCC	2 cut(s)	164, 576
PstI	CTGCAG	1 cut(s)	266
RsaI	GTAC	2 cut(s)	228, 883
RsaNI	GTAC	2 cut(s)	227, 882
SacI	GAGCTC	1 cut(s)	684
SaqAI	TTAA	1 cut(s)	839
SatI	GCNGC	8 cut(s)	195, 265, 268, 662, 674, 711, 714, 787
Sau96I	GGNCC	2 cut(s)	164, 576
ScaI	AGTACT	1 cut(s)	883
SchI	GAGTC	3 cut(s)	33, 838, 850
ScrFI	CCNGG	1 cut(s)	175
SduI	GDGCHC	1 cut(s)	684
SfcI	CTRYAG	3 cut(s)	262, 877, 894
SfoI	GGCGCC	1 cut(s)	271
SfuI	TTCGAA	1 cut(s)	182
SinI	GGWCC	1 cut(s)	164
Sse9I	AATT	2 cut(s)	79, 392
SsiI	CCGC	6 cut(s)	85, 195, 267, 542, 711, 786
SspDI	GGCGCC	1 cut(s)	269
SspMI	CTAG	5 cut(s)	47, 161, 297, 518, 904
SstI	GAGCTC	1 cut(s)	684
StyD4I	CCNGG	1 cut(s)	173
StyI	CCWWGG	3 cut(s)	34, 46, 160
TaaI	ACNGT	2 cut(s)	126, 881
TaqI	TCGA	6 cut(s)	93, 99, 182, 612, 824, 848
TasI	AATT	2 cut(s)	79, 392
TatI	WGTACW	2 cut(s)	226, 881
TauI	GCSGC	4 cut(s)	197, 270, 713, 789
TfiI	GAWTC	2 cut(s)	179, 200
Tru1I	TTAA	1 cut(s)	839
Tru9I	TTAA	1 cut(s)	839
TscAI	CASTG	1 cut(s)	34
TseI	GCWGC	4 cut(s)	264, 661, 673, 713
TspDTI	ATGAA	4 cut(s)	30, 363, 405, 707
TspRI	CASTG	1 cut(s)	34
VpaK11BI	GGWCC	1 cut(s)	164
XapI	RAATTY	1 cut(s)	79
XceI	RCATGY	2 cut(s)	233, 730
XmaJI	CCTAGG	2 cut(s)	46, 160
XspI	CTAG	5 cut(s)	47, 161, 297, 518, 904
ZrmI	AGTACT	1 cut(s)	883

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.