AT2G24390

AIG2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0010238
Physical Location & Seq
Forward (+)
10373570 .. 10375011
1442 bp
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UTR
Exon/CDS
Intron
AT2G24390.1

Sequence Viewer

Length: 459 bp
ATGAGTGGTACAGTGACAATGCACAGTGTCTTCGTCTACGGCAGTCTCATGGCGGACGACGTCGTTCGTCTCCTCCTCAACCGTATCCCTCAAACCGCTTCCGCAACCCTCCCTGATTTCCATAGATTCAGCATCAAAGGTCGTGTTTATCCGGCGATTATACCAGCTAAGTCTGATAAAGTCTCTGGAAAGGTGTTATTTGGAATCACAGATGATGAACTTAATGTTTTAGATGAGTTTGAGGATGTTGAGTATGAAAGAGAGAATGTTCAAGTTTTGTTAACAGATAGTTCAGACGAGAAACTGCAAACAAAAACCTACGTTTGGGCCAAGAAAGATGATCCTGACCTATACGGGACATGGGATTTCGAGGAATGGAAGCAACTTCACATGGAAGGTTTCTTGAAGATGACTAAAGAATTTGCTGAAGAGTTGAATTTACCGAAATCCGAGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GGACT

Protein Analysis

152

Amino Acids

17.48

Weight (kDa)

4.66

Isoelectric Point (pI)

25.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GGACT PF06094 10 - 122 1.6e-25 Gamma-glutamyl cyclotransferase, AIG2-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 63
AccI GTMKAC 1 cut(s) 36
AciI CCGC 3 cut(s) 53, 96, 102
AclWI GGATC 1 cut(s) 335
AcsI RAATTY 2 cut(s) 419, 436
AcuI CTGAAG 1 cut(s) 447
AcyI GRCGYC 1 cut(s) 60
AfaI GTAC 1 cut(s) 10
AfiI CCNNNNNNNGG 1 cut(s) 324
AgsI TTSAA 3 cut(s) 272, 406, 436
AluBI AGCT 1 cut(s) 167
AluI AGCT 1 cut(s) 167
Alw26I GTCTC 3 cut(s) 50, 74, 187
AlwI GGATC 1 cut(s) 335
AoxI GGCC 1 cut(s) 327
ApoI RAATTY 2 cut(s) 419, 436
AspS9I GGNCC 1 cut(s) 327
BbsI GAAGAC 1 cut(s) 22
BceAI ACGGC 1 cut(s) 55
BciVI GTATCC 1 cut(s) 95
BcoDI GTCTC 3 cut(s) 50, 74, 187
BfuI GTATCC 1 cut(s) 95
BmgT120I GGNCC 1 cut(s) 327
BmsI GCATC 1 cut(s) 141
BpiI GAAGAC 1 cut(s) 22
BsaHI GRCGYC 1 cut(s) 60
Bsc4I CCNNNNNNNGG 1 cut(s) 324
BseGI GGATG 1 cut(s) 250
BseLI CCNNNNNNNGG 1 cut(s) 324
BseRI GAGGAG 2 cut(s) 62, 65
BshFI GGCC 1 cut(s) 329
BsiSI CCGG 1 cut(s) 152
BslFI GGGAC 1 cut(s) 370
BslI CCNNNNNNNGG 1 cut(s) 324
BsmAI GTCTC 3 cut(s) 50, 74, 187
BsmBI CGTCTC 1 cut(s) 74
BsmFI GGGAC 1 cut(s) 370
BsnI GGCC 1 cut(s) 329
Bsp143I GATC 1 cut(s) 340
BspACI CCGC 3 cut(s) 53, 96, 102
BspANI GGCC 1 cut(s) 329
BspPI GGATC 1 cut(s) 335
BssMI GATC 1 cut(s) 340
BssNI GRCGYC 1 cut(s) 60
Bst4CI ACNGT 3 cut(s) 13, 26, 83
Bst6I CTCTTC 1 cut(s) 423
BstACI GRCGYC 1 cut(s) 60
BstDEI CTNAG 1 cut(s) 168
BstF5I GGATG 1 cut(s) 250
BstKTI GATC 1 cut(s) 343
BstMAI GTCTC 3 cut(s) 50, 74, 187
BstMBI GATC 1 cut(s) 340
BstV2I GAAGAC 1 cut(s) 22
BsuI GTATCC 1 cut(s) 95
BsuRI GGCC 1 cut(s) 329
BtsCI GGATG 1 cut(s) 250
BtsIMutI CAGTG 2 cut(s) 18, 31
Cfr13I GGNCC 1 cut(s) 327
Csp6I GTAC 1 cut(s) 9
CviAII CATG 3 cut(s) 49, 360, 391
CviJI RGCY 2 cut(s) 167, 329
CviKI_1 RGCY 2 cut(s) 167, 329
CviQI GTAC 1 cut(s) 9
DdeI CTNAG 1 cut(s) 168
DpnI GATC 1 cut(s) 342
DpnII GATC 1 cut(s) 340
Eam1104I CTCTTC 1 cut(s) 423
EarI CTCTTC 1 cut(s) 423
EciI GGCGGA 1 cut(s) 68
Eco57I CTGAAG 1 cut(s) 447
Esp3I CGTCTC 1 cut(s) 74
FaeI CATG 3 cut(s) 52, 363, 394
FaiI YATR 8 cut(s) 50, 123, 161, 255, 352, 361, 392, 457
FaqI GGGAC 1 cut(s) 370
FatI CATG 3 cut(s) 48, 359, 390
FblI GTMKAC 1 cut(s) 36
FokI GGATG 1 cut(s) 257
HaeIII GGCC 1 cut(s) 329
HapII CCGG 1 cut(s) 152
Hin1I GRCGYC 1 cut(s) 60
Hin1II CATG 3 cut(s) 52, 363, 394
HincII GTYRAC 1 cut(s) 282
HindII GTYRAC 1 cut(s) 282
HinfI GANTC 2 cut(s) 126, 204
HpaI GTTAAC 1 cut(s) 282
HpaII CCGG 1 cut(s) 152
Hpy166II GTNNAC 2 cut(s) 37, 282
Hpy188I TCNGA 3 cut(s) 175, 295, 451
Hpy188III TCNNGA 3 cut(s) 186, 344, 403
Hpy8I GTNNAC 2 cut(s) 37, 282
Hpy99I CGWCG 2 cut(s) 62, 65
HpyAV CCTTC 1 cut(s) 389
HpyCH4III ACNGT 3 cut(s) 13, 26, 83
HpyCH4IV ACGT 2 cut(s) 60, 321
HpyCH4V TGCA 2 cut(s) 22, 307
HpyF3I CTNAG 1 cut(s) 168
HpySE526I ACGT 2 cut(s) 60, 321
Hsp92I GRCGYC 1 cut(s) 60
Hsp92II CATG 3 cut(s) 52, 363, 394
KspAI GTTAAC 1 cut(s) 282
Kzo9I GATC 1 cut(s) 340
LpnPI CCDG 5 cut(s) 126, 165, 171, 177, 357
LweI GCATC 1 cut(s) 141
MaeII ACGT 2 cut(s) 60, 321
MaeIII GTNAC 1 cut(s) 13
MalI GATC 1 cut(s) 342
MboI GATC 1 cut(s) 340
MboII GAAGA 3 cut(s) 22, 418, 440
MluCI AATT 2 cut(s) 419, 436
MnlI CCTC 6 cut(s) 83, 86, 99, 119, 235, 364
MseI TTAA 2 cut(s) 222, 281
MspI CCGG 1 cut(s) 152
NdeII GATC 1 cut(s) 340
NlaIII CATG 3 cut(s) 52, 363, 394
NmuCI GTSAC 1 cut(s) 13
PfeI GAWTC 2 cut(s) 126, 204
PflFI GACNNNGTC 1 cut(s) 59
PspPI GGNCC 1 cut(s) 327
PsyI GACNNNGTC 1 cut(s) 59
RsaI GTAC 1 cut(s) 10
RsaNI GTAC 1 cut(s) 9
SaqAI TTAA 2 cut(s) 222, 281
Sau3AI GATC 1 cut(s) 340
Sau96I GGNCC 1 cut(s) 327
SetI ASST 8 cut(s) 63, 142, 169, 195, 320, 324, 351, 400
SfaNI GCATC 1 cut(s) 141
Sse9I AATT 2 cut(s) 419, 436
SsiI CCGC 3 cut(s) 53, 96, 102
TaaI ACNGT 3 cut(s) 13, 26, 83
TaiI ACGT 2 cut(s) 63, 324
TaqI TCGA 1 cut(s) 369
TasI AATT 2 cut(s) 419, 436
TfiI GAWTC 2 cut(s) 126, 204
Tru1I TTAA 2 cut(s) 222, 281
Tru9I TTAA 2 cut(s) 222, 281
TscAI CASTG 2 cut(s) 18, 31
TseFI GTSAC 1 cut(s) 13
Tsp45I GTSAC 1 cut(s) 13
TspDTI ATGAA 2 cut(s) 231, 270
TspRI CASTG 2 cut(s) 18, 31
Tth111I GACNNNGTC 1 cut(s) 59
XapI RAATTY 2 cut(s) 419, 436
XmiI GTMKAC 1 cut(s) 36
ZraI GACGTC 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.