Rroxscaffold_7G00162830

AIG2-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0010238
Physical Location & Seq
Reverse (-)
5213171 .. 5214950
1780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00162830.1

Sequence Viewer

Length: 489 bp
ATGAGTTCAGTGGCGATGGCGAACTCTCCGAGCGCCGTCCACAACGTGTTTGTCTACGGCAGCCTGATGGCCGAGGACGTCTGTCGAGTCCTCTTAAATCGAGTCCCTCAATCCTCTAATGCTACCCTCAATGGCTATCATAGGTACAGCATCAAGGGACGTGTTTATCCGGCGATTCTCCCCGTCGAGAATAAAAAGGTGTTGCTAGGCATCACAGATCCTGAATTACATATTTTGGATGAATTTGAGGATGTTGAGTATCAGAGGAGCACTGTTGAGGATAGTTCTGAGAACTTACGAGTTCATACTTATGTTTGGAGTGACAAAAATGACCCAAACTTGTATGGAGAATGGGATTTTGAGGTATGGAAACAAAGGCACATGGAAGATTTTATCAAGATGACTTCTGGTTTCATGGAAGAGCTGGAGCAACCTGAATCAAAGCCTAGAGTTGCAACATATGAATCCTTTTATCAGCAGGATGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GGACT

Protein Analysis

162

Amino Acids

18.76

Weight (kDa)

4.82

Isoelectric Point (pI)

57.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GGACT PF06094 16 - 119 1e-19 Gamma-glutamyl cyclotransferase, AIG2-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 81
AccI GTMKAC 1 cut(s) 54
AclWI GGATC 1 cut(s) 212
AcoI YGGCCR 1 cut(s) 69
AcsI RAATTY 1 cut(s) 242
AcyI GRCGYC 1 cut(s) 78
AdeI CACNNNGTG 1 cut(s) 46
AfaI GTAC 1 cut(s) 146
AflIII ACRYGT 2 cut(s) 45, 160
AjiI CACGTC 1 cut(s) 161
AluBI AGCT 1 cut(s) 424
AluI AGCT 1 cut(s) 424
Alw21I GWGCWC 1 cut(s) 272
AlwI GGATC 1 cut(s) 212
AlwNI CAGNNNCTG 1 cut(s) 221
AoxI GGCC 1 cut(s) 69
ApeKI GCWGC 1 cut(s) 60
ApoI RAATTY 1 cut(s) 242
AspLEI GCGC 1 cut(s) 35
Bbv12I GWGCWC 1 cut(s) 272
BbvI GCAGC 1 cut(s) 72
BccI CCATC 3 cut(s) 10, 61, 476
BceAI ACGGC 2 cut(s) 20, 73
BfaI CTAG 3 cut(s) 206, 447, 487
BfoI RGCGCY 1 cut(s) 36
BisI GCNGC 1 cut(s) 61
BlsI GCNGC 1 cut(s) 62
BmgBI CACGTC 1 cut(s) 161
BmsI GCATC 2 cut(s) 159, 219
BoxI GACNNNNGTC 1 cut(s) 81
BpmI CTGGAG 1 cut(s) 446
BsaHI GRCGYC 1 cut(s) 78
BsaJI CCNNGG 1 cut(s) 72
BseDI CCNNGG 1 cut(s) 72
BseGI GGATG 3 cut(s) 244, 256, 487
BseMII CTCAG 1 cut(s) 279
BseRI GAGGAG 1 cut(s) 280
BseXI GCAGC 1 cut(s) 72
BshFI GGCC 1 cut(s) 71
BsiHKAI GWGCWC 1 cut(s) 272
BsiSI CCGG 1 cut(s) 170
BslFI GGGAC 2 cut(s) 89, 171
BsmFI GGGAC 2 cut(s) 89, 171
BsnI GGCC 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 272
Bsp143I GATC 1 cut(s) 217
BspANI GGCC 1 cut(s) 71
BspCNI CTCAG 1 cut(s) 280
BspPI GGATC 1 cut(s) 212
BspQI GCTCTTC 1 cut(s) 414
BssECI CCNNGG 1 cut(s) 72
BssMI GATC 1 cut(s) 217
BssNI GRCGYC 1 cut(s) 78
Bst4CI ACNGT 1 cut(s) 274
Bst6I CTCTTC 1 cut(s) 414
BstACI GRCGYC 1 cut(s) 78
BstDEI CTNAG 1 cut(s) 288
BstF5I GGATG 3 cut(s) 244, 256, 487
BstH2I RGCGCY 1 cut(s) 36
BstHHI GCGC 1 cut(s) 35
BstKTI GATC 1 cut(s) 220
BstMBI GATC 1 cut(s) 217
BstPAI GACNNNNGTC 1 cut(s) 81
BstV1I GCAGC 1 cut(s) 72
BstX2I RGATCY 1 cut(s) 217
BstYI RGATCY 1 cut(s) 217
BsuRI GGCC 1 cut(s) 71
BtgZI GCGATG 1 cut(s) 29
BtrI CACGTC 1 cut(s) 161
BtsCI GGATG 3 cut(s) 244, 256, 487
BtsIMutI CAGTG 2 cut(s) 15, 270
CaiI CAGNNNCTG 1 cut(s) 221
CfoI GCGC 1 cut(s) 35
Csp6I GTAC 1 cut(s) 145
CviAII CATG 2 cut(s) 382, 415
CviJI RGCY 6 cut(s) 63, 71, 135, 424, 445, 486
CviKI_1 RGCY 6 cut(s) 63, 71, 135, 424, 445, 486
CviQI GTAC 1 cut(s) 145
DdeI CTNAG 1 cut(s) 288
DpnI GATC 1 cut(s) 219
DpnII GATC 1 cut(s) 217
DraIII CACNNNGTG 1 cut(s) 46
EaeI YGGCCR 1 cut(s) 69
Eam1104I CTCTTC 1 cut(s) 414
EarI CTCTTC 1 cut(s) 414
FaeI CATG 2 cut(s) 385, 418
FaqI GGGAC 2 cut(s) 89, 171
FatI CATG 2 cut(s) 381, 414
FauNDI CATATG 1 cut(s) 460
FblI GTMKAC 1 cut(s) 54
Fnu4HI GCNGC 1 cut(s) 61
FokI GGATG 2 cut(s) 251, 263
Fsp4HI GCNGC 1 cut(s) 61
FspBI CTAG 3 cut(s) 206, 447, 487
GlaI GCGC 1 cut(s) 34
GluI GCNGC 1 cut(s) 61
GsuI CTGGAG 1 cut(s) 446
HaeII RGCGCY 1 cut(s) 36
HaeIII GGCC 1 cut(s) 71
HapII CCGG 1 cut(s) 170
HhaI GCGC 1 cut(s) 35
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 2 cut(s) 385, 418
Hin6I GCGC 1 cut(s) 33
HinP1I GCGC 1 cut(s) 33
HinfI GANTC 5 cut(s) 87, 102, 175, 437, 464
HpaII CCGG 1 cut(s) 170
Hpy166II GTNNAC 2 cut(s) 40, 55
Hpy188I TCNGA 3 cut(s) 30, 264, 289
Hpy188III TCNNGA 3 cut(s) 187, 221, 397
Hpy8I GTNNAC 2 cut(s) 40, 55
Hpy99I CGWCG 1 cut(s) 188
HpyCH4III ACNGT 1 cut(s) 274
HpyCH4IV ACGT 3 cut(s) 45, 78, 160
HpyCH4V TGCA 1 cut(s) 455
HpyF3I CTNAG 1 cut(s) 288
HpySE526I ACGT 3 cut(s) 45, 78, 160
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 2 cut(s) 385, 418
HspAI GCGC 1 cut(s) 33
Kzo9I GATC 1 cut(s) 217
LguI GCTCTTC 1 cut(s) 414
LmnI GCTCC 2 cut(s) 267, 427
LpnPI CCDG 7 cut(s) 77, 183, 234, 393, 410, 447, 464
Lsp1109I GCAGC 1 cut(s) 72
LweI GCATC 2 cut(s) 159, 219
MaeI CTAG 3 cut(s) 206, 447, 487
MaeII ACGT 3 cut(s) 45, 78, 160
MaeIII GTNAC 1 cut(s) 320
MalI GATC 1 cut(s) 219
MboI GATC 1 cut(s) 217
MboII GAAGA 2 cut(s) 398, 431
MflI RGATCY 1 cut(s) 217
MhlI GDGCHC 1 cut(s) 272
MluCI AATT 2 cut(s) 224, 242
MlyI GAGTC 2 cut(s) 96, 111
MnlI CCTC 9 cut(s) 67, 101, 117, 124, 137, 241, 258, 271, 355
MseI TTAA 1 cut(s) 95
MslI CAYNNNNRTG 1 cut(s) 309
MspI CCGG 1 cut(s) 170
NdeI CATATG 1 cut(s) 460
NdeII GATC 1 cut(s) 217
NlaIII CATG 2 cut(s) 385, 418
NmeAIII GCCGAG 1 cut(s) 97
NmuCI GTSAC 1 cut(s) 320
PciSI GCTCTTC 1 cut(s) 414
PfeI GAWTC 3 cut(s) 175, 437, 464
PkrI GCNGC 1 cut(s) 62
PleI GAGTC 2 cut(s) 95, 110
PpsI GAGTC 2 cut(s) 95, 110
PshAI GACNNNNGTC 1 cut(s) 81
PstNI CAGNNNCTG 1 cut(s) 221
PsuI RGATCY 1 cut(s) 217
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
RseI CAYNNNNRTG 1 cut(s) 309
SapI GCTCTTC 1 cut(s) 414
SaqAI TTAA 1 cut(s) 95
SatI GCNGC 1 cut(s) 61
Sau3AI GATC 1 cut(s) 217
SchI GAGTC 2 cut(s) 96, 111
SduI GDGCHC 1 cut(s) 272
SetI ASST 8 cut(s) 48, 81, 146, 163, 201, 366, 426, 436
SfaNI GCATC 2 cut(s) 159, 219
SmiMI CAYNNNNRTG 1 cut(s) 309
Sse9I AATT 2 cut(s) 224, 242
SspMI CTAG 3 cut(s) 206, 447, 487
TaaI ACNGT 1 cut(s) 274
TaiI ACGT 3 cut(s) 48, 81, 163
TaqI TCGA 3 cut(s) 85, 100, 186
TasI AATT 2 cut(s) 224, 242
TfiI GAWTC 3 cut(s) 175, 437, 464
Tru1I TTAA 1 cut(s) 95
Tru9I TTAA 1 cut(s) 95
TscAI CASTG 2 cut(s) 15, 277
TseFI GTSAC 1 cut(s) 320
TseI GCWGC 1 cut(s) 60
Tsp45I GTSAC 1 cut(s) 320
TspDTI ATGAA 4 cut(s) 255, 293, 403, 477
TspRI CASTG 2 cut(s) 15, 277
XapI RAATTY 1 cut(s) 242
XmiI GTMKAC 1 cut(s) 54
XspI CTAG 3 cut(s) 206, 447, 487
ZraI GACGTC 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.