RchiOBHm_Chr6g0305411

AIG2-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0010238
Physical Location & Seq
Forward (+)
64435178 .. 64436957
1780 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27447

Sequence Viewer

Length: 513 bp
ATGAGTTCAGTGGCGATGGCGAACTCTCCGAGCGTCGTCCACAACGTGTTTGTCTACGGCAGCCTGATGGCCGAGGACGTCTGTCGAGTCCTCTTAAATCGAGTCCCTCAATCCTCTAATGCTACCCTCAATGGCTATCATAGGTACAGCATCAAGGGACGTGTTTATCCGGCGATTCTCCCCGTCGAGAATAAAAAAGTTACCGGAAAGGTGTTGTTAGGCATCACAGATCCTGAATTACATATTTTGGATGAATTTGAGGATGTTGAGTATCAGAGGGGCACTGTTGAGGTCTCTTTGATGGATAGTTCTGAGAACTTGCGAGTTCATACTTATGTTTGGAGTGACAAAAATGACCCAAACTTGTATGGAGAATGGGATTTTGAGGTATGGAAACAAAGGCACATGGAAGATTTTATCAAGATGACTTCTGGTTTCATGGAAGAGCTGGAGCAACCTGAATCAAAGCCTAGAGTTGCAACGTATGAATCCTTTTATCAGCAGGATGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GGACT

Protein Analysis

170

Amino Acids

19.57

Weight (kDa)

4.91

Isoelectric Point (pI)

48.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GGACT PF06094 16 - 127 1.7e-25 Gamma-glutamyl cyclotransferase, AIG2-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 81
AccI GTMKAC 1 cut(s) 54
AclWI GGATC 1 cut(s) 224
AcoI YGGCCR 1 cut(s) 69
AcsI RAATTY 1 cut(s) 254
AcyI GRCGYC 1 cut(s) 78
AdeI CACNNNGTG 1 cut(s) 46
AfaI GTAC 1 cut(s) 146
AflIII ACRYGT 2 cut(s) 45, 160
AjiI CACGTC 1 cut(s) 161
AluBI AGCT 1 cut(s) 448
AluI AGCT 1 cut(s) 448
Alw26I GTCTC 1 cut(s) 298
AlwI GGATC 1 cut(s) 224
AlwNI CAGNNNCTG 1 cut(s) 233
AoxI GGCC 1 cut(s) 69
ApeKI GCWGC 1 cut(s) 60
ApoI RAATTY 1 cut(s) 254
BaeGI GKGCMC 1 cut(s) 284
BbvI GCAGC 1 cut(s) 72
BccI CCATC 4 cut(s) 10, 61, 295, 500
BceAI ACGGC 1 cut(s) 73
BcoDI GTCTC 1 cut(s) 298
BfaI CTAG 2 cut(s) 471, 511
BisI GCNGC 1 cut(s) 61
BlsI GCNGC 1 cut(s) 62
BmgBI CACGTC 1 cut(s) 161
BmsI GCATC 2 cut(s) 159, 231
BoxI GACNNNNGTC 1 cut(s) 81
BpmI CTGGAG 1 cut(s) 470
BsaHI GRCGYC 1 cut(s) 78
BsaI GGTCTC 1 cut(s) 298
BsaJI CCNNGG 1 cut(s) 72
BsaWI WCCGGW 1 cut(s) 203
BseDI CCNNGG 1 cut(s) 72
BseGI GGATG 3 cut(s) 256, 268, 511
BseMII CTCAG 1 cut(s) 303
BseSI GKGCMC 1 cut(s) 284
BseXI GCAGC 1 cut(s) 72
BshFI GGCC 1 cut(s) 71
BsiSI CCGG 2 cut(s) 170, 204
BslFI GGGAC 2 cut(s) 89, 171
BsmAI GTCTC 1 cut(s) 298
BsmFI GGGAC 2 cut(s) 89, 171
BsnI GGCC 1 cut(s) 71
Bso31I GGTCTC 1 cut(s) 298
Bsp1286I GDGCHC 1 cut(s) 284
Bsp143I GATC 1 cut(s) 229
BspANI GGCC 1 cut(s) 71
BspCNI CTCAG 1 cut(s) 304
BspPI GGATC 1 cut(s) 224
BspQI GCTCTTC 1 cut(s) 438
BspTNI GGTCTC 1 cut(s) 298
BssECI CCNNGG 1 cut(s) 72
BssMI GATC 1 cut(s) 229
BssNI GRCGYC 1 cut(s) 78
Bst4CI ACNGT 1 cut(s) 286
Bst6I CTCTTC 1 cut(s) 438
BstACI GRCGYC 1 cut(s) 78
BstDEI CTNAG 1 cut(s) 312
BstF5I GGATG 3 cut(s) 256, 268, 511
BstKTI GATC 1 cut(s) 232
BstMAI GTCTC 1 cut(s) 298
BstMBI GATC 1 cut(s) 229
BstPAI GACNNNNGTC 1 cut(s) 81
BstSLI GKGCMC 1 cut(s) 284
BstV1I GCAGC 1 cut(s) 72
BstX2I RGATCY 1 cut(s) 229
BstYI RGATCY 1 cut(s) 229
BsuRI GGCC 1 cut(s) 71
BtgZI GCGATG 1 cut(s) 29
BtrI CACGTC 1 cut(s) 161
BtsCI GGATG 3 cut(s) 256, 268, 511
BtsIMutI CAGTG 2 cut(s) 15, 282
CaiI CAGNNNCTG 1 cut(s) 233
CseI GACGC 1 cut(s) 22
Csp6I GTAC 1 cut(s) 145
CviAII CATG 2 cut(s) 406, 439
CviJI RGCY 6 cut(s) 63, 71, 135, 448, 469, 510
CviKI_1 RGCY 6 cut(s) 63, 71, 135, 448, 469, 510
CviQI GTAC 1 cut(s) 145
DdeI CTNAG 1 cut(s) 312
DpnI GATC 1 cut(s) 231
DpnII GATC 1 cut(s) 229
DraIII CACNNNGTG 1 cut(s) 46
EaeI YGGCCR 1 cut(s) 69
Eam1104I CTCTTC 1 cut(s) 438
EarI CTCTTC 1 cut(s) 438
Eco31I GGTCTC 1 cut(s) 298
FaeI CATG 2 cut(s) 409, 442
FaiI YATR 9 cut(s) 141, 243, 330, 336, 369, 391, 407, 440, 486
FaqI GGGAC 2 cut(s) 89, 171
FatI CATG 2 cut(s) 405, 438
FblI GTMKAC 1 cut(s) 54
Fnu4HI GCNGC 1 cut(s) 61
FokI GGATG 2 cut(s) 263, 275
Fsp4HI GCNGC 1 cut(s) 61
FspBI CTAG 2 cut(s) 471, 511
GluI GCNGC 1 cut(s) 61
GsuI CTGGAG 1 cut(s) 470
HaeIII GGCC 1 cut(s) 71
HapII CCGG 2 cut(s) 170, 204
HgaI GACGC 1 cut(s) 22
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 2 cut(s) 409, 442
HinfI GANTC 5 cut(s) 87, 102, 175, 461, 488
HpaII CCGG 2 cut(s) 170, 204
Hpy166II GTNNAC 2 cut(s) 40, 55
Hpy188I TCNGA 3 cut(s) 30, 276, 313
Hpy188III TCNNGA 3 cut(s) 187, 233, 421
Hpy8I GTNNAC 2 cut(s) 40, 55
Hpy99I CGWCG 2 cut(s) 38, 188
HpyCH4III ACNGT 1 cut(s) 286
HpyCH4IV ACGT 4 cut(s) 45, 78, 160, 482
HpyCH4V TGCA 1 cut(s) 479
HpyF3I CTNAG 1 cut(s) 312
HpySE526I ACGT 4 cut(s) 45, 78, 160, 482
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 2 cut(s) 409, 442
Kzo9I GATC 1 cut(s) 229
LguI GCTCTTC 1 cut(s) 438
LmnI GCTCC 1 cut(s) 451
LpnPI CCDG 8 cut(s) 77, 183, 217, 246, 417, 434, 471, 488
Lsp1109I GCAGC 1 cut(s) 72
LweI GCATC 2 cut(s) 159, 231
MaeI CTAG 2 cut(s) 471, 511
MaeII ACGT 4 cut(s) 45, 78, 160, 482
MaeIII GTNAC 2 cut(s) 199, 344
MalI GATC 1 cut(s) 231
MboI GATC 1 cut(s) 229
MboII GAAGA 2 cut(s) 422, 455
MflI RGATCY 1 cut(s) 229
MhlI GDGCHC 1 cut(s) 284
MluCI AATT 2 cut(s) 236, 254
MlyI GAGTC 2 cut(s) 96, 111
MnlI CCTC 9 cut(s) 67, 101, 117, 124, 137, 253, 270, 283, 379
MseI TTAA 1 cut(s) 95
MslI CAYNNNNRTG 1 cut(s) 333
MspI CCGG 2 cut(s) 170, 204
NdeII GATC 1 cut(s) 229
NlaIII CATG 2 cut(s) 409, 442
NmeAIII GCCGAG 1 cut(s) 97
NmuCI GTSAC 1 cut(s) 344
PciSI GCTCTTC 1 cut(s) 438
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PfeI GAWTC 3 cut(s) 175, 461, 488
PkrI GCNGC 1 cut(s) 62
PleI GAGTC 2 cut(s) 95, 110
PpsI GAGTC 2 cut(s) 95, 110
PshAI GACNNNNGTC 1 cut(s) 81
PstNI CAGNNNCTG 1 cut(s) 233
PsuI RGATCY 1 cut(s) 229
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
RseI CAYNNNNRTG 1 cut(s) 333
SapI GCTCTTC 1 cut(s) 438
SaqAI TTAA 1 cut(s) 95
SatI GCNGC 1 cut(s) 61
Sau3AI GATC 1 cut(s) 229
SchI GAGTC 2 cut(s) 96, 111
SduI GDGCHC 1 cut(s) 284
SfaNI GCATC 2 cut(s) 159, 231
SmiMI CAYNNNNRTG 1 cut(s) 333
Sse9I AATT 2 cut(s) 236, 254
SspMI CTAG 2 cut(s) 471, 511
TaaI ACNGT 1 cut(s) 286
TaiI ACGT 4 cut(s) 48, 81, 163, 485
TaqI TCGA 3 cut(s) 85, 100, 186
TasI AATT 2 cut(s) 236, 254
TfiI GAWTC 3 cut(s) 175, 461, 488
Tru1I TTAA 1 cut(s) 95
Tru9I TTAA 1 cut(s) 95
TscAI CASTG 2 cut(s) 15, 289
TseFI GTSAC 1 cut(s) 344
TseI GCWGC 1 cut(s) 60
Tsp45I GTSAC 1 cut(s) 344
TspDTI ATGAA 4 cut(s) 267, 317, 427, 501
TspRI CASTG 2 cut(s) 15, 289
XapI RAATTY 1 cut(s) 254
XmiI GTMKAC 1 cut(s) 54
XspI CTAG 2 cut(s) 471, 511
ZraI GACGTC 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.