Rw6G039390

AIG2-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0010238
Physical Location & Seq
Forward (+)
63403616 .. 63405519
1904 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G039390.1

Sequence Viewer

Length: 597 bp
ATGAATTCGATGTCGTATGCCGTATGCATGAAATATAAATTTGACCACTCCTTTGAGTTTCTTCTTCTTAGTCATCAGAAAGAGATGAGTTCAGTGGCGATGGCGAACTCTCCGAGCGTCGTCCACAACGTGTTTGTCTACGGCAGCCTGATGGCCGAGGACGTCTGTCGAGTCCTCTTAAATCGAGTCCCTCAATCCTCTAATGCTACCCTCAATGGCTATCATAGGTACAGCATCAAAGGACGTGTTTATCCGGCGATTCTCCCCGTCGAGAATAAAAAAGTTACCGGAAAGGTGTTGTTAGGCATCACAGATCCTGAATTACATATTTTGGATGAATTTGAGGATGTTGAGTATCAGAGGGGCACCGTTGAGGTCTCTTTGATGGATAGTTCTGAGAACTTGCGAGTTCATACTTATGTTTGGAGTGACAAAAATGACCCAAACTTGTATGGAGAATGGGATTTTGAGGTATGGAAACAAAGGCACATGGAAGATTTTATCAAGATGACTTCTGGTTTCATGGAAGAGCTGGAGCAACCTGAATCAAAGCCTAGAGTTGCAACGTATGAATCCTTTTATCAGCAGGATGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GGACT

Protein Analysis

198

Amino Acids

22.97

Weight (kDa)

5.14

Isoelectric Point (pI)

48.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GGACT PF06094 44 - 155 2.6e-25 Gamma-glutamyl cyclotransferase, AIG2-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 165
AccB1I GGYRCC 1 cut(s) 365
AccI GTMKAC 1 cut(s) 138
AclWI GGATC 1 cut(s) 308
AcoI YGGCCR 1 cut(s) 153
AcsI RAATTY 3 cut(s) 4, 38, 338
AcyI GRCGYC 1 cut(s) 162
AdeI CACNNNGTG 1 cut(s) 130
AfaI GTAC 1 cut(s) 230
AflIII ACRYGT 2 cut(s) 129, 244
AjiI CACGTC 1 cut(s) 245
AluBI AGCT 1 cut(s) 532
AluI AGCT 1 cut(s) 532
Alw26I GTCTC 1 cut(s) 382
AlwI GGATC 1 cut(s) 308
AlwNI CAGNNNCTG 1 cut(s) 317
AoxI GGCC 1 cut(s) 153
ApeKI GCWGC 1 cut(s) 144
ApoI RAATTY 3 cut(s) 4, 38, 338
ArsI GACNNNNNNTTYG 2 cut(s) 35, 67
BaeGI GKGCMC 1 cut(s) 368
BanI GGYRCC 1 cut(s) 365
BbvI GCAGC 1 cut(s) 156
BccI CCATC 4 cut(s) 94, 145, 379, 584
BceAI ACGGC 2 cut(s) 5, 157
BcoDI GTCTC 1 cut(s) 382
BfaI CTAG 2 cut(s) 555, 595
BisI GCNGC 1 cut(s) 145
BlsI GCNGC 1 cut(s) 146
BmgBI CACGTC 1 cut(s) 245
BmiI GGNNCC 1 cut(s) 367
BmsI GCATC 2 cut(s) 243, 315
BoxI GACNNNNGTC 1 cut(s) 165
BpmI CTGGAG 1 cut(s) 554
BsaHI GRCGYC 1 cut(s) 162
BsaI GGTCTC 1 cut(s) 382
BsaJI CCNNGG 1 cut(s) 156
BsaWI WCCGGW 1 cut(s) 287
BseDI CCNNGG 1 cut(s) 156
BseGI GGATG 3 cut(s) 340, 352, 595
BseMII CTCAG 1 cut(s) 387
BseSI GKGCMC 1 cut(s) 368
BseXI GCAGC 1 cut(s) 156
BshFI GGCC 1 cut(s) 155
BshNI GGYRCC 1 cut(s) 365
BsiSI CCGG 2 cut(s) 254, 288
BslFI GGGAC 1 cut(s) 173
BsmAI GTCTC 1 cut(s) 382
BsmFI GGGAC 1 cut(s) 173
BsnI GGCC 1 cut(s) 155
Bso31I GGTCTC 1 cut(s) 382
Bsp1286I GDGCHC 1 cut(s) 368
Bsp143I GATC 1 cut(s) 313
BspANI GGCC 1 cut(s) 155
BspCNI CTCAG 1 cut(s) 388
BspLI GGNNCC 1 cut(s) 367
BspPI GGATC 1 cut(s) 308
BspQI GCTCTTC 1 cut(s) 522
BspT107I GGYRCC 1 cut(s) 365
BspTNI GGTCTC 1 cut(s) 382
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 1 cut(s) 313
BssNI GRCGYC 1 cut(s) 162
Bst4CI ACNGT 1 cut(s) 370
Bst6I CTCTTC 1 cut(s) 522
BstACI GRCGYC 1 cut(s) 162
BstDEI CTNAG 2 cut(s) 68, 396
BstF5I GGATG 3 cut(s) 340, 352, 595
BstKTI GATC 1 cut(s) 316
BstMAI GTCTC 1 cut(s) 382
BstMBI GATC 1 cut(s) 313
BstPAI GACNNNNGTC 1 cut(s) 165
BstSLI GKGCMC 1 cut(s) 368
BstV1I GCAGC 1 cut(s) 156
BstX2I RGATCY 1 cut(s) 313
BstYI RGATCY 1 cut(s) 313
BsuRI GGCC 1 cut(s) 155
BtgZI GCGATG 1 cut(s) 113
BtrI CACGTC 1 cut(s) 245
BtsCI GGATG 3 cut(s) 340, 352, 595
BtsIMutI CAGTG 1 cut(s) 99
CaiI CAGNNNCTG 1 cut(s) 317
CseI GACGC 1 cut(s) 106
Csp6I GTAC 1 cut(s) 229
CviAII CATG 3 cut(s) 28, 490, 523
CviJI RGCY 6 cut(s) 147, 155, 219, 532, 553, 594
CviKI_1 RGCY 6 cut(s) 147, 155, 219, 532, 553, 594
CviQI GTAC 1 cut(s) 229
DdeI CTNAG 2 cut(s) 68, 396
DpnI GATC 1 cut(s) 315
DpnII GATC 1 cut(s) 313
DraIII CACNNNGTG 1 cut(s) 130
EaeI YGGCCR 1 cut(s) 153
Eam1104I CTCTTC 1 cut(s) 522
EarI CTCTTC 1 cut(s) 522
Eco31I GGTCTC 1 cut(s) 382
EcoRI GAATTC 1 cut(s) 4
EcoT22I ATGCAT 1 cut(s) 29
FaeI CATG 3 cut(s) 31, 493, 526
FaqI GGGAC 1 cut(s) 173
FatI CATG 3 cut(s) 27, 489, 522
FblI GTMKAC 1 cut(s) 138
Fnu4HI GCNGC 1 cut(s) 145
FokI GGATG 2 cut(s) 347, 359
Fsp4HI GCNGC 1 cut(s) 145
FspBI CTAG 2 cut(s) 555, 595
GluI GCNGC 1 cut(s) 145
GsuI CTGGAG 1 cut(s) 554
HaeIII GGCC 1 cut(s) 155
HapII CCGG 2 cut(s) 254, 288
HgaI GACGC 1 cut(s) 106
Hin1I GRCGYC 1 cut(s) 162
Hin1II CATG 3 cut(s) 31, 493, 526
HinfI GANTC 5 cut(s) 171, 186, 259, 545, 572
HpaII CCGG 2 cut(s) 254, 288
Hpy166II GTNNAC 2 cut(s) 124, 139
Hpy188I TCNGA 4 cut(s) 78, 114, 360, 397
Hpy188III TCNNGA 3 cut(s) 271, 317, 505
Hpy8I GTNNAC 2 cut(s) 124, 139
Hpy99I CGWCG 2 cut(s) 122, 272
HpyCH4III ACNGT 1 cut(s) 370
HpyCH4IV ACGT 4 cut(s) 129, 162, 244, 566
HpyCH4V TGCA 2 cut(s) 27, 563
HpyF3I CTNAG 2 cut(s) 68, 396
HpySE526I ACGT 4 cut(s) 129, 162, 244, 566
Hsp92I GRCGYC 1 cut(s) 162
Hsp92II CATG 3 cut(s) 31, 493, 526
Kzo9I GATC 1 cut(s) 313
LguI GCTCTTC 1 cut(s) 522
LmnI GCTCC 1 cut(s) 535
LpnPI CCDG 8 cut(s) 161, 267, 301, 330, 501, 518, 555, 572
Lsp1109I GCAGC 1 cut(s) 156
LweI GCATC 2 cut(s) 243, 315
MaeI CTAG 2 cut(s) 555, 595
MaeII ACGT 4 cut(s) 129, 162, 244, 566
MaeIII GTNAC 2 cut(s) 283, 428
MalI GATC 1 cut(s) 315
MboI GATC 1 cut(s) 313
MboII GAAGA 4 cut(s) 53, 56, 506, 539
MflI RGATCY 1 cut(s) 313
MhlI GDGCHC 1 cut(s) 368
MluCI AATT 4 cut(s) 4, 38, 320, 338
MlyI GAGTC 2 cut(s) 180, 195
MnlI CCTC 9 cut(s) 151, 185, 201, 208, 221, 337, 354, 367, 463
Mph1103I ATGCAT 1 cut(s) 29
MseI TTAA 1 cut(s) 179
MslI CAYNNNNRTG 1 cut(s) 417
MspI CCGG 2 cut(s) 254, 288
NdeII GATC 1 cut(s) 313
NlaIII CATG 3 cut(s) 31, 493, 526
NlaIV GGNNCC 1 cut(s) 367
NmeAIII GCCGAG 1 cut(s) 181
NmuCI GTSAC 1 cut(s) 428
NsiI ATGCAT 1 cut(s) 29
PciSI GCTCTTC 1 cut(s) 522
PcsI WCGNNNNNNNCGW 1 cut(s) 126
PfeI GAWTC 3 cut(s) 259, 545, 572
PkrI GCNGC 1 cut(s) 146
PleI GAGTC 2 cut(s) 179, 194
PpsI GAGTC 2 cut(s) 179, 194
PshAI GACNNNNGTC 1 cut(s) 165
PspN4I GGNNCC 1 cut(s) 367
PstNI CAGNNNCTG 1 cut(s) 317
PsuI RGATCY 1 cut(s) 313
RsaI GTAC 1 cut(s) 230
RsaNI GTAC 1 cut(s) 229
RseI CAYNNNNRTG 1 cut(s) 417
SapI GCTCTTC 1 cut(s) 522
SaqAI TTAA 1 cut(s) 179
SatI GCNGC 1 cut(s) 145
Sau3AI GATC 1 cut(s) 313
SchI GAGTC 2 cut(s) 180, 195
SduI GDGCHC 1 cut(s) 368
SfaNI GCATC 2 cut(s) 243, 315
SmiMI CAYNNNNRTG 1 cut(s) 417
Sse9I AATT 4 cut(s) 4, 38, 320, 338
SspMI CTAG 2 cut(s) 555, 595
TaaI ACNGT 1 cut(s) 370
TaiI ACGT 4 cut(s) 132, 165, 247, 569
TaqI TCGA 4 cut(s) 8, 169, 184, 270
TasI AATT 4 cut(s) 4, 38, 320, 338
TfiI GAWTC 3 cut(s) 259, 545, 572
Tru1I TTAA 1 cut(s) 179
Tru9I TTAA 1 cut(s) 179
TscAI CASTG 1 cut(s) 99
TseFI GTSAC 1 cut(s) 428
TseI GCWGC 1 cut(s) 144
Tsp45I GTSAC 1 cut(s) 428
TspDTI ATGAA 6 cut(s) 17, 44, 351, 401, 511, 585
TspRI CASTG 1 cut(s) 99
XapI RAATTY 3 cut(s) 4, 38, 338
XmiI GTMKAC 1 cut(s) 138
XspI CTAG 2 cut(s) 555, 595
ZraI GACGTC 1 cut(s) 163
Zsp2I ATGCAT 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.