Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003666

Physical Location & Seq

Genomic Coordinates Forward (+)

49115318 .. 49116634

Gene Structure 1317 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0340100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGTTCGGGGTTGGATTAAGAAAACATGTTACCTTTACAAGAGCTTTGGTTTCTCCAAGCTGCTTCAAGATGGGGTATTCATCCCAGAGTGGAAGACTTGAAGGAAAGGTGGCACTGATTACAGGAGCAGCAAGTGGTATAGGAAAGGCAACTGCATCAAAATTCATCAGCAATGGTGCCAAGGTTGTTCTTGCAGATATCCAACACCAGCTTGGCCAAGATGCAGCAAAGGAGCTTGGTCCTAATGCCAGCTTCATTGCCTGTGATGTCACAAAAGAATCCGACATTTCCAATGCTGTAGATTTCACCATCTCTAAGCACAGCCAGCTTGATATTATGCACAGCAATGCAGGTGTAGCTTGTAAATCTCCTCCAAGCATTGTGGACCTTGACCTGGCAGTGTTTGATCGTGTCATGAACATCAACGTGCGAGGAGTCCTGGCAGGAATTAAGCACGCTTCACGTGTGATGATCCCGCGCAAAACTGGCTCAATTCTCTGCACAGCCAGCGTCACAGGACTAATGGGAGGACTAGCACAGCACACCTATTCTCTGTCCAAGTTTGCTGTAATAGGCATTGTCAAGTCTCTGGCTGCAGAGCTACGCCAGCATGGGATCCGGGTCAATTGCATATCCCCATTTGCCATTCCAACCCCATTTGTAATCGAAGAAATGAGTCAGATTTATCCAGGAGCTGATGAAGAGAAGTTAATTGAAATTATACATCGCTCTGGGGCCTTAGAAGGAGCAAACTGTGAACCCAATGACATTGCCAATGCTGCACTTTACCTAGCTTCAGCTGATGCTAAATATGTTAGTGGCCATAATTTGGTTGTAGATGGAGGTTTTACATCTTTCAAGACTTTTAGTTTCCCTGCACCAGATCAGGTGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005839 GO:0019774 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome

Protein Analysis

298

Amino Acids

31.45

Weight (kDa)

8.18

Isoelectric Point (pI)

37.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	36 - 223	4.1e-50	short chain dehydrogenase
KR	PF08659	38 - 211	4.8e-09	KR domain
adh_short_C2	PF13561	42 - 284	2.2e-59	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31300 AT4G31300 AT4G31300
fragaria_vesca	FvH4_2g36480
malus_domestica	MD08G1124600.v1.1 MD13G1234400.v1.1 MD15G1103300.v1.1 MD16G1239000.v1.1
prunus_persica	Prupe.1G065200_v2.0.a1 Prupe.1G456200_v2.0.a1 Prupe.1G456200_v2.0.a1
pyrus_communis	pycom08g10330 pycom13g20630 pycom16g19990
rosa_chinensis	RchiOBHm_Chr2g0148551 RchiOBHm_Chr6g0305401
rosa_laevigata	RLG00000008279 RLG00000010894 RLG00000027046
rosa_multiflora	Rmu_sc0002782.1_g000018 Rmu_sc0012564.1_g000002
rosa_roxburghii	Rroxscaffold_1G00015230 Rroxscaffold_7G00162840
rosa_rugosa	Rorug06G0340100
rosa_samantha	Rh2CG224200 Rh3AG033400 Rh3BG033700 Rh3DG033400 Rh5CG280300 Rh5CG513800 Rh6AG452000 Rh6BG449700 Rh6CG465900 Rh6DG452600
rosa_wichuraiana	Rw6G039380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	341
Acc36I	ACCTGC	1 cut(s)	341
AccB1I	GGYRCC	1 cut(s)	176
AccB7I	CCANNNNNTGG	1 cut(s)	829
AccII	CGCG	1 cut(s)	478
AciI	CCGC	1 cut(s)	476
AclWI	GGATC	3 cut(s)	466, 610, 623
AcoI	YGGCCR	2 cut(s)	214, 820
AcsI	RAATTY	1 cut(s)	161
AcuI	CTGAAG	1 cut(s)	780
AcvI	CACGTG	1 cut(s)	464
AfiI	CCNNNNNNNGG	2 cut(s)	394, 829
AflIII	ACRYGT	2 cut(s)	25, 463
AgsI	TTSAA	4 cut(s)	67, 101, 716, 859
AjnI	CCWGG	3 cut(s)	393, 438, 688
Alw26I	GTCTC	1 cut(s)	591
AlwI	GGATC	3 cut(s)	466, 610, 623
AlwNI	CAGNNNCTG	1 cut(s)	695
AoxI	GGCC	3 cut(s)	214, 735, 820
ApeKI	GCWGC	5 cut(s)	60, 128, 224, 593, 779
ApoI	RAATTY	1 cut(s)	161
AspLEI	GCGC	1 cut(s)	480
AspS9I	GGNCC	3 cut(s)	239, 385, 735
AsuC2I	CCSGG	1 cut(s)	620
AsuHPI	GGTGA	1 cut(s)	298
AvaII	GGWCC	2 cut(s)	239, 385
BalI	TGGCCA	2 cut(s)	216, 822
BamHI	GGATCC	1 cut(s)	615
BanI	GGYRCC	1 cut(s)	176
BbrPI	CACGTG	1 cut(s)	464
BbsI	GAAGAC	1 cut(s)	100
BbvI	GCAGC	5 cut(s)	47, 140, 236, 580, 766
BccI	CCATC	3 cut(s)	64, 317, 833
BciT130I	CCWGG	3 cut(s)	395, 440, 690
BcnI	CCSGG	1 cut(s)	620
BcoDI	GTCTC	1 cut(s)	591
BfaI	CTAG	2 cut(s)	533, 791
BfmI	CTRYAG	2 cut(s)	297, 594
BfuAI	ACCTGC	1 cut(s)	341
BisI	GCNGC	5 cut(s)	61, 129, 225, 594, 780
BlsI	GCNGC	5 cut(s)	62, 130, 226, 595, 781
Bme1390I	CCNGG	4 cut(s)	395, 440, 620, 690
Bme18I	GGWCC	2 cut(s)	239, 385
BmgT120I	GGNCC	3 cut(s)	239, 385, 735
BmiI	GGNNCC	3 cut(s)	178, 617, 736
BmrFI	CCNGG	4 cut(s)	395, 440, 620, 690
BmsI	GCATC	3 cut(s)	164, 211, 793
BpiI	GAAGAC	1 cut(s)	100
BpuMI	CCSGG	1 cut(s)	620
BsaAI	YACGTR	1 cut(s)	464
BsaJI	CCNNGG	1 cut(s)	180
Bsc4I	CCNNNNNNNGG	2 cut(s)	394, 829
Bse1I	ACTGG	1 cut(s)	490
Bse3DI	GCAATG	4 cut(s)	178, 255, 352, 768
BseBI	CCWGG	3 cut(s)	395, 440, 690
BseDI	CCNNGG	1 cut(s)	180
BseGI	GGATG	1 cut(s)	80
BseLI	CCNNNNNNNGG	2 cut(s)	394, 829
BseMI	GCAATG	4 cut(s)	178, 255, 352, 768
BseNI	ACTGG	1 cut(s)	490
BseRI	GAGGAG	2 cut(s)	360, 447
BseXI	GCAGC	5 cut(s)	47, 140, 236, 580, 766
BsgI	GTGCAG	3 cut(s)	484, 765, 861
Bsh1236I	CGCG	1 cut(s)	478
BshFI	GGCC	3 cut(s)	216, 737, 822
BshNI	GGYRCC	1 cut(s)	176
BsiSI	CCGG	1 cut(s)	619
BslI	CCNNNNNNNGG	2 cut(s)	394, 829
BsmAI	GTCTC	1 cut(s)	591
BsnI	GGCC	3 cut(s)	216, 737, 822
Bsp143I	GATC	4 cut(s)	406, 471, 615, 883
BspACI	CCGC	1 cut(s)	476
BspANI	GGCC	3 cut(s)	216, 737, 822
BspFNI	CGCG	1 cut(s)	478
BspHI	TCATGA	1 cut(s)	414
BspLI	GGNNCC	3 cut(s)	178, 617, 736
BspMAI	CTGCAG	1 cut(s)	598
BspMI	ACCTGC	1 cut(s)	341
BspPI	GGATC	3 cut(s)	466, 610, 623
BspT107I	GGYRCC	1 cut(s)	176
BsrDI	GCAATG	4 cut(s)	178, 255, 352, 768
BsrI	ACTGG	1 cut(s)	490
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	4 cut(s)	406, 471, 615, 883
BssT1I	CCWWGG	1 cut(s)	180
Bst2UI	CCWGG	3 cut(s)	395, 440, 690
Bst4CI	ACNGT	1 cut(s)	755
Bst6I	CTCTTC	1 cut(s)	696
BstBAI	YACGTR	1 cut(s)	464
BstC8I	GCNNGC	5 cut(s)	250, 326, 456, 508, 608
BstDEI	CTNAG	2 cut(s)	315, 739
BstF5I	GGATG	1 cut(s)	80
BstFNI	CGCG	1 cut(s)	478
BstHHI	GCGC	1 cut(s)	480
BstKTI	GATC	4 cut(s)	409, 474, 618, 886
BstMAI	GTCTC	1 cut(s)	591
BstMBI	GATC	4 cut(s)	406, 471, 615, 883
BstMWI	GCNNNNNNNGC	6 cut(s)	325, 356, 486, 507, 607, 779
BstNI	CCWGG	3 cut(s)	395, 440, 690
BstNSI	RCATGY	1 cut(s)	29
BstSCI	CCNGG	4 cut(s)	393, 438, 618, 688
BstSFI	CTRYAG	2 cut(s)	297, 594
BstUI	CGCG	1 cut(s)	478
BstV1I	GCAGC	5 cut(s)	47, 140, 236, 580, 766
BstV2I	GAAGAC	1 cut(s)	100
BstX2I	RGATCY	1 cut(s)	615
BstYI	RGATCY	1 cut(s)	615
BsuRI	GGCC	3 cut(s)	216, 737, 822
BtgZI	GCGATG	1 cut(s)	710
BtsCI	GGATG	1 cut(s)	80
BtsI	GCAGTG	1 cut(s)	405
BtsIMutI	CAGTG	2 cut(s)	113, 405
BveI	ACCTGC	1 cut(s)	341
Cac8I	GCNNGC	5 cut(s)	250, 326, 456, 508, 608
CaiI	CAGNNNCTG	1 cut(s)	695
CciI	TCATGA	1 cut(s)	414
CfoI	GCGC	1 cut(s)	480
Cfr13I	GGNCC	3 cut(s)	239, 385, 735
CseI	GACGC	1 cut(s)	499
CspCI	CAANNNNNGTGG	2 cut(s)	363, 398
CviAII	CATG	3 cut(s)	26, 415, 611
DdeI	CTNAG	2 cut(s)	315, 739
DpnI	GATC	4 cut(s)	408, 473, 617, 885
DpnII	GATC	4 cut(s)	406, 471, 615, 883
EaeI	YGGCCR	2 cut(s)	214, 820
Eam1104I	CTCTTC	1 cut(s)	696
EarI	CTCTTC	1 cut(s)	696
Eco130I	CCWWGG	1 cut(s)	180
Eco32I	GATATC	1 cut(s)	199
Eco47I	GGWCC	2 cut(s)	239, 385
Eco57I	CTGAAG	1 cut(s)	780
Eco72I	CACGTG	1 cut(s)	464
EcoO109I	RGGNCCY	1 cut(s)	735
EcoRII	CCWGG	3 cut(s)	393, 438, 688
EcoRV	GATATC	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	180
FaeI	CATG	3 cut(s)	29, 418, 614
FaiI	YATR	9 cut(s)	27, 140, 338, 416, 612, 632, 722, 813, 825
FatI	CATG	3 cut(s)	25, 414, 610
FauI	CCCGC	1 cut(s)	483
Fnu4HI	GCNGC	5 cut(s)	61, 129, 225, 594, 780
FokI	GGATG	1 cut(s)	67
Fsp4HI	GCNGC	5 cut(s)	61, 129, 225, 594, 780
FspBI	CTAG	2 cut(s)	533, 791
GlaI	GCGC	1 cut(s)	479
GluI	GCNGC	5 cut(s)	61, 129, 225, 594, 780
HaeIII	GGCC	3 cut(s)	216, 737, 822
HapII	CCGG	1 cut(s)	619
HgaI	GACGC	1 cut(s)	499
HhaI	GCGC	1 cut(s)	480
Hin1II	CATG	3 cut(s)	29, 418, 614
Hin6I	GCGC	1 cut(s)	478
HinP1I	GCGC	1 cut(s)	478
HinfI	GANTC	3 cut(s)	278, 435, 676
HpaII	CCGG	1 cut(s)	619
HphI	GGTGA	1 cut(s)	298
Hpy166II	GTNNAC	2 cut(s)	385, 758
Hpy188I	TCNGA	2 cut(s)	283, 681
Hpy188III	TCNNGA	3 cut(s)	67, 415, 859
Hpy8I	GTNNAC	2 cut(s)	385, 758
HpyAV	CCTTC	2 cut(s)	95, 737
HpyCH4III	ACNGT	1 cut(s)	755
HpyCH4IV	ACGT	2 cut(s)	426, 463
HpyF10VI	GCNNNNNNNGC	6 cut(s)	325, 356, 486, 507, 607, 779
HpyF3I	CTNAG	2 cut(s)	315, 739
HpySE526I	ACGT	2 cut(s)	426, 463
Hsp92II	CATG	3 cut(s)	29, 418, 614
HspAI	GCGC	1 cut(s)	478
Kzo9I	GATC	4 cut(s)	406, 471, 615, 883
LmnI	GCTCC	4 cut(s)	125, 232, 692, 746
Lsp1109I	GCAGC	5 cut(s)	47, 140, 236, 580, 766
LweI	GCATC	3 cut(s)	164, 211, 793
MaeI	CTAG	2 cut(s)	533, 791
MaeII	ACGT	2 cut(s)	426, 463
MaeIII	GTNAC	3 cut(s)	28, 268, 511
MalI	GATC	4 cut(s)	408, 473, 617, 885
MboI	GATC	4 cut(s)	406, 471, 615, 883
MboII	GAAGA	3 cut(s)	105, 680, 713
MfeI	CAATTG	1 cut(s)	625
MflI	RGATCY	1 cut(s)	615
MlsI	TGGCCA	2 cut(s)	216, 822
MluCI	AATT	7 cut(s)	161, 447, 492, 625, 711, 717, 826
MluNI	TGGCCA	2 cut(s)	216, 822
MlyI	GAGTC	2 cut(s)	444, 685
MmeI	TCCRAC	3 cut(s)	226, 306, 674
MnlI	CCTC	4 cut(s)	381, 425, 521, 836
Mox20I	TGGCCA	2 cut(s)	216, 822
MscI	TGGCCA	2 cut(s)	216, 822
MseI	TTAA	4 cut(s)	17, 450, 710, 895
MslI	CAYNNNNRTG	2 cut(s)	345, 425
Msp20I	TGGCCA	2 cut(s)	216, 822
MspA1I	CMGCKG	1 cut(s)	800
MspI	CCGG	1 cut(s)	619
MspR9I	CCNGG	4 cut(s)	395, 440, 620, 690
MunI	CAATTG	1 cut(s)	625
MvaI	CCWGG	3 cut(s)	395, 440, 690
MvnI	CGCG	1 cut(s)	478
MwoI	GCNNNNNNNGC	6 cut(s)	325, 356, 486, 507, 607, 779
NciI	CCSGG	1 cut(s)	620
NdeII	GATC	4 cut(s)	406, 471, 615, 883
NlaIII	CATG	3 cut(s)	29, 418, 614
NlaIV	GGNNCC	3 cut(s)	178, 617, 736
NmuCI	GTSAC	2 cut(s)	268, 511
NspI	RCATGY	1 cut(s)	29
PagI	TCATGA	1 cut(s)	414
PaqCI	CACCTGC	1 cut(s)	341
PciI	ACATGT	1 cut(s)	25
PfeI	GAWTC	1 cut(s)	278
PflMI	CCANNNNNTGG	1 cut(s)	829
PfoI	TCCNGGA	1 cut(s)	688
PkrI	GCNGC	5 cut(s)	62, 130, 226, 595, 781
PleI	GAGTC	2 cut(s)	443, 684
PmaCI	CACGTG	1 cut(s)	464
PmlI	CACGTG	1 cut(s)	464
PpsI	GAGTC	2 cut(s)	443, 684
Ppu21I	YACGTR	1 cut(s)	464
PscI	ACATGT	1 cut(s)	25
Psp6I	CCWGG	3 cut(s)	393, 438, 688
PspCI	CACGTG	1 cut(s)	464
PspGI	CCWGG	3 cut(s)	393, 438, 688
PspN4I	GGNNCC	3 cut(s)	178, 617, 736
PspPI	GGNCC	3 cut(s)	239, 385, 735
PstI	CTGCAG	1 cut(s)	598
PstNI	CAGNNNCTG	1 cut(s)	695
PsuI	RGATCY	1 cut(s)	615
PvuII	CAGCTG	1 cut(s)	800
RseI	CAYNNNNRTG	2 cut(s)	345, 425
SaqAI	TTAA	4 cut(s)	17, 450, 710, 895
SatI	GCNGC	5 cut(s)	61, 129, 225, 594, 780
Sau3AI	GATC	4 cut(s)	406, 471, 615, 883
Sau96I	GGNCC	3 cut(s)	239, 385, 735
SchI	GAGTC	2 cut(s)	444, 685
ScrFI	CCNGG	4 cut(s)	395, 440, 620, 690
SfaNI	GCATC	3 cut(s)	164, 211, 793
SfcI	CTRYAG	2 cut(s)	297, 594
SinI	GGWCC	2 cut(s)	239, 385
SmiMI	CAYNNNNRTG	2 cut(s)	345, 425
Sse9I	AATT	7 cut(s)	161, 447, 492, 625, 711, 717, 826
SsiI	CCGC	1 cut(s)	476
SspMI	CTAG	2 cut(s)	533, 791
StyD4I	CCNGG	4 cut(s)	393, 438, 618, 688
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	1 cut(s)	755
TaiI	ACGT	2 cut(s)	429, 466
TaqI	TCGA	1 cut(s)	666
TasI	AATT	7 cut(s)	161, 447, 492, 625, 711, 717, 826
TfiI	GAWTC	1 cut(s)	278
Tru1I	TTAA	4 cut(s)	17, 450, 710, 895
Tru9I	TTAA	4 cut(s)	17, 450, 710, 895
TscAI	CASTG	2 cut(s)	120, 405
TseFI	GTSAC	2 cut(s)	268, 511
TseI	GCWGC	5 cut(s)	60, 128, 224, 593, 779
Tsp45I	GTSAC	2 cut(s)	268, 511
TspDTI	ATGAA	5 cut(s)	69, 154, 244, 431, 714
TspRI	CASTG	2 cut(s)	120, 405
Van91I	CCANNNNNTGG	1 cut(s)	829
VpaK11BI	GGWCC	2 cut(s)	239, 385
XapI	RAATTY	1 cut(s)	161
XceI	RCATGY	1 cut(s)	29
XcmI	CCANNNNNNNNNTGG	1 cut(s)	209
XspI	CTAG	2 cut(s)	533, 791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.