Rh3BG033700

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0003666
Physical Location & Seq
Reverse (-)
2244852 .. 2251557
6706 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG033700.1

Sequence Viewer

Length: 441 bp
ATGTGGAGTTTTCGCAATTTGCAGGCTGTAGATTCTCAGGTGGTTTCCGACTATGTGAGGCACTTTCTTCATCAGCACACCATTCAGCTATGGCAGCCTGCTACTATCAAAGTTGTTGCTAATCTCATCAGGCTACTGTCATATGGCAACAAGAATATGTTGCAAACTGGGTTGATTGTTGGAGGCTGGGACAAGTATGAAGGGGGAATGATTTATGGAGTTCCGCTTGGAGGCACAATCATAGAGGCGCCATTTTCCATTGGAGGTTCTGGCTCCAGTTACTTGTATGGATTCTTTAATCAAGCATGGAGAGAAGGAATGACCAAGGACGAAGAGGAGAAGTTGGTTGTGAAGGCAGTTTCCCTAGCCATTGCACGAGATGGAGCCAGTGGTGGTGTTGTCCGCACTGTTGTGACATTGCTGTGGATTTGCCTTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005839 GO:0019774 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1905368 GO:1905369
KEGG Pathways
Metabolic & Signaling
ko03050 map03050
Pfam Domains
Protein Families
Proteasome

Protein Analysis

146

Amino Acids

16.14

Weight (kDa)

7.87

Isoelectric Point (pI)

33.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Proteasome PF00227 11 - 138 4.1e-24 Proteasome subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 247
AciI CCGC 2 cut(s) 224, 403
AcyI GRCGYC 1 cut(s) 248
AfiI CCNNNNNNNGG 1 cut(s) 230
AleI CACNNNNGTG 1 cut(s) 410
AluBI AGCT 1 cut(s) 88
AluI AGCT 1 cut(s) 88
ApeKI GCWGC 1 cut(s) 94
AspLEI GCGC 1 cut(s) 250
BanI GGYRCC 1 cut(s) 247
BauI CACGAG 1 cut(s) 375
BbvI GCAGC 1 cut(s) 106
BccI CCATC 1 cut(s) 374
BfaI CTAG 1 cut(s) 365
BfmI CTRYAG 1 cut(s) 27
BfoI RGCGCY 1 cut(s) 251
BisI GCNGC 1 cut(s) 95
BlsI GCNGC 1 cut(s) 96
BmiI GGNNCC 3 cut(s) 249, 274, 385
BmrI ACTGGG 1 cut(s) 177
BmuI ACTGGG 1 cut(s) 177
BpmI CTGGAG 1 cut(s) 259
BsaHI GRCGYC 1 cut(s) 248
BsaJI CCNNGG 1 cut(s) 324
Bsc4I CCNNNNNNNGG 1 cut(s) 230
Bse1I ACTGG 3 cut(s) 172, 276, 387
Bse3DI GCAATG 2 cut(s) 369, 416
BseDI CCNNGG 1 cut(s) 324
BseLI CCNNNNNNNGG 1 cut(s) 230
BseMI GCAATG 2 cut(s) 369, 416
BseMII CTCAG 1 cut(s) 50
BseNI ACTGG 3 cut(s) 172, 276, 387
BseRI GAGGAG 1 cut(s) 350
BseXI GCAGC 1 cut(s) 106
BseYI CCCAGC 1 cut(s) 186
BshNI GGYRCC 1 cut(s) 247
BslFI GGGAC 1 cut(s) 203
BslI CCNNNNNNNGG 1 cut(s) 230
BsmFI GGGAC 1 cut(s) 203
BspACI CCGC 2 cut(s) 224, 403
BspCNI CTCAG 1 cut(s) 49
BspLI GGNNCC 3 cut(s) 249, 274, 385
BspT107I GGYRCC 1 cut(s) 247
BsrDI GCAATG 2 cut(s) 369, 416
BsrI ACTGG 3 cut(s) 172, 276, 387
BssECI CCNNGG 1 cut(s) 324
BssNI GRCGYC 1 cut(s) 248
BssSI CACGAG 1 cut(s) 375
BssT1I CCWWGG 1 cut(s) 324
Bst2BI CACGAG 1 cut(s) 375
Bst4CI ACNGT 2 cut(s) 138, 409
Bst6I CTCTTC 1 cut(s) 327
BstACI GRCGYC 1 cut(s) 248
BstC8I GCNNGC 2 cut(s) 24, 99
BstDEI CTNAG 1 cut(s) 36
BstH2I RGCGCY 1 cut(s) 251
BstHHI GCGC 1 cut(s) 250
BstMWI GCNNNNNNNGC 1 cut(s) 94
BstSFI CTRYAG 1 cut(s) 27
BstV1I GCAGC 1 cut(s) 106
BtsIMutI CAGTG 2 cut(s) 394, 405
Cac8I GCNNGC 2 cut(s) 24, 99
CfoI GCGC 1 cut(s) 250
CviAII CATG 1 cut(s) 306
CviJI RGCY 8 cut(s) 26, 88, 97, 133, 186, 273, 368, 386
CviKI_1 RGCY 8 cut(s) 26, 88, 97, 133, 186, 273, 368, 386
DdeI CTNAG 1 cut(s) 36
DinI GGCGCC 1 cut(s) 249
Eam1104I CTCTTC 1 cut(s) 327
EarI CTCTTC 1 cut(s) 327
Eco130I CCWWGG 1 cut(s) 324
EcoT14I CCWWGG 1 cut(s) 324
EgeI GGCGCC 1 cut(s) 249
EheI GGCGCC 1 cut(s) 249
ErhI CCWWGG 1 cut(s) 324
FaeI CATG 1 cut(s) 309
FaqI GGGAC 1 cut(s) 203
FatI CATG 1 cut(s) 305
FauNDI CATATG 1 cut(s) 142
Fnu4HI GCNGC 1 cut(s) 95
Fsp4HI GCNGC 1 cut(s) 95
FspBI CTAG 1 cut(s) 365
GlaI GCGC 1 cut(s) 249
GluI GCNGC 1 cut(s) 95
GsaI CCCAGC 1 cut(s) 190
GsuI CTGGAG 1 cut(s) 259
HaeII RGCGCY 1 cut(s) 251
HhaI GCGC 1 cut(s) 250
Hin1I GRCGYC 1 cut(s) 248
Hin1II CATG 1 cut(s) 309
Hin6I GCGC 1 cut(s) 248
HinP1I GCGC 1 cut(s) 248
HinfI GANTC 2 cut(s) 32, 291
Hpy188I TCNGA 1 cut(s) 49
HpyAV CCTTC 3 cut(s) 194, 308, 346
HpyCH4III ACNGT 2 cut(s) 138, 409
HpyCH4V TGCA 3 cut(s) 22, 163, 374
HpyF10VI GCNNNNNNNGC 1 cut(s) 94
HpyF3I CTNAG 1 cut(s) 36
Hsp92I GRCGYC 1 cut(s) 248
Hsp92II CATG 1 cut(s) 309
HspAI GCGC 1 cut(s) 248
KasI GGCGCC 1 cut(s) 247
LmnI GCTCC 2 cut(s) 278, 383
LpnPI CCDG 9 cut(s) 8, 23, 111, 115, 153, 172, 255, 289, 400
Lsp1109I GCAGC 1 cut(s) 106
MaeI CTAG 1 cut(s) 365
MaeIII GTNAC 2 cut(s) 278, 412
MboII GAAGA 2 cut(s) 59, 344
MluCI AATT 1 cut(s) 16
Mly113I GGCGCC 1 cut(s) 248
MmeI TCCRAC 2 cut(s) 72, 160
MnlI CCTC 6 cut(s) 51, 176, 224, 238, 257, 328
MseI TTAA 1 cut(s) 297
MslI CAYNNNNRTG 2 cut(s) 410, 421
MwoI GCNNNNNNNGC 1 cut(s) 94
NarI GGCGCC 1 cut(s) 248
NdeI CATATG 1 cut(s) 142
NlaIII CATG 1 cut(s) 309
NlaIV GGNNCC 3 cut(s) 249, 274, 385
NmuCI GTSAC 1 cut(s) 412
OliI CACNNNNGTG 1 cut(s) 410
PfeI GAWTC 2 cut(s) 32, 291
PkrI GCNGC 1 cut(s) 96
PluTI GGCGCC 1 cut(s) 251
PspFI CCCAGC 1 cut(s) 186
PspN4I GGNNCC 3 cut(s) 249, 274, 385
RseI CAYNNNNRTG 2 cut(s) 410, 421
SaqAI TTAA 1 cut(s) 297
SatI GCNGC 1 cut(s) 95
SetI ASST 3 cut(s) 42, 90, 268
SfcI CTRYAG 1 cut(s) 27
SfoI GGCGCC 1 cut(s) 249
SmiMI CAYNNNNRTG 2 cut(s) 410, 421
Sse9I AATT 1 cut(s) 16
SsiI CCGC 2 cut(s) 224, 403
SspDI GGCGCC 1 cut(s) 247
SspMI CTAG 1 cut(s) 365
StyI CCWWGG 1 cut(s) 324
TaaI ACNGT 2 cut(s) 138, 409
TasI AATT 1 cut(s) 16
TfiI GAWTC 2 cut(s) 32, 291
Tru1I TTAA 1 cut(s) 297
Tru9I TTAA 1 cut(s) 297
TscAI CASTG 2 cut(s) 394, 412
TseFI GTSAC 1 cut(s) 412
TseI GCWGC 1 cut(s) 94
Tsp45I GTSAC 1 cut(s) 412
TspDTI ATGAA 2 cut(s) 59, 213
TspRI CASTG 2 cut(s) 394, 412
XspI CTAG 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.