Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003666

Physical Location & Seq

Genomic Coordinates Reverse (-)

7291041 .. 7293394

Gene Structure 2354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1103300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGCTTCTTCCGACATGGATCTCAACGCCCCTCACTCCATGGGTACCACCATCATTGGCGTCACCTACGACGGAGGCGTCGTACTCGCCGCCGACTCTCGTACCAGCACCGGAGTGTACGTGGCCAATCGCGCCTCCGACAAAATCACCCAGCTCACCGACAATGTCTACGTCTGCCGCTCTGGATCGGCTGCCGATTCCCAAGTTGTTTCCGACTACGTGCGCTACTTCCTCCATCAGCACACCATTCAGCTTGGCCAACCTGCGACTGTGAAAGTTTGTGCAAACCTCGTCAGGCTGCTGTCTTATGGCAACAAGAATATGTTGGAAACTGGGTTGATTGTTGGCGGCTGGGACAAGTACGAAGGCGGTAAGATTTATGGAATTCCTCTTGGTGGCACACTGCTAGAGCTGCCCTTTGCCATTGGAGGATCTGGCTCCAGTTACTTGTATGGATTTTTCGATCAAGCATGGAAAGAAGGAATGACCAAGGATGAAGCCGAGCAATTGGTGGTCAAGGCCGTTTCTCTTGCCATTGCACGAGATGGTGCCAGTGGGGGTGTTGTCCGTACTGTAGTTATCAATTCCGAGGGAGTGACTAGAAACTACTATCCTGGTGACAAACTTCCACTGTGGCATGAGGAGTTGGAGCCTCAAAACTCGTTATTGGACATCTTAAACTCCGCTAGTCCGGAGCCGATGAACACACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005839 GO:0019774 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome

Protein Analysis

238

Amino Acids

25.43

Weight (kDa)

4.94

Isoelectric Point (pI)

28.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome	PF00227	14 - 194	1.7e-49	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31300 AT4G31300 AT4G31300
fragaria_vesca	FvH4_2g36480
malus_domestica	MD08G1124600.v1.1 MD13G1234400.v1.1 MD15G1103300.v1.1 MD16G1239000.v1.1
prunus_persica	Prupe.1G065200_v2.0.a1 Prupe.1G456200_v2.0.a1 Prupe.1G456200_v2.0.a1
pyrus_communis	pycom08g10330 pycom13g20630 pycom16g19990
rosa_chinensis	RchiOBHm_Chr2g0148551 RchiOBHm_Chr6g0305401
rosa_laevigata	RLG00000008279 RLG00000010894 RLG00000027046
rosa_multiflora	Rmu_sc0002782.1_g000018 Rmu_sc0012564.1_g000002
rosa_roxburghii	Rroxscaffold_1G00015230 Rroxscaffold_7G00162840
rosa_rugosa	Rorug06G0340100
rosa_samantha	Rh2CG224200 Rh3AG033400 Rh3BG033700 Rh3DG033400 Rh5CG280300 Rh5CG513800 Rh6AG452000 Rh6BG449700 Rh6CG465900 Rh6DG452600
rosa_wichuraiana	Rw6G039380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	77
Acc36I	ACCTGC	1 cut(s)	271
Acc65I	GGTACC	1 cut(s)	44
AccB1I	GGYRCC	2 cut(s)	44, 548
AccBSI	CCGCTC	1 cut(s)	180
AccI	GTMKAC	1 cut(s)	168
AccII	CGCG	1 cut(s)	132
AccIII	TCCGGA	1 cut(s)	691
AciI	CCGC	5 cut(s)	90, 178, 348, 369, 684
AclWI	GGATC	3 cut(s)	27, 193, 439
AcoI	YGGCCR	2 cut(s)	123, 256
AcsI	RAATTY	1 cut(s)	384
AcyI	GRCGYC	2 cut(s)	60, 78
AfaI	GTAC	6 cut(s)	46, 84, 103, 119, 362, 571
AfiI	CCNNNNNNNGG	1 cut(s)	395
AjnI	CCWGG	1 cut(s)	613
AleI	CACNNNNGTG	1 cut(s)	113
AluBI	AGCT	3 cut(s)	154, 253, 412
AluI	AGCT	3 cut(s)	154, 253, 412
AlwI	GGATC	3 cut(s)	27, 193, 439
Aor13HI	TCCGGA	1 cut(s)	691
AoxI	GGCC	3 cut(s)	123, 256, 519
ApeKI	GCWGC	3 cut(s)	191, 298, 412
ApoI	RAATTY	1 cut(s)	384
Asp718I	GGTACC	1 cut(s)	44
AspLEI	GCGC	2 cut(s)	134, 225
AsuHPI	GGTGA	4 cut(s)	55, 139, 148, 629
BaeI	ACNNNNGTAYC	2 cut(s)	85, 118
BalI	TGGCCA	2 cut(s)	125, 258
BanI	GGYRCC	2 cut(s)	44, 548
BauI	CACGAG	1 cut(s)	540
BbvI	GCAGC	3 cut(s)	178, 285, 399
BccI	CCATC	3 cut(s)	59, 243, 539
BceAI	ACGGC	1 cut(s)	506
BciT130I	CCWGG	1 cut(s)	615
BfaI	CTAG	3 cut(s)	407, 600, 687
BfmI	CTRYAG	1 cut(s)	573
BfuAI	ACCTGC	1 cut(s)	271
BisI	GCNGC	6 cut(s)	90, 178, 192, 299, 349, 413
BlsI	GCNGC	6 cut(s)	91, 179, 193, 300, 350, 414
Bme1390I	CCNGG	1 cut(s)	615
BmiI	GGNNCC	5 cut(s)	46, 439, 550, 651, 696
BmrFI	CCNGG	1 cut(s)	615
BmrI	ACTGGG	1 cut(s)	342
BmuI	ACTGGG	1 cut(s)	342
BpmI	CTGGAG	1 cut(s)	424
BsaAI	YACGTR	2 cut(s)	121, 220
BsaHI	GRCGYC	2 cut(s)	60, 78
BsaJI	CCNNGG	3 cut(s)	39, 489, 588
BsaWI	WCCGGW	2 cut(s)	110, 691
BsaXI	ACNNNNNCTCC	4 cut(s)	66, 96, 105, 135
Bsc4I	CCNNNNNNNGG	1 cut(s)	395
Bse1I	ACTGG	3 cut(s)	337, 441, 552
Bse3DI	GCAATG	1 cut(s)	534
BseAI	TCCGGA	1 cut(s)	691
BseBI	CCWGG	1 cut(s)	615
BseDI	CCNNGG	3 cut(s)	39, 489, 588
BseGI	GGATG	1 cut(s)	499
BseLI	CCNNNNNNNGG	1 cut(s)	395
BseMI	GCAATG	1 cut(s)	534
BseNI	ACTGG	3 cut(s)	337, 441, 552
BseRI	GAGGAG	1 cut(s)	656
BseXI	GCAGC	3 cut(s)	178, 285, 399
BseYI	CCCAGC	2 cut(s)	150, 351
Bsh1236I	CGCG	1 cut(s)	132
BshFI	GGCC	3 cut(s)	125, 258, 521
BshNI	GGYRCC	2 cut(s)	44, 548
BsiSI	CCGG	2 cut(s)	111, 692
BslFI	GGGAC	1 cut(s)	368
BslI	CCNNNNNNNGG	1 cut(s)	395
BsmFI	GGGAC	1 cut(s)	368
BsnI	GGCC	3 cut(s)	125, 258, 521
Bsp13I	TCCGGA	1 cut(s)	691
Bsp143I	GATC	4 cut(s)	19, 185, 431, 463
Bsp19I	CCATGG	1 cut(s)	39
BspACI	CCGC	5 cut(s)	90, 178, 348, 369, 684
BspANI	GGCC	3 cut(s)	125, 258, 521
BspEI	TCCGGA	1 cut(s)	691
BspFNI	CGCG	1 cut(s)	132
BspLI	GGNNCC	5 cut(s)	46, 439, 550, 651, 696
BspMI	ACCTGC	1 cut(s)	271
BspPI	GGATC	3 cut(s)	27, 193, 439
BspT107I	GGYRCC	2 cut(s)	44, 548
BsrBI	CCGCTC	1 cut(s)	180
BsrDI	GCAATG	1 cut(s)	534
BsrI	ACTGG	3 cut(s)	337, 441, 552
BssECI	CCNNGG	3 cut(s)	39, 489, 588
BssMI	GATC	4 cut(s)	19, 185, 431, 463
BssNI	GRCGYC	2 cut(s)	60, 78
BssSI	CACGAG	1 cut(s)	540
BssT1I	CCWWGG	2 cut(s)	39, 489
Bst2BI	CACGAG	1 cut(s)	540
Bst2UI	CCWGG	1 cut(s)	615
Bst4CI	ACNGT	3 cut(s)	271, 574, 633
BstACI	GRCGYC	2 cut(s)	60, 78
BstBAI	YACGTR	2 cut(s)	121, 220
BstDSI	CCRYGG	1 cut(s)	39
BstF5I	GGATG	1 cut(s)	499
BstFNI	CGCG	1 cut(s)	132
BstHHI	GCGC	2 cut(s)	134, 225
BstKTI	GATC	4 cut(s)	22, 188, 434, 466
BstMBI	GATC	4 cut(s)	19, 185, 431, 463
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 412
BstNI	CCWGG	1 cut(s)	615
BstSCI	CCNGG	1 cut(s)	613
BstSFI	CTRYAG	1 cut(s)	573
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	3 cut(s)	178, 285, 399
BstX2I	RGATCY	2 cut(s)	19, 431
BstYI	RGATCY	2 cut(s)	19, 431
BsuRI	GGCC	3 cut(s)	125, 258, 521
BtgI	CCRYGG	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	499
BtsI	GCAGTG	1 cut(s)	401
BtsIMutI	CAGTG	3 cut(s)	401, 559, 629
BveI	ACCTGC	1 cut(s)	271
CfoI	GCGC	2 cut(s)	134, 225
CseI	GACGC	2 cut(s)	49, 67
Csp6I	GTAC	6 cut(s)	45, 83, 102, 118, 361, 570
CspCI	CAANNNNNGTGG	2 cut(s)	37, 72
CviAII	CATG	4 cut(s)	16, 40, 471, 638
CviQI	GTAC	6 cut(s)	45, 83, 102, 118, 361, 570
DpnI	GATC	4 cut(s)	21, 187, 433, 465
DpnII	GATC	4 cut(s)	19, 185, 431, 463
DrdI	GACNNNNNNGTC	1 cut(s)	77
DseDI	GACNNNNNNGTC	1 cut(s)	77
EaeI	YGGCCR	2 cut(s)	123, 256
Eco130I	CCWWGG	2 cut(s)	39, 489
EcoRI	GAATTC	1 cut(s)	384
EcoRII	CCWGG	1 cut(s)	613
EcoT14I	CCWWGG	2 cut(s)	39, 489
ErhI	CCWWGG	2 cut(s)	39, 489
FaeI	CATG	4 cut(s)	19, 43, 474, 641
FaiI	YATR	8 cut(s)	17, 41, 309, 323, 381, 453, 472, 639
FaqI	GGGAC	1 cut(s)	368
FatI	CATG	4 cut(s)	15, 39, 470, 637
FblI	GTMKAC	1 cut(s)	168
Fnu4HI	GCNGC	6 cut(s)	90, 178, 192, 299, 349, 413
FokI	GGATG	1 cut(s)	506
Fsp4HI	GCNGC	6 cut(s)	90, 178, 192, 299, 349, 413
FspBI	CTAG	3 cut(s)	407, 600, 687
GlaI	GCGC	2 cut(s)	133, 224
GluI	GCNGC	6 cut(s)	90, 178, 192, 299, 349, 413
GsaI	CCCAGC	2 cut(s)	154, 355
GsuI	CTGGAG	1 cut(s)	424
HaeIII	GGCC	3 cut(s)	125, 258, 521
HapII	CCGG	2 cut(s)	111, 692
HgaI	GACGC	2 cut(s)	49, 67
HhaI	GCGC	2 cut(s)	134, 225
Hin1I	GRCGYC	2 cut(s)	60, 78
Hin1II	CATG	4 cut(s)	19, 43, 474, 641
Hin6I	GCGC	2 cut(s)	132, 223
HinP1I	GCGC	2 cut(s)	132, 223
HinfI	GANTC	2 cut(s)	95, 197
HpaII	CCGG	2 cut(s)	111, 692
HphI	GGTGA	4 cut(s)	55, 139, 148, 629
Hpy166II	GTNNAC	2 cut(s)	118, 169
Hpy188I	TCNGA	4 cut(s)	13, 139, 214, 589
Hpy188III	TCNNGA	2 cut(s)	183, 692
Hpy8I	GTNNAC	2 cut(s)	118, 169
Hpy99I	CGWCG	2 cut(s)	74, 83
HpyAV	CCTTC	2 cut(s)	359, 473
HpyCH4III	ACNGT	3 cut(s)	271, 574, 633
HpyCH4IV	ACGT	3 cut(s)	120, 171, 219
HpyCH4V	TGCA	2 cut(s)	284, 539
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 412
HpySE526I	ACGT	3 cut(s)	120, 171, 219
Hsp92I	GRCGYC	2 cut(s)	60, 78
Hsp92II	CATG	4 cut(s)	19, 43, 474, 641
HspAI	GCGC	2 cut(s)	132, 223
Kpn2I	TCCGGA	1 cut(s)	691
KpnI	GGTACC	1 cut(s)	48
Kzo9I	GATC	4 cut(s)	19, 185, 431, 463
LmnI	GCTCC	3 cut(s)	443, 649, 694
Lsp1109I	GCAGC	3 cut(s)	178, 285, 399
MaeI	CTAG	3 cut(s)	407, 600, 687
MaeII	ACGT	3 cut(s)	120, 171, 219
MaeIII	GTNAC	4 cut(s)	61, 443, 595, 617
MalI	GATC	4 cut(s)	21, 187, 433, 465
MbiI	CCGCTC	1 cut(s)	180
MboI	GATC	4 cut(s)	19, 185, 431, 463
MfeI	CAATTG	1 cut(s)	506
MflI	RGATCY	2 cut(s)	19, 431
MlsI	TGGCCA	2 cut(s)	125, 258
MluCI	AATT	3 cut(s)	384, 506, 583
MluNI	TGGCCA	2 cut(s)	125, 258
MlyI	GAGTC	1 cut(s)	89
MmeI	TCCRAC	5 cut(s)	36, 162, 237, 306, 627
Mox20I	TGGCCA	2 cut(s)	125, 258
MroI	TCCGGA	1 cut(s)	691
MscI	TGGCCA	2 cut(s)	125, 258
MseI	TTAA	1 cut(s)	677
MslI	CAYNNNNRTG	1 cut(s)	113
Msp20I	TGGCCA	2 cut(s)	125, 258
MspI	CCGG	2 cut(s)	111, 692
MspR9I	CCNGG	1 cut(s)	615
MunI	CAATTG	1 cut(s)	506
MvaI	CCWGG	1 cut(s)	615
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	2 cut(s)	131, 412
NcoI	CCATGG	1 cut(s)	39
NdeII	GATC	4 cut(s)	19, 185, 431, 463
NlaIII	CATG	4 cut(s)	19, 43, 474, 641
NlaIV	GGNNCC	5 cut(s)	46, 439, 550, 651, 696
NmeAIII	GCCGAG	1 cut(s)	526
NmuCI	GTSAC	3 cut(s)	61, 595, 617
OliI	CACNNNNGTG	1 cut(s)	113
PcsI	WCGNNNNNNNCGW	2 cut(s)	75, 78
PfeI	GAWTC	1 cut(s)	197
PflFI	GACNNNGTC	1 cut(s)	164
PkrI	GCNGC	6 cut(s)	91, 179, 193, 300, 350, 414
PleI	GAGTC	1 cut(s)	89
PpsI	GAGTC	1 cut(s)	89
Ppu21I	YACGTR	2 cut(s)	121, 220
Psp6I	CCWGG	1 cut(s)	613
PspFI	CCCAGC	2 cut(s)	150, 351
PspGI	CCWGG	1 cut(s)	613
PspN4I	GGNNCC	5 cut(s)	46, 439, 550, 651, 696
PsuI	RGATCY	2 cut(s)	19, 431
PsyI	GACNNNGTC	1 cut(s)	164
RsaI	GTAC	6 cut(s)	46, 84, 103, 119, 362, 571
RsaNI	GTAC	6 cut(s)	45, 83, 102, 118, 361, 570
RseI	CAYNNNNRTG	1 cut(s)	113
SaqAI	TTAA	1 cut(s)	677
SatI	GCNGC	6 cut(s)	90, 178, 192, 299, 349, 413
Sau3AI	GATC	4 cut(s)	19, 185, 431, 463
SchI	GAGTC	1 cut(s)	89
ScrFI	CCNGG	1 cut(s)	615
SetI	ASST	9 cut(s)	68, 123, 156, 174, 222, 255, 265, 291, 414
SfcI	CTRYAG	1 cut(s)	573
SmiMI	CAYNNNNRTG	1 cut(s)	113
Sse9I	AATT	3 cut(s)	384, 506, 583
SsiI	CCGC	5 cut(s)	90, 178, 348, 369, 684
SspMI	CTAG	3 cut(s)	407, 600, 687
StyD4I	CCNGG	1 cut(s)	613
StyI	CCWWGG	2 cut(s)	39, 489
TaaI	ACNGT	3 cut(s)	271, 574, 633
TaiI	ACGT	3 cut(s)	123, 174, 222
TaqI	TCGA	1 cut(s)	462
TasI	AATT	3 cut(s)	384, 506, 583
TauI	GCSGC	3 cut(s)	92, 180, 351
TfiI	GAWTC	1 cut(s)	197
Tru1I	TTAA	1 cut(s)	677
Tru9I	TTAA	1 cut(s)	677
TscAI	CASTG	3 cut(s)	408, 559, 636
TseFI	GTSAC	3 cut(s)	61, 595, 617
TseI	GCWGC	3 cut(s)	191, 298, 412
Tsp45I	GTSAC	3 cut(s)	61, 595, 617
TspDTI	ATGAA	1 cut(s)	510
TspGWI	ACGGA	2 cut(s)	87, 557
TspRI	CASTG	3 cut(s)	408, 559, 636
Tth111I	GACNNNGTC	1 cut(s)	164
XapI	RAATTY	1 cut(s)	384
XmiI	GTMKAC	1 cut(s)	168
XspI	CTAG	3 cut(s)	407, 600, 687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.