FvH4_2g36480

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0003666
Physical Location & Seq
Reverse (-)
26700376 .. 26702659
2284 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g36480.t1

Sequence Viewer

Length: 723 bp
ATGTCTCACTCATCAATGGACGATATGAACCTCAACGCCCCTCACTCCATGGGCACCACCATCATCGGTGTCACCTACGACGGCGGCGTCGTCCTCGGCGCCGATTCCCGAACCTCCACCGGTGTCTATGTTGCGAATCGGTGCTCTGATAAAATCACGCAGCTCACAGACAATGTCTATGTGTGTCGTTCTGGATCAGCTGCAGATTCACAAGTTGTTTCCGACTATGTGAGGCACTTTCTCCACCAGCACACCATTCAGCTAGGGCAGCCTGCCACTGTCAAAGTCGCTGCGAATCTCATAAGGCTATTGTCCTATGGCAACAAGAACATGTTGCAAACCGGTTTGATTGTTGGCGGGTGGGACAAGTATGAAGGGGGAAAGATCTACGGTGTTCCTCTTGGTGGCACAGTTGTAGAGGCGCCCTTTGCCATCGGAGGGTCTGGCTCTAGTTACTTGTATGGGTTCTTTGATCAAGCATGGAAAGAAGGAATGACCAAGGAGGAAGCAGAGGCGTTGGTTGTAAAGGCTGTTTCACTGGCCATTGCTCGAGATGGCGCCAGTGGTGGTGTTGTCCGCACCGTTGTGATTAATTCTGAGGGAGTGAAGAGAAACTTCTACCCCGGTGACACACTGCCACTGTGGCATGAAGAGTTGGAGCCCCAGAACTCTCTTCTGGACATCTTGGCTGCTGGTGATGGCCCTGCCCCTATGACCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005839 GO:0019774 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1905368 GO:1905369
KEGG Pathways
Metabolic & Signaling
ko03050 map03050
Pfam Domains
Protein Families
Proteasome

Protein Analysis

241

Amino Acids

25.5

Weight (kDa)

5.2

Isoelectric Point (pI)

34.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Proteasome PF00227 17 - 197 4.7e-49 Proteasome subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 86
AccB1I GGYRCC 4 cut(s) 53, 98, 421, 557
AciI CCGC 3 cut(s) 84, 357, 577
AclWI GGATC 1 cut(s) 202
AcoI YGGCCR 1 cut(s) 540
AcyI GRCGYC 4 cut(s) 87, 99, 422, 558
AfiI CCNNNNNNNGG 2 cut(s) 404, 438
AflIII ACRYGT 1 cut(s) 330
AgeI ACCGGT 2 cut(s) 119, 341
AleI CACNNNNGTG 1 cut(s) 584
AluBI AGCT 3 cut(s) 163, 200, 262
AluI AGCT 3 cut(s) 163, 200, 262
Alw21I GWGCWC 1 cut(s) 146
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 1 cut(s) 202
Ama87I CYCGRG 1 cut(s) 549
AoxI GGCC 2 cut(s) 540, 700
ApeKI GCWGC 5 cut(s) 160, 200, 268, 290, 689
AseI ATTAAT 1 cut(s) 591
AsiGI ACCGGT 2 cut(s) 119, 341
AspLEI GCGC 3 cut(s) 101, 424, 560
AspS9I GGNCC 1 cut(s) 701
AsuC2I CCSGG 1 cut(s) 624
AsuHPI GGTGA 3 cut(s) 64, 638, 707
AvaI CYCGRG 1 cut(s) 549
BaeGI GKGCMC 1 cut(s) 56
BalI TGGCCA 1 cut(s) 542
BanI GGYRCC 4 cut(s) 53, 98, 421, 557
BanII GRGCYC 1 cut(s) 663
Bbv12I GWGCWC 1 cut(s) 146
BbvI GCAGC 5 cut(s) 172, 187, 277, 280, 676
BccI CCATC 4 cut(s) 68, 440, 548, 692
BceAI ACGGC 1 cut(s) 97
BclI TGATCA 1 cut(s) 472
BcnI CCSGG 1 cut(s) 624
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 2 cut(s) 263, 450
BfmI CTRYAG 1 cut(s) 201
BfoI RGCGCY 3 cut(s) 102, 425, 561
BglI GCCNNNNNGGC 1 cut(s) 643
BglII AGATCT 1 cut(s) 384
BisI GCNGC 6 cut(s) 85, 161, 201, 269, 291, 690
BlsI GCNGC 6 cut(s) 86, 162, 202, 270, 292, 691
Bme1390I CCNGG 1 cut(s) 624
BmeT110I CYCGRG 1 cut(s) 549
BmgT120I GGNCC 1 cut(s) 701
BmiI GGNNCC 5 cut(s) 55, 100, 423, 559, 660
BmrFI CCNGG 1 cut(s) 624
BpuMI CCSGG 1 cut(s) 624
BsaHI GRCGYC 4 cut(s) 87, 99, 422, 558
BsaJI CCNNGG 4 cut(s) 48, 94, 498, 622
BsaWI WCCGGW 2 cut(s) 119, 341
Bsc4I CCNNNNNNNGG 2 cut(s) 404, 438
Bse118I RCCGGY 2 cut(s) 119, 341
Bse1I ACTGG 2 cut(s) 543, 561
Bse3DI GCAATG 1 cut(s) 543
BseDI CCNNGG 4 cut(s) 48, 94, 498, 622
BseLI CCNNNNNNNGG 2 cut(s) 404, 438
BseMI GCAATG 1 cut(s) 543
BseMII CTCAG 1 cut(s) 588
BseNI ACTGG 2 cut(s) 543, 561
BseSI GKGCMC 1 cut(s) 56
BseXI GCAGC 5 cut(s) 172, 187, 277, 280, 676
BshFI GGCC 2 cut(s) 542, 702
BshNI GGYRCC 4 cut(s) 53, 98, 421, 557
BshTI ACCGGT 2 cut(s) 119, 341
BsiHKAI GWGCWC 1 cut(s) 146
BsiHKCI CYCGRG 1 cut(s) 549
BsiSI CCGG 3 cut(s) 120, 342, 624
BslFI GGGAC 1 cut(s) 377
BslI CCNNNNNNNGG 2 cut(s) 404, 438
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 1 cut(s) 377
BsnI GGCC 2 cut(s) 542, 702
BsoBI CYCGRG 1 cut(s) 549
Bsp1286I GDGCHC 3 cut(s) 56, 146, 663
Bsp143I GATC 3 cut(s) 194, 384, 472
Bsp19I CCATGG 1 cut(s) 48
BspACI CCGC 3 cut(s) 84, 357, 577
BspANI GGCC 2 cut(s) 542, 702
BspCNI CTCAG 1 cut(s) 589
BspLI GGNNCC 5 cut(s) 55, 100, 423, 559, 660
BspMAI CTGCAG 1 cut(s) 205
BspPI GGATC 1 cut(s) 202
BspT107I GGYRCC 4 cut(s) 53, 98, 421, 557
BsrDI GCAATG 1 cut(s) 543
BsrFI RCCGGY 2 cut(s) 119, 341
BsrI ACTGG 2 cut(s) 543, 561
BssAI RCCGGY 2 cut(s) 119, 341
BssECI CCNNGG 4 cut(s) 48, 94, 498, 622
BssMI GATC 3 cut(s) 194, 384, 472
BssNI GRCGYC 4 cut(s) 87, 99, 422, 558
BssT1I CCWWGG 2 cut(s) 48, 498
Bst4CI ACNGT 5 cut(s) 280, 392, 412, 583, 642
Bst6I CTCTTC 3 cut(s) 602, 645, 678
BstACI GRCGYC 4 cut(s) 87, 99, 422, 558
BstC8I GCNNGC 1 cut(s) 273
BstDEI CTNAG 1 cut(s) 597
BstDSI CCRYGG 1 cut(s) 48
BstH2I RGCGCY 3 cut(s) 102, 425, 561
BstHHI GCGC 3 cut(s) 101, 424, 560
BstKTI GATC 3 cut(s) 197, 387, 475
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 3 cut(s) 194, 384, 472
BstMWI GCNNNNNNNGC 3 cut(s) 268, 428, 643
BstNSI RCATGY 1 cut(s) 334
BstSCI CCNGG 1 cut(s) 622
BstSFI CTRYAG 1 cut(s) 201
BstSLI GKGCMC 1 cut(s) 56
BstV1I GCAGC 5 cut(s) 172, 187, 277, 280, 676
BstX2I RGATCY 1 cut(s) 384
BstYI RGATCY 1 cut(s) 384
BsuRI GGCC 2 cut(s) 542, 702
BtgI CCRYGG 1 cut(s) 48
BtsI GCAGTG 1 cut(s) 632
BtsIMutI CAGTG 5 cut(s) 276, 536, 568, 632, 638
Cac8I GCNNGC 1 cut(s) 273
CfoI GCGC 3 cut(s) 101, 424, 560
Cfr10I RCCGGY 2 cut(s) 119, 341
Cfr13I GGNCC 1 cut(s) 701
CseI GACGC 1 cut(s) 76
CspAI ACCGGT 2 cut(s) 119, 341
CviAII CATG 4 cut(s) 49, 331, 480, 647
DdeI CTNAG 1 cut(s) 597
DinI GGCGCC 3 cut(s) 100, 423, 559
DpnI GATC 3 cut(s) 196, 386, 474
DpnII GATC 3 cut(s) 194, 384, 472
DrdI GACNNNNNNGTC 1 cut(s) 86
DseDI GACNNNNNNGTC 1 cut(s) 86
EaeI YGGCCR 1 cut(s) 540
Eam1104I CTCTTC 3 cut(s) 602, 645, 678
EarI CTCTTC 3 cut(s) 602, 645, 678
Eco130I CCWWGG 2 cut(s) 48, 498
Eco24I GRGCYC 1 cut(s) 663
Eco88I CYCGRG 1 cut(s) 549
EcoT14I CCWWGG 2 cut(s) 48, 498
EcoT38I GRGCYC 1 cut(s) 663
EgeI GGCGCC 3 cut(s) 100, 423, 559
EheI GGCGCC 3 cut(s) 100, 423, 559
ErhI CCWWGG 2 cut(s) 48, 498
FaeI CATG 4 cut(s) 52, 334, 483, 650
FalI AAGNNNNNCTT 2 cut(s) 599, 631
FaqI GGGAC 1 cut(s) 377
FatI CATG 4 cut(s) 48, 330, 479, 646
FauI CCCGC 1 cut(s) 350
FbaI TGATCA 1 cut(s) 472
Fnu4HI GCNGC 6 cut(s) 85, 161, 201, 269, 291, 690
FriOI GRGCYC 1 cut(s) 663
Fsp4HI GCNGC 6 cut(s) 85, 161, 201, 269, 291, 690
FspBI CTAG 2 cut(s) 263, 450
GlaI GCGC 3 cut(s) 100, 423, 559
GluI GCNGC 6 cut(s) 85, 161, 201, 269, 291, 690
HaeII RGCGCY 3 cut(s) 102, 425, 561
HaeIII GGCC 2 cut(s) 542, 702
HapII CCGG 3 cut(s) 120, 342, 624
HgaI GACGC 1 cut(s) 76
HhaI GCGC 3 cut(s) 101, 424, 560
Hin1I GRCGYC 4 cut(s) 87, 99, 422, 558
Hin1II CATG 4 cut(s) 52, 334, 483, 650
Hin6I GCGC 3 cut(s) 99, 422, 558
HinP1I GCGC 3 cut(s) 99, 422, 558
HinfI GANTC 4 cut(s) 104, 136, 206, 295
HpaII CCGG 3 cut(s) 120, 342, 624
HphI GGTGA 3 cut(s) 64, 638, 707
Hpy188I TCNGA 4 cut(s) 148, 223, 437, 598
Hpy188III TCNNGA 4 cut(s) 108, 192, 551, 677
Hpy99I CGWCG 2 cut(s) 83, 92
HpyAV CCTTC 2 cut(s) 368, 482
HpyCH4III ACNGT 5 cut(s) 280, 392, 412, 583, 642
HpyCH4V TGCA 2 cut(s) 203, 337
HpyF10VI GCNNNNNNNGC 3 cut(s) 268, 428, 643
HpyF3I CTNAG 1 cut(s) 597
Hsp92I GRCGYC 4 cut(s) 87, 99, 422, 558
Hsp92II CATG 4 cut(s) 52, 334, 483, 650
HspAI GCGC 3 cut(s) 99, 422, 558
KasI GGCGCC 3 cut(s) 98, 421, 557
Ksp22I TGATCA 1 cut(s) 472
Kzo9I GATC 3 cut(s) 194, 384, 472
LmnI GCTCC 1 cut(s) 658
Lsp1109I GCAGC 5 cut(s) 172, 187, 277, 280, 676
MaeI CTAG 2 cut(s) 263, 450
MaeIII GTNAC 3 cut(s) 70, 452, 626
MalI GATC 3 cut(s) 196, 386, 474
MboI GATC 3 cut(s) 194, 384, 472
MboII GAAGA 3 cut(s) 619, 662, 665
MflI RGATCY 1 cut(s) 384
MhlI GDGCHC 3 cut(s) 56, 146, 663
MlsI TGGCCA 1 cut(s) 542
MluCI AATT 1 cut(s) 592
MluNI TGGCCA 1 cut(s) 542
Mly113I GGCGCC 3 cut(s) 99, 422, 558
MmeI TCCRAC 2 cut(s) 246, 636
Mox20I TGGCCA 1 cut(s) 542
MscI TGGCCA 1 cut(s) 542
MseI TTAA 1 cut(s) 591
MslI CAYNNNNRTG 1 cut(s) 584
Msp20I TGGCCA 1 cut(s) 542
MspA1I CMGCKG 1 cut(s) 200
MspI CCGG 3 cut(s) 120, 342, 624
MspR9I CCNGG 1 cut(s) 624
MwoI GCNNNNNNNGC 3 cut(s) 268, 428, 643
NarI GGCGCC 3 cut(s) 99, 422, 558
NciI CCSGG 1 cut(s) 624
NcoI CCATGG 1 cut(s) 48
NdeII GATC 3 cut(s) 194, 384, 472
NlaIII CATG 4 cut(s) 52, 334, 483, 650
NlaIV GGNNCC 5 cut(s) 55, 100, 423, 559, 660
NmeAIII GCCGAG 1 cut(s) 75
NmuCI GTSAC 2 cut(s) 70, 626
NspI RCATGY 1 cut(s) 334
OliI CACNNNNGTG 1 cut(s) 584
PaeR7I CTCGAG 1 cut(s) 549
PciI ACATGT 1 cut(s) 330
PcsI WCGNNNNNNNCGW 2 cut(s) 84, 87
PfeI GAWTC 4 cut(s) 104, 136, 206, 295
PflFI GACNNNGTC 1 cut(s) 173
PinAI ACCGGT 2 cut(s) 119, 341
PkrI GCNGC 6 cut(s) 86, 162, 202, 270, 292, 691
PluTI GGCGCC 3 cut(s) 102, 425, 561
PscI ACATGT 1 cut(s) 330
PshBI ATTAAT 1 cut(s) 591
PspN4I GGNNCC 5 cut(s) 55, 100, 423, 559, 660
PspPI GGNCC 1 cut(s) 701
PstI CTGCAG 1 cut(s) 205
PsuI RGATCY 1 cut(s) 384
PsyI GACNNNGTC 1 cut(s) 173
PvuII CAGCTG 1 cut(s) 200
RseI CAYNNNNRTG 1 cut(s) 584
SaqAI TTAA 1 cut(s) 591
SatI GCNGC 6 cut(s) 85, 161, 201, 269, 291, 690
Sau3AI GATC 3 cut(s) 194, 384, 472
Sau96I GGNCC 1 cut(s) 701
ScrFI CCNGG 1 cut(s) 624
SduI GDGCHC 3 cut(s) 56, 146, 663
SetI ASST 6 cut(s) 33, 77, 116, 165, 202, 264
SfcI CTRYAG 1 cut(s) 201
SfoI GGCGCC 3 cut(s) 100, 423, 559
Sfr274I CTCGAG 1 cut(s) 549
SgrAI CRCCGGYG 1 cut(s) 119
SlaI CTCGAG 1 cut(s) 549
SmiMI CAYNNNNRTG 1 cut(s) 584
SmlI CTYRAG 1 cut(s) 549
SmoI CTYRAG 1 cut(s) 549
Sse9I AATT 1 cut(s) 592
SsiI CCGC 3 cut(s) 84, 357, 577
SspDI GGCGCC 3 cut(s) 98, 421, 557
SspMI CTAG 2 cut(s) 263, 450
StyD4I CCNGG 1 cut(s) 622
StyI CCWWGG 2 cut(s) 48, 498
TaaI ACNGT 5 cut(s) 280, 392, 412, 583, 642
TaqI TCGA 1 cut(s) 550
TasI AATT 1 cut(s) 592
TauI GCSGC 1 cut(s) 87
TfiI GAWTC 4 cut(s) 104, 136, 206, 295
Tru1I TTAA 1 cut(s) 591
Tru9I TTAA 1 cut(s) 591
TscAI CASTG 5 cut(s) 283, 543, 568, 639, 645
TseFI GTSAC 2 cut(s) 70, 626
TseI GCWGC 5 cut(s) 160, 200, 268, 290, 689
Tsp45I GTSAC 2 cut(s) 70, 626
TspDTI ATGAA 3 cut(s) 41, 387, 663
TspRI CASTG 5 cut(s) 283, 543, 568, 639, 645
Tth111I GACNNNGTC 1 cut(s) 173
VspI ATTAAT 1 cut(s) 591
XceI RCATGY 1 cut(s) 334
XhoI CTCGAG 1 cut(s) 549
XspI CTAG 2 cut(s) 263, 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.