Rh2CG224200

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0003666
Physical Location & Seq
Reverse (-)
22584138 .. 22587614
3477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG224200.1

Sequence Viewer

Length: 351 bp
ATGAGCAATTACTTTTCGCCCTCCAAAGCGTTTTGTCCGAGCTCGTTGAAGGACAAGGTTTATAGGATCTTCTGCAGGGAAAAGCGTAAGCTCGCCGGTAGAAAGGGTGTCTATGTTGAGAATCAGTGCTCAAATAAAATCACTCAGCTCACGGATAATGTCTACGTCTGTCGCTCTGGATCACCTGCTACTGTCAAAGTTGTTGCTAATCTCATCAGGCTACTGTCATATGGCGGCACAGTCATAAAGGCGTCATTTGCCATTGGAGGTTCTGGCTCTAGTTACTTGTATGGATTCTTTGATCAAGCATGGAGAGAAGGAATGACTAGGGACGAAGCGGAGGTTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005839 GO:0019774 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1905368 GO:1905369
KEGG Pathways
Metabolic & Signaling
ko03050 map03050
Pfam Domains
Protein Families
Proteasome

Protein Analysis

116

Amino Acids

12.86

Weight (kDa)

9.51

Isoelectric Point (pI)

29.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Proteasome PF00227 75 - 114 6.9e-06 Proteasome subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 193
Acc36I ACCTGC 1 cut(s) 193
AccI GTMKAC 1 cut(s) 162
AciI CCGC 2 cut(s) 234, 338
AclWI GGATC 2 cut(s) 74, 187
AcyI GRCGYC 1 cut(s) 251
AgsI TTSAA 1 cut(s) 49
AluBI AGCT 3 cut(s) 42, 91, 148
AluI AGCT 3 cut(s) 42, 91, 148
Alw21I GWGCWC 2 cut(s) 44, 131
AlwI GGATC 2 cut(s) 74, 187
AsuHPI GGTGA 1 cut(s) 174
BanII GRGCYC 1 cut(s) 44
Bbv12I GWGCWC 2 cut(s) 44, 131
BclI TGATCA 1 cut(s) 301
BfaI CTAG 2 cut(s) 279, 327
BfmI CTRYAG 1 cut(s) 73
BfuAI ACCTGC 1 cut(s) 193
BisI GCNGC 1 cut(s) 235
BlsI GCNGC 1 cut(s) 236
BsaHI GRCGYC 1 cut(s) 251
Bse118I RCCGGY 1 cut(s) 95
BseMII CTCAG 1 cut(s) 158
BsiHKAI GWGCWC 2 cut(s) 44, 131
BsiSI CCGG 1 cut(s) 96
BslFI GGGAC 1 cut(s) 344
BsmFI GGGAC 1 cut(s) 344
Bsp1286I GDGCHC 2 cut(s) 44, 131
Bsp143I GATC 3 cut(s) 66, 179, 301
BspACI CCGC 2 cut(s) 234, 338
BspCNI CTCAG 1 cut(s) 157
BspMAI CTGCAG 1 cut(s) 77
BspMI ACCTGC 1 cut(s) 193
BspPI GGATC 2 cut(s) 74, 187
BsrFI RCCGGY 1 cut(s) 95
BssAI RCCGGY 1 cut(s) 95
BssMI GATC 3 cut(s) 66, 179, 301
BssNI GRCGYC 1 cut(s) 251
Bst4CI ACNGT 3 cut(s) 193, 225, 241
BstACI GRCGYC 1 cut(s) 251
BstC8I GCNNGC 1 cut(s) 93
BstDEI CTNAG 2 cut(s) 144, 348
BstKTI GATC 3 cut(s) 69, 182, 304
BstMBI GATC 3 cut(s) 66, 179, 301
BstMWI GCNNNNNNNGC 2 cut(s) 257, 344
BstSFI CTRYAG 1 cut(s) 73
BstX2I RGATCY 1 cut(s) 66
BstYI RGATCY 1 cut(s) 66
BtsIMutI CAGTG 1 cut(s) 131
BveI ACCTGC 1 cut(s) 193
Cac8I GCNNGC 1 cut(s) 93
Cfr10I RCCGGY 1 cut(s) 95
CseI GACGC 1 cut(s) 240
CviAII CATG 1 cut(s) 309
CviJI RGCY 5 cut(s) 42, 91, 148, 220, 276
CviKI_1 RGCY 5 cut(s) 42, 91, 148, 220, 276
DdeI CTNAG 2 cut(s) 144, 348
DpnI GATC 3 cut(s) 68, 181, 303
DpnII GATC 3 cut(s) 66, 179, 301
Ecl136II GAGCTC 1 cut(s) 42
Eco24I GRGCYC 1 cut(s) 44
Eco53kI GAGCTC 1 cut(s) 42
EcoICRI GAGCTC 1 cut(s) 42
EcoT38I GRGCYC 1 cut(s) 44
FaeI CATG 1 cut(s) 312
FaiI YATR 7 cut(s) 63, 114, 229, 231, 245, 291, 310
FaqI GGGAC 1 cut(s) 344
FatI CATG 1 cut(s) 308
FauNDI CATATG 1 cut(s) 229
FbaI TGATCA 1 cut(s) 301
FblI GTMKAC 1 cut(s) 162
Fnu4HI GCNGC 1 cut(s) 235
FriOI GRGCYC 1 cut(s) 44
Fsp4HI GCNGC 1 cut(s) 235
FspBI CTAG 2 cut(s) 279, 327
GluI GCNGC 1 cut(s) 235
HapII CCGG 1 cut(s) 96
HgaI GACGC 1 cut(s) 240
Hin1I GRCGYC 1 cut(s) 251
Hin1II CATG 1 cut(s) 312
HinfI GANTC 2 cut(s) 121, 294
HpaII CCGG 1 cut(s) 96
HphI GGTGA 1 cut(s) 174
Hpy166II GTNNAC 1 cut(s) 163
Hpy188I TCNGA 1 cut(s) 39
Hpy188III TCNNGA 1 cut(s) 177
Hpy8I GTNNAC 1 cut(s) 163
HpyAV CCTTC 2 cut(s) 43, 311
HpyCH4III ACNGT 3 cut(s) 193, 225, 241
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 1 cut(s) 75
HpyF10VI GCNNNNNNNGC 2 cut(s) 257, 344
HpyF3I CTNAG 2 cut(s) 144, 348
HpySE526I ACGT 1 cut(s) 165
Hsp92I GRCGYC 1 cut(s) 251
Hsp92II CATG 1 cut(s) 312
Ksp22I TGATCA 1 cut(s) 301
Kzo9I GATC 3 cut(s) 66, 179, 301
LpnPI CCDG 6 cut(s) 61, 109, 162, 198, 202, 258
MaeI CTAG 2 cut(s) 279, 327
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 1 cut(s) 281
MalI GATC 3 cut(s) 68, 181, 303
MboI GATC 3 cut(s) 66, 179, 301
MboII GAAGA 1 cut(s) 61
MflI RGATCY 1 cut(s) 66
MhlI GDGCHC 2 cut(s) 44, 131
MluCI AATT 1 cut(s) 7
MnlI CCTC 3 cut(s) 31, 260, 334
MspI CCGG 1 cut(s) 96
MwoI GCNNNNNNNGC 2 cut(s) 257, 344
NdeI CATATG 1 cut(s) 229
NdeII GATC 3 cut(s) 66, 179, 301
NlaIII CATG 1 cut(s) 312
PaqCI CACCTGC 1 cut(s) 193
PfeI GAWTC 2 cut(s) 121, 294
PkrI GCNGC 1 cut(s) 236
Psp124BI GAGCTC 1 cut(s) 44
PstI CTGCAG 1 cut(s) 77
PsuI RGATCY 1 cut(s) 66
SacI GAGCTC 1 cut(s) 44
SatI GCNGC 1 cut(s) 235
Sau3AI GATC 3 cut(s) 66, 179, 301
SduI GDGCHC 2 cut(s) 44, 131
SetI ASST 8 cut(s) 44, 60, 93, 150, 168, 187, 271, 345
SfcI CTRYAG 1 cut(s) 73
Sse9I AATT 1 cut(s) 7
SsiI CCGC 2 cut(s) 234, 338
SspMI CTAG 2 cut(s) 279, 327
SstI GAGCTC 1 cut(s) 44
TaaI ACNGT 3 cut(s) 193, 225, 241
TaiI ACGT 1 cut(s) 168
TasI AATT 1 cut(s) 7
TauI GCSGC 1 cut(s) 237
TfiI GAWTC 2 cut(s) 121, 294
TscAI CASTG 1 cut(s) 131
TspGWI ACGGA 1 cut(s) 167
TspRI CASTG 1 cut(s) 131
XmiI GTMKAC 1 cut(s) 162
XspI CTAG 2 cut(s) 279, 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.