Rh5CG513800

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0003666
Physical Location & Seq
Reverse (-)
71670182 .. 71682208
12027 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG513800.1

Sequence Viewer

Length: 312 bp
ATGGTCGGTCCTAATAATTCGGGAACTCAAGGTGTCTATGTTGAGAATCGGTTCTCGGATAAAATCACTCAGCTCATGGATAATGTCTACGTCTATCACTCTGGATCGGCTACAGATTCTCAGGTTGTTTCCGACTATGTGAGGCACTTTCTTCATCAGCACACGCTACTGTCATATGGCGGCACAGTCATAAAGGCGCCATTTGCCATTGGAGGTTCTGGCTCCAGTTACTTGTATGGATTCTTTGATCAAGCATGGAGAGAAGGAATGACCAAGGACGAAGCGGAGGTGCTGATCTCCGGAAGGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005839 GO:0019774 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1905368 GO:1905369
KEGG Pathways
Metabolic & Signaling
ko03050 map03050
Pfam Domains
Protein Families
Proteasome

Protein Analysis

103

Amino Acids

11.39

Weight (kDa)

5.42

Isoelectric Point (pI)

12.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Proteasome PF00227 58 - 99 8e-07 Proteasome subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 196
AccI GTMKAC 1 cut(s) 87
AccIII TCCGGA 1 cut(s) 299
AciI CCGC 2 cut(s) 180, 284
AclWI GGATC 1 cut(s) 112
AcyI GRCGYC 1 cut(s) 197
AluBI AGCT 1 cut(s) 73
AluI AGCT 1 cut(s) 73
AlwI GGATC 1 cut(s) 112
Aor13HI TCCGGA 1 cut(s) 299
Asp700I GAANNNNTTC 1 cut(s) 50
AspLEI GCGC 1 cut(s) 199
AspS9I GGNCC 1 cut(s) 8
AvaII GGWCC 1 cut(s) 8
BanI GGYRCC 1 cut(s) 196
BclI TGATCA 1 cut(s) 247
BfmI CTRYAG 1 cut(s) 111
BfoI RGCGCY 1 cut(s) 200
BisI GCNGC 1 cut(s) 181
BlsI GCNGC 1 cut(s) 182
Bme18I GGWCC 1 cut(s) 8
BmgT120I GGNCC 1 cut(s) 8
BmiI GGNNCC 2 cut(s) 198, 223
BpmI CTGGAG 1 cut(s) 208
BpuEI CTTGAG 1 cut(s) 12
BsaHI GRCGYC 1 cut(s) 197
BsaJI CCNNGG 1 cut(s) 273
BsaWI WCCGGW 1 cut(s) 299
Bse1I ACTGG 1 cut(s) 225
BseAI TCCGGA 1 cut(s) 299
BseDI CCNNGG 1 cut(s) 273
BseMII CTCAG 2 cut(s) 83, 134
BseNI ACTGG 1 cut(s) 225
BshNI GGYRCC 1 cut(s) 196
BsiSI CCGG 1 cut(s) 300
Bsp13I TCCGGA 1 cut(s) 299
Bsp143I GATC 3 cut(s) 104, 247, 294
BspACI CCGC 2 cut(s) 180, 284
BspCNI CTCAG 2 cut(s) 82, 133
BspEI TCCGGA 1 cut(s) 299
BspLI GGNNCC 2 cut(s) 198, 223
BspPI GGATC 1 cut(s) 112
BspT107I GGYRCC 1 cut(s) 196
BsrI ACTGG 1 cut(s) 225
BssECI CCNNGG 1 cut(s) 273
BssMI GATC 3 cut(s) 104, 247, 294
BssNI GRCGYC 1 cut(s) 197
BssT1I CCWWGG 1 cut(s) 273
Bst4CI ACNGT 2 cut(s) 171, 187
BstACI GRCGYC 1 cut(s) 197
BstDEI CTNAG 2 cut(s) 69, 120
BstH2I RGCGCY 1 cut(s) 200
BstHHI GCGC 1 cut(s) 199
BstKTI GATC 3 cut(s) 107, 250, 297
BstMBI GATC 3 cut(s) 104, 247, 294
BstMWI GCNNNNNNNGC 1 cut(s) 203
BstSFI CTRYAG 1 cut(s) 111
CfoI GCGC 1 cut(s) 199
Cfr13I GGNCC 1 cut(s) 8
CviAII CATG 2 cut(s) 76, 255
CviJI RGCY 3 cut(s) 73, 110, 222
CviKI_1 RGCY 3 cut(s) 73, 110, 222
DdeI CTNAG 2 cut(s) 69, 120
DinI GGCGCC 1 cut(s) 198
DpnI GATC 3 cut(s) 106, 249, 296
DpnII GATC 3 cut(s) 104, 247, 294
Eco130I CCWWGG 1 cut(s) 273
Eco47I GGWCC 1 cut(s) 8
EcoT14I CCWWGG 1 cut(s) 273
EgeI GGCGCC 1 cut(s) 198
EheI GGCGCC 1 cut(s) 198
ErhI CCWWGG 1 cut(s) 273
FaeI CATG 2 cut(s) 79, 258
FaiI YATR 8 cut(s) 39, 77, 138, 175, 177, 191, 237, 256
FatI CATG 2 cut(s) 75, 254
FauNDI CATATG 1 cut(s) 175
FbaI TGATCA 1 cut(s) 247
FblI GTMKAC 1 cut(s) 87
Fnu4HI GCNGC 1 cut(s) 181
Fsp4HI GCNGC 1 cut(s) 181
GlaI GCGC 1 cut(s) 198
GluI GCNGC 1 cut(s) 181
GsuI CTGGAG 1 cut(s) 208
HaeII RGCGCY 1 cut(s) 200
HapII CCGG 1 cut(s) 300
HhaI GCGC 1 cut(s) 199
Hin1I GRCGYC 1 cut(s) 197
Hin1II CATG 2 cut(s) 79, 258
Hin6I GCGC 1 cut(s) 197
HinP1I GCGC 1 cut(s) 197
HinfI GANTC 3 cut(s) 46, 116, 240
HpaII CCGG 1 cut(s) 300
Hpy166II GTNNAC 1 cut(s) 88
Hpy188I TCNGA 2 cut(s) 58, 133
Hpy188III TCNNGA 3 cut(s) 21, 102, 300
Hpy8I GTNNAC 1 cut(s) 88
HpyAV CCTTC 2 cut(s) 257, 297
HpyCH4III ACNGT 2 cut(s) 171, 187
HpyCH4IV ACGT 1 cut(s) 90
HpyF10VI GCNNNNNNNGC 1 cut(s) 203
HpyF3I CTNAG 2 cut(s) 69, 120
HpySE526I ACGT 1 cut(s) 90
Hsp92I GRCGYC 1 cut(s) 197
Hsp92II CATG 2 cut(s) 79, 258
HspAI GCGC 1 cut(s) 197
KasI GGCGCC 1 cut(s) 196
Kpn2I TCCGGA 1 cut(s) 299
Ksp22I TGATCA 1 cut(s) 247
Kzo9I GATC 3 cut(s) 104, 247, 294
LmnI GCTCC 1 cut(s) 227
LpnPI CCDG 4 cut(s) 87, 107, 204, 238
MaeII ACGT 1 cut(s) 90
MaeIII GTNAC 1 cut(s) 227
MalI GATC 3 cut(s) 106, 249, 296
MboI GATC 3 cut(s) 104, 247, 294
MboII GAAGA 1 cut(s) 143
MluCI AATT 1 cut(s) 16
Mly113I GGCGCC 1 cut(s) 197
MmeI TCCRAC 1 cut(s) 156
MnlI CCTC 3 cut(s) 135, 206, 280
MroI TCCGGA 1 cut(s) 299
MroXI GAANNNNTTC 1 cut(s) 50
MspI CCGG 1 cut(s) 300
MwoI GCNNNNNNNGC 1 cut(s) 203
NarI GGCGCC 1 cut(s) 197
NdeI CATATG 1 cut(s) 175
NdeII GATC 3 cut(s) 104, 247, 294
NlaIII CATG 2 cut(s) 79, 258
NlaIV GGNNCC 2 cut(s) 198, 223
PdmI GAANNNNTTC 1 cut(s) 50
PfeI GAWTC 3 cut(s) 46, 116, 240
PkrI GCNGC 1 cut(s) 182
PluTI GGCGCC 1 cut(s) 200
PspN4I GGNNCC 2 cut(s) 198, 223
PspPI GGNCC 1 cut(s) 8
SatI GCNGC 1 cut(s) 181
Sau3AI GATC 3 cut(s) 104, 247, 294
Sau96I GGNCC 1 cut(s) 8
SetI ASST 6 cut(s) 34, 75, 93, 126, 217, 291
SfcI CTRYAG 1 cut(s) 111
SfoI GGCGCC 1 cut(s) 198
SinI GGWCC 1 cut(s) 8
SmlI CTYRAG 1 cut(s) 27
SmoI CTYRAG 1 cut(s) 27
Sse9I AATT 1 cut(s) 16
SsiI CCGC 2 cut(s) 180, 284
SspDI GGCGCC 1 cut(s) 196
StyI CCWWGG 1 cut(s) 273
TaaI ACNGT 2 cut(s) 171, 187
TaiI ACGT 1 cut(s) 93
TasI AATT 1 cut(s) 16
TauI GCSGC 1 cut(s) 183
TfiI GAWTC 3 cut(s) 46, 116, 240
TspDTI ATGAA 1 cut(s) 143
VpaK11BI GGWCC 1 cut(s) 8
XmiI GTMKAC 1 cut(s) 87
XmnI GAANNNNTTC 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.