The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G31300 AT4G31300 AT4G31300 |
| fragaria_vesca | FvH4_2g36480 |
| malus_domestica | MD08G1124600.v1.1 MD13G1234400.v1.1 MD15G1103300.v1.1 MD16G1239000.v1.1 |
| prunus_persica | Prupe.1G065200_v2.0.a1 Prupe.1G456200_v2.0.a1 Prupe.1G456200_v2.0.a1 |
| pyrus_communis | pycom08g10330 pycom13g20630 pycom16g19990 |
| rosa_chinensis | RchiOBHm_Chr2g0148551 RchiOBHm_Chr6g0305401 |
| rosa_laevigata | RLG00000008279 RLG00000010894 RLG00000027046 |
| rosa_multiflora | Rmu_sc0002782.1_g000018 Rmu_sc0012564.1_g000002 |
| rosa_roxburghii | Rroxscaffold_1G00015230 Rroxscaffold_7G00162840 |
| rosa_rugosa | Rorug06G0340100 |
| rosa_samantha | Rh2CG224200 Rh3AG033400 Rh3BG033700 Rh3DG033400 Rh5CG280300 Rh5CG513800 Rh6AG452000 Rh6BG449700 Rh6CG465900 Rh6DG452600 |
| rosa_wichuraiana | Rw6G039380 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 578 |
| Acc65I | GGTACC | 1 cut(s) | 41 |
| AccB1I | GGYRCC | 3 cut(s) | 41, 86, 545 |
| AccI | GTMKAC | 1 cut(s) | 165 |
| AccII | CGCG | 1 cut(s) | 683 |
| AciI | CCGC | 5 cut(s) | 72, 191, 366, 565, 681 |
| AclWI | GGATC | 2 cut(s) | 24, 190 |
| AcoI | YGGCCR | 1 cut(s) | 120 |
| AcsI | RAATTY | 3 cut(s) | 381, 580, 655 |
| AcyI | GRCGYC | 1 cut(s) | 57 |
| AfaI | GTAC | 2 cut(s) | 43, 359 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 392, 426 |
| AflIII | ACRYGT | 1 cut(s) | 168 |
| AgsI | TTSAA | 1 cut(s) | 676 |
| AleI | CACNNNNGTG | 1 cut(s) | 110 |
| AluBI | AGCT | 7 cut(s) | 151, 250, 409, 441, 467, 518, 622 |
| AluI | AGCT | 7 cut(s) | 151, 250, 409, 441, 467, 518, 622 |
| Alw26I | GTCTC | 1 cut(s) | 528 |
| AlwI | GGATC | 2 cut(s) | 24, 190 |
| AoxI | GGCC | 1 cut(s) | 120 |
| ApeKI | GCWGC | 3 cut(s) | 188, 256, 409 |
| ApoI | RAATTY | 3 cut(s) | 381, 580, 655 |
| Asp718I | GGTACC | 1 cut(s) | 41 |
| AspLEI | GCGC | 1 cut(s) | 222 |
| AspS9I | GGNCC | 1 cut(s) | 435 |
| AsuHPI | GGTGA | 2 cut(s) | 136, 145 |
| AvaII | GGWCC | 1 cut(s) | 435 |
| BalI | TGGCCA | 1 cut(s) | 122 |
| BanI | GGYRCC | 3 cut(s) | 41, 86, 545 |
| BauI | CACGAG | 2 cut(s) | 537, 635 |
| BbvI | GCAGC | 3 cut(s) | 175, 268, 396 |
| BccI | CCATC | 2 cut(s) | 56, 536 |
| BceAI | ACGGC | 1 cut(s) | 85 |
| BcoDI | GTCTC | 1 cut(s) | 528 |
| BfaI | CTAG | 2 cut(s) | 323, 404 |
| BfmI | CTRYAG | 1 cut(s) | 570 |
| BisI | GCNGC | 4 cut(s) | 73, 189, 257, 410 |
| BlsI | GCNGC | 4 cut(s) | 74, 190, 258, 411 |
| Bme18I | GGWCC | 1 cut(s) | 435 |
| BmgT120I | GGNCC | 1 cut(s) | 435 |
| BmiI | GGNNCC | 5 cut(s) | 43, 88, 436, 547, 648 |
| BmrI | ACTGGG | 1 cut(s) | 339 |
| BmuI | ACTGGG | 1 cut(s) | 339 |
| BpmI | CTGGAG | 1 cut(s) | 129 |
| Bpu10I | CCTNAGC | 1 cut(s) | 690 |
| BsaAI | YACGTR | 2 cut(s) | 169, 217 |
| BsaBI | GATNNNNATC | 1 cut(s) | 15 |
| BsaHI | GRCGYC | 1 cut(s) | 57 |
| BsaJI | CCNNGG | 2 cut(s) | 36, 82 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 102, 116, 132, 146 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 392, 426 |
| Bse1I | ACTGG | 3 cut(s) | 112, 334, 549 |
| Bse3DI | GCAATG | 2 cut(s) | 531, 659 |
| Bse8I | GATNNNNATC | 1 cut(s) | 15 |
| BseDI | CCNNGG | 2 cut(s) | 36, 82 |
| BseJI | GATNNNNATC | 1 cut(s) | 15 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 392, 426 |
| BseMI | GCAATG | 2 cut(s) | 531, 659 |
| BseMII | CTCAG | 4 cut(s) | 212, 576, 665, 681 |
| BseNI | ACTGG | 3 cut(s) | 112, 334, 549 |
| BseRI | GAGGAG | 2 cut(s) | 18, 653 |
| BseXI | GCAGC | 3 cut(s) | 175, 268, 396 |
| BseYI | CCCAGC | 1 cut(s) | 147 |
| Bsh1236I | CGCG | 1 cut(s) | 683 |
| BshFI | GGCC | 1 cut(s) | 122 |
| BshNI | GGYRCC | 3 cut(s) | 41, 86, 545 |
| BslFI | GGGAC | 1 cut(s) | 365 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 392, 426 |
| BsmAI | GTCTC | 1 cut(s) | 528 |
| BsmFI | GGGAC | 1 cut(s) | 365 |
| BsnI | GGCC | 1 cut(s) | 122 |
| Bsp143I | GATC | 3 cut(s) | 16, 182, 460 |
| Bsp19I | CCATGG | 1 cut(s) | 36 |
| BspACI | CCGC | 5 cut(s) | 72, 191, 366, 565, 681 |
| BspANI | GGCC | 1 cut(s) | 122 |
| BspCNI | CTCAG | 4 cut(s) | 211, 577, 664, 682 |
| BspFNI | CGCG | 1 cut(s) | 683 |
| BspLI | GGNNCC | 5 cut(s) | 43, 88, 436, 547, 648 |
| BspPI | GGATC | 2 cut(s) | 24, 190 |
| BspT107I | GGYRCC | 3 cut(s) | 41, 86, 545 |
| BsrDI | GCAATG | 2 cut(s) | 531, 659 |
| BsrI | ACTGG | 3 cut(s) | 112, 334, 549 |
| BssECI | CCNNGG | 2 cut(s) | 36, 82 |
| BssMI | GATC | 3 cut(s) | 16, 182, 460 |
| BssNI | GRCGYC | 1 cut(s) | 57 |
| BssSI | CACGAG | 2 cut(s) | 537, 635 |
| BssT1I | CCWWGG | 1 cut(s) | 36 |
| Bst2BI | CACGAG | 2 cut(s) | 537, 635 |
| Bst4CI | ACNGT | 4 cut(s) | 128, 268, 300, 571 |
| BstACI | GRCGYC | 1 cut(s) | 57 |
| BstBAI | YACGTR | 2 cut(s) | 169, 217 |
| BstC8I | GCNNGC | 1 cut(s) | 261 |
| BstDEI | CTNAG | 4 cut(s) | 198, 585, 651, 690 |
| BstDSI | CCRYGG | 1 cut(s) | 36 |
| BstFNI | CGCG | 1 cut(s) | 683 |
| BstHHI | GCGC | 1 cut(s) | 222 |
| BstKTI | GATC | 3 cut(s) | 19, 185, 463 |
| BstMAI | GTCTC | 1 cut(s) | 528 |
| BstMBI | GATC | 3 cut(s) | 16, 182, 460 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 128, 256, 409 |
| BstSFI | CTRYAG | 1 cut(s) | 570 |
| BstUI | CGCG | 1 cut(s) | 683 |
| BstV1I | GCAGC | 3 cut(s) | 175, 268, 396 |
| BstX2I | RGATCY | 1 cut(s) | 16 |
| BstYI | RGATCY | 1 cut(s) | 16 |
| BsuRI | GGCC | 1 cut(s) | 122 |
| BtgI | CCRYGG | 1 cut(s) | 36 |
| BtsI | GCAGTG | 1 cut(s) | 398 |
| BtsIMutI | CAGTG | 4 cut(s) | 105, 398, 556, 567 |
| Cac8I | GCNNGC | 1 cut(s) | 261 |
| CfoI | GCGC | 1 cut(s) | 222 |
| Cfr13I | GGNCC | 1 cut(s) | 435 |
| CseI | GACGC | 1 cut(s) | 46 |
| Csp6I | GTAC | 2 cut(s) | 42, 358 |
| CviAII | CATG | 1 cut(s) | 37 |
| CviQI | GTAC | 2 cut(s) | 42, 358 |
| DdeI | CTNAG | 4 cut(s) | 198, 585, 651, 690 |
| DpnI | GATC | 3 cut(s) | 18, 184, 462 |
| DpnII | GATC | 3 cut(s) | 16, 182, 460 |
| EaeI | YGGCCR | 1 cut(s) | 120 |
| Eco130I | CCWWGG | 1 cut(s) | 36 |
| Eco32I | GATATC | 1 cut(s) | 670 |
| Eco47I | GGWCC | 1 cut(s) | 435 |
| EcoRI | GAATTC | 2 cut(s) | 381, 655 |
| EcoRV | GATATC | 1 cut(s) | 670 |
| EcoT14I | CCWWGG | 1 cut(s) | 36 |
| ErhI | CCWWGG | 1 cut(s) | 36 |
| FaeI | CATG | 1 cut(s) | 40 |
| FaqI | GGGAC | 1 cut(s) | 365 |
| FatI | CATG | 1 cut(s) | 36 |
| FblI | GTMKAC | 1 cut(s) | 165 |
| Fnu4HI | GCNGC | 4 cut(s) | 73, 189, 257, 410 |
| Fsp4HI | GCNGC | 4 cut(s) | 73, 189, 257, 410 |
| FspBI | CTAG | 2 cut(s) | 323, 404 |
| GlaI | GCGC | 1 cut(s) | 221 |
| GluI | GCNGC | 4 cut(s) | 73, 189, 257, 410 |
| GsaI | CCCAGC | 1 cut(s) | 151 |
| GsuI | CTGGAG | 1 cut(s) | 129 |
| HaeIII | GGCC | 1 cut(s) | 122 |
| HgaI | GACGC | 1 cut(s) | 46 |
| HhaI | GCGC | 1 cut(s) | 222 |
| Hin1I | GRCGYC | 1 cut(s) | 57 |
| Hin1II | CATG | 1 cut(s) | 40 |
| Hin6I | GCGC | 1 cut(s) | 220 |
| HinP1I | GCGC | 1 cut(s) | 220 |
| HindIII | AAGCTT | 2 cut(s) | 465, 620 |
| HinfI | GANTC | 3 cut(s) | 92, 194, 685 |
| HphI | GGTGA | 2 cut(s) | 136, 145 |
| Hpy166II | GTNNAC | 1 cut(s) | 166 |
| Hpy188I | TCNGA | 5 cut(s) | 10, 136, 211, 586, 654 |
| Hpy188III | TCNNGA | 4 cut(s) | 96, 180, 673, 689 |
| Hpy8I | GTNNAC | 1 cut(s) | 166 |
| HpyAV | CCTTC | 3 cut(s) | 239, 356, 470 |
| HpyCH4III | ACNGT | 4 cut(s) | 128, 268, 300, 571 |
| HpyCH4IV | ACGT | 2 cut(s) | 168, 216 |
| HpyCH4V | TGCA | 2 cut(s) | 263, 536 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 128, 256, 409 |
| HpyF3I | CTNAG | 4 cut(s) | 198, 585, 651, 690 |
| HpySE526I | ACGT | 2 cut(s) | 168, 216 |
| Hsp92I | GRCGYC | 1 cut(s) | 57 |
| Hsp92II | CATG | 1 cut(s) | 40 |
| HspAI | GCGC | 1 cut(s) | 220 |
| KpnI | GGTACC | 1 cut(s) | 45 |
| Kzo9I | GATC | 3 cut(s) | 16, 182, 460 |
| LmnI | GCTCC | 2 cut(s) | 31, 646 |
| Lsp1109I | GCAGC | 3 cut(s) | 175, 268, 396 |
| MaeI | CTAG | 2 cut(s) | 323, 404 |
| MaeII | ACGT | 2 cut(s) | 168, 216 |
| MaeIII | GTNAC | 2 cut(s) | 58, 592 |
| MalI | GATC | 3 cut(s) | 18, 184, 462 |
| MboI | GATC | 3 cut(s) | 16, 182, 460 |
| MflI | RGATCY | 1 cut(s) | 16 |
| MlsI | TGGCCA | 1 cut(s) | 122 |
| MluCI | AATT | 4 cut(s) | 381, 503, 580, 655 |
| MluNI | TGGCCA | 1 cut(s) | 122 |
| MlyI | GAGTC | 2 cut(s) | 86, 694 |
| MmeI | TCCRAC | 1 cut(s) | 624 |
| MnlI | CCTC | 9 cut(s) | 39, 92, 142, 296, 396, 419, 580, 631, 660 |
| Mox20I | TGGCCA | 1 cut(s) | 122 |
| MscI | TGGCCA | 1 cut(s) | 122 |
| MseI | TTAA | 1 cut(s) | 21 |
| MslI | CAYNNNNRTG | 1 cut(s) | 110 |
| Msp20I | TGGCCA | 1 cut(s) | 122 |
| MvnI | CGCG | 1 cut(s) | 683 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 128, 256, 409 |
| NcoI | CCATGG | 1 cut(s) | 36 |
| NdeII | GATC | 3 cut(s) | 16, 182, 460 |
| NlaIII | CATG | 1 cut(s) | 40 |
| NlaIV | GGNNCC | 5 cut(s) | 43, 88, 436, 547, 648 |
| NmuCI | GTSAC | 2 cut(s) | 58, 592 |
| OliI | CACNNNNGTG | 1 cut(s) | 110 |
| PfeI | GAWTC | 1 cut(s) | 194 |
| PkrI | GCNGC | 4 cut(s) | 74, 190, 258, 411 |
| PleI | GAGTC | 2 cut(s) | 86, 693 |
| PpsI | GAGTC | 2 cut(s) | 86, 693 |
| Ppu21I | YACGTR | 2 cut(s) | 169, 217 |
| PsiI | TTATAA | 1 cut(s) | 578 |
| PspFI | CCCAGC | 1 cut(s) | 147 |
| PspN4I | GGNNCC | 5 cut(s) | 43, 88, 436, 547, 648 |
| PspPI | GGNCC | 1 cut(s) | 435 |
| PsuI | RGATCY | 1 cut(s) | 16 |
| RsaI | GTAC | 2 cut(s) | 43, 359 |
| RsaNI | GTAC | 2 cut(s) | 42, 358 |
| RseI | CAYNNNNRTG | 1 cut(s) | 110 |
| SaqAI | TTAA | 1 cut(s) | 21 |
| SatI | GCNGC | 4 cut(s) | 73, 189, 257, 410 |
| Sau3AI | GATC | 3 cut(s) | 16, 182, 460 |
| Sau96I | GGNCC | 1 cut(s) | 435 |
| SchI | GAGTC | 2 cut(s) | 86, 694 |
| SfcI | CTRYAG | 1 cut(s) | 570 |
| SinI | GGWCC | 1 cut(s) | 435 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 110 |
| Sse9I | AATT | 4 cut(s) | 381, 503, 580, 655 |
| SsiI | CCGC | 5 cut(s) | 72, 191, 366, 565, 681 |
| SspMI | CTAG | 2 cut(s) | 323, 404 |
| StyI | CCWWGG | 1 cut(s) | 36 |
| TaaI | ACNGT | 4 cut(s) | 128, 268, 300, 571 |
| TaiI | ACGT | 2 cut(s) | 171, 219 |
| TaqI | TCGA | 2 cut(s) | 97, 459 |
| TasI | AATT | 4 cut(s) | 381, 503, 580, 655 |
| TauI | GCSGC | 1 cut(s) | 75 |
| TfiI | GAWTC | 1 cut(s) | 194 |
| Tru1I | TTAA | 1 cut(s) | 21 |
| Tru9I | TTAA | 1 cut(s) | 21 |
| TscAI | CASTG | 4 cut(s) | 112, 405, 556, 574 |
| TseFI | GTSAC | 2 cut(s) | 58, 592 |
| TseI | GCWGC | 3 cut(s) | 188, 256, 409 |
| Tsp45I | GTSAC | 2 cut(s) | 58, 592 |
| TspDTI | ATGAA | 3 cut(s) | 221, 507, 648 |
| TspRI | CASTG | 4 cut(s) | 112, 405, 556, 574 |
| VpaK11BI | GGWCC | 1 cut(s) | 435 |
| XapI | RAATTY | 3 cut(s) | 381, 580, 655 |
| XmiI | GTMKAC | 1 cut(s) | 165 |
| XspI | CTAG | 2 cut(s) | 323, 404 |