Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0003666

Physical Location & Seq

Genomic Coordinates Reverse (-)

8671991 .. 8674056

Gene Structure 2066 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g10330.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGCTTCTTCCGACATGGATCACAACGCCCCTCACTCTATGGGTACCACCATCATCGGCGTCACCTACGACGGAGGTGTCGTCCTTGGCGCCGACTCTCGTACCAGCACCGGAGTATACGTGGCCAATCGCGCCTCCGACAAAATCACCCAGCTCACCGACAATGTCTACGTCTGCCGCTCTGGATCGGCTGCCGATTCCCAGGTTGTTTCCGATTACGTTCGTTACTTCCTTCATCAGCACACTCAGCTTGGACAACCTGCGACCGTCAAAGTTTGTGCAAACCTCGTCAGGCTGCTGTCCTATGGTAACAAGAATATGTTGGAAACTGGTCTGATTGTTGGCGGGTGGGACAAGTACGAAGGCGGTAAGATTTATGGGATTCCTCTTGGTGGCACACTGCTAGAGCTGCCCTTTGCCATTGGAGGATCTGGCTCCAGTTACTTGTATGGATTTATCGATCAAGCATGGAAAGAAGGAATGACCAAGGACGAAGCTGAGCAATTGGTGGTTAAGGCTGTTTCCCTCGCCATTGCACGAGATGGTGCCAGTGGGGGTGTTGTCCGTACTGTAGTTATAAATTCTGAGGGAGTGACAAGAAACTACTATCCTGGCGACAAACTTCCACTCTGGCATGAGGAGTTGGAGCCTCAGAACTCATTGTTGGACATATTGAACACTGCTAGTCCCGAGCCAATGAACATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005839 GO:0019774 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome

Protein Analysis

236

Amino Acids

25.19

Weight (kDa)

5.05

Isoelectric Point (pI)

30.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31300 AT4G31300 AT4G31300
fragaria_vesca	FvH4_2g36480
malus_domestica	MD08G1124600.v1.1 MD13G1234400.v1.1 MD15G1103300.v1.1 MD16G1239000.v1.1
prunus_persica	Prupe.1G065200_v2.0.a1 Prupe.1G456200_v2.0.a1 Prupe.1G456200_v2.0.a1
pyrus_communis	pycom08g10330 pycom13g20630 pycom16g19990
rosa_chinensis	RchiOBHm_Chr2g0148551 RchiOBHm_Chr6g0305401
rosa_laevigata	RLG00000008279 RLG00000010894 RLG00000027046
rosa_multiflora	Rmu_sc0002782.1_g000018 Rmu_sc0012564.1_g000002
rosa_roxburghii	Rroxscaffold_1G00015230 Rroxscaffold_7G00162840
rosa_rugosa	Rorug06G0340100
rosa_samantha	Rh2CG224200 Rh3AG033400 Rh3BG033700 Rh3DG033400 Rh5CG280300 Rh5CG513800 Rh6AG452000 Rh6BG449700 Rh6CG465900 Rh6DG452600
rosa_wichuraiana	Rw6G039380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	578
AasI	GACNNNNNNGTC	1 cut(s)	77
Acc36I	ACCTGC	1 cut(s)	268
Acc65I	GGTACC	1 cut(s)	44
AccB1I	GGYRCC	3 cut(s)	44, 89, 545
AccBSI	CCGCTC	1 cut(s)	180
AccI	GTMKAC	2 cut(s)	117, 168
AccII	CGCG	1 cut(s)	132
AciI	CCGC	3 cut(s)	178, 345, 366
AclWI	GGATC	3 cut(s)	27, 193, 436
AcoI	YGGCCR	1 cut(s)	123
AcsI	RAATTY	1 cut(s)	580
AcyI	GRCGYC	2 cut(s)	60, 90
AfaI	GTAC	4 cut(s)	46, 103, 359, 568
AfiI	CCNNNNNNNGG	1 cut(s)	392
AgsI	TTSAA	1 cut(s)	676
AjnI	CCWGG	2 cut(s)	201, 610
AjuI	GAANNNNNNNTTGG	2 cut(s)	647, 679
AluBI	AGCT	4 cut(s)	154, 250, 409, 497
AluI	AGCT	4 cut(s)	154, 250, 409, 497
AlwI	GGATC	3 cut(s)	27, 193, 436
Ama87I	CYCGRG	1 cut(s)	689
AoxI	GGCC	1 cut(s)	123
ApeKI	GCWGC	3 cut(s)	191, 295, 409
ApoI	RAATTY	1 cut(s)	580
Asp718I	GGTACC	1 cut(s)	44
AspLEI	GCGC	2 cut(s)	92, 134
AsuHPI	GGTGA	3 cut(s)	55, 139, 148
AvaI	CYCGRG	1 cut(s)	689
BaeI	ACNNNNGTAYC	2 cut(s)	85, 118
BalI	TGGCCA	1 cut(s)	125
BanI	GGYRCC	3 cut(s)	44, 89, 545
BauI	CACGAG	1 cut(s)	537
BbvI	GCAGC	3 cut(s)	178, 282, 396
BccI	CCATC	2 cut(s)	59, 536
BciT130I	CCWGG	2 cut(s)	203, 612
BfaI	CTAG	2 cut(s)	404, 684
BfmI	CTRYAG	1 cut(s)	570
BfoI	RGCGCY	1 cut(s)	93
BfuAI	ACCTGC	1 cut(s)	268
BisI	GCNGC	4 cut(s)	178, 192, 296, 410
BlpI	GCTNAGC	1 cut(s)	498
BlsI	GCNGC	4 cut(s)	179, 193, 297, 411
Bme1390I	CCNGG	2 cut(s)	203, 612
BmeT110I	CYCGRG	1 cut(s)	689
BmiI	GGNNCC	5 cut(s)	46, 91, 436, 547, 648
BmrFI	CCNGG	2 cut(s)	203, 612
BpmI	CTGGAG	1 cut(s)	421
Bpu1102I	GCTNAGC	1 cut(s)	498
Bsa29I	ATCGAT	1 cut(s)	459
BsaAI	YACGTR	1 cut(s)	121
BsaHI	GRCGYC	2 cut(s)	60, 90
BsaJI	CCNNGG	3 cut(s)	85, 201, 486
BsaWI	WCCGGW	1 cut(s)	110
BsaXI	ACNNNNNCTCC	4 cut(s)	66, 96, 105, 135
Bsc4I	CCNNNNNNNGG	1 cut(s)	392
Bse1I	ACTGG	3 cut(s)	334, 438, 549
Bse3DI	GCAATG	1 cut(s)	531
BseBI	CCWGG	2 cut(s)	203, 612
BseCI	ATCGAT	1 cut(s)	459
BseDI	CCNNGG	3 cut(s)	85, 201, 486
BseLI	CCNNNNNNNGG	1 cut(s)	392
BseMI	GCAATG	1 cut(s)	531
BseMII	CTCAG	4 cut(s)	260, 489, 576, 665
BseNI	ACTGG	3 cut(s)	334, 438, 549
BseRI	GAGGAG	1 cut(s)	653
BseXI	GCAGC	3 cut(s)	178, 282, 396
BseYI	CCCAGC	1 cut(s)	150
Bsh1236I	CGCG	1 cut(s)	132
Bsh1285I	CGRYCG	1 cut(s)	267
BshFI	GGCC	1 cut(s)	125
BshNI	GGYRCC	3 cut(s)	44, 89, 545
BshVI	ATCGAT	1 cut(s)	459
BsiEI	CGRYCG	1 cut(s)	267
BsiHKCI	CYCGRG	1 cut(s)	689
BsiSI	CCGG	1 cut(s)	111
BslFI	GGGAC	2 cut(s)	365, 672
BslI	CCNNNNNNNGG	1 cut(s)	392
BsmFI	GGGAC	2 cut(s)	365, 672
BsnI	GGCC	1 cut(s)	125
BsoBI	CYCGRG	1 cut(s)	689
Bsp143I	GATC	4 cut(s)	19, 185, 428, 460
Bsp1720I	GCTNAGC	1 cut(s)	498
BspACI	CCGC	3 cut(s)	178, 345, 366
BspANI	GGCC	1 cut(s)	125
BspCNI	CTCAG	4 cut(s)	259, 490, 577, 664
BspDI	ATCGAT	1 cut(s)	459
BspFNI	CGCG	1 cut(s)	132
BspLI	GGNNCC	5 cut(s)	46, 91, 436, 547, 648
BspMI	ACCTGC	1 cut(s)	268
BspPI	GGATC	3 cut(s)	27, 193, 436
BspT107I	GGYRCC	3 cut(s)	44, 89, 545
BsrBI	CCGCTC	1 cut(s)	180
BsrDI	GCAATG	1 cut(s)	531
BsrI	ACTGG	3 cut(s)	334, 438, 549
BssECI	CCNNGG	3 cut(s)	85, 201, 486
BssMI	GATC	4 cut(s)	19, 185, 428, 460
BssNAI	GTATAC	1 cut(s)	118
BssNI	GRCGYC	2 cut(s)	60, 90
BssSI	CACGAG	1 cut(s)	537
BssT1I	CCWWGG	2 cut(s)	85, 486
Bst1107I	GTATAC	1 cut(s)	118
Bst2BI	CACGAG	1 cut(s)	537
Bst2UI	CCWGG	2 cut(s)	203, 612
Bst4CI	ACNGT	2 cut(s)	268, 571
BstACI	GRCGYC	2 cut(s)	60, 90
BstBAI	YACGTR	1 cut(s)	121
BstDEI	CTNAG	4 cut(s)	246, 498, 585, 651
BstFNI	CGCG	1 cut(s)	132
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	2 cut(s)	92, 134
BstKTI	GATC	4 cut(s)	22, 188, 431, 463
BstMBI	GATC	4 cut(s)	19, 185, 428, 460
BstMCI	CGRYCG	1 cut(s)	267
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 247, 409
BstNI	CCWGG	2 cut(s)	203, 612
BstSCI	CCNGG	2 cut(s)	201, 610
BstSFI	CTRYAG	1 cut(s)	570
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	3 cut(s)	178, 282, 396
BstX2I	RGATCY	1 cut(s)	428
BstYI	RGATCY	1 cut(s)	428
BstZ17I	GTATAC	1 cut(s)	118
Bsu15I	ATCGAT	1 cut(s)	459
BsuRI	GGCC	1 cut(s)	125
BsuTUI	ATCGAT	1 cut(s)	459
BtsI	GCAGTG	2 cut(s)	398, 678
BtsIMutI	CAGTG	3 cut(s)	398, 556, 678
BveI	ACCTGC	1 cut(s)	268
CfoI	GCGC	2 cut(s)	92, 134
ClaI	ATCGAT	1 cut(s)	459
CseI	GACGC	1 cut(s)	49
Csp6I	GTAC	4 cut(s)	45, 102, 358, 567
CviAII	CATG	3 cut(s)	16, 468, 635
CviQI	GTAC	4 cut(s)	45, 102, 358, 567
DdeI	CTNAG	4 cut(s)	246, 498, 585, 651
DinI	GGCGCC	1 cut(s)	91
DpnI	GATC	4 cut(s)	21, 187, 430, 462
DpnII	GATC	4 cut(s)	19, 185, 428, 460
DrdI	GACNNNNNNGTC	1 cut(s)	77
DseDI	GACNNNNNNGTC	1 cut(s)	77
EaeI	YGGCCR	1 cut(s)	123
Eco130I	CCWWGG	2 cut(s)	85, 486
Eco88I	CYCGRG	1 cut(s)	689
EcoRII	CCWGG	2 cut(s)	201, 610
EcoT14I	CCWWGG	2 cut(s)	85, 486
EgeI	GGCGCC	1 cut(s)	91
EheI	GGCGCC	1 cut(s)	91
ErhI	CCWWGG	2 cut(s)	85, 486
FaeI	CATG	3 cut(s)	19, 471, 638
FaqI	GGGAC	2 cut(s)	365, 672
FatI	CATG	3 cut(s)	15, 467, 634
FauI	CCCGC	1 cut(s)	338
FauNDI	CATATG	1 cut(s)	704
FblI	GTMKAC	2 cut(s)	117, 168
Fnu4HI	GCNGC	4 cut(s)	178, 192, 296, 410
Fsp4HI	GCNGC	4 cut(s)	178, 192, 296, 410
FspBI	CTAG	2 cut(s)	404, 684
GlaI	GCGC	2 cut(s)	91, 133
GluI	GCNGC	4 cut(s)	178, 192, 296, 410
GsaI	CCCAGC	1 cut(s)	154
GsuI	CTGGAG	1 cut(s)	421
HaeII	RGCGCY	1 cut(s)	93
HaeIII	GGCC	1 cut(s)	125
HapII	CCGG	1 cut(s)	111
HgaI	GACGC	1 cut(s)	49
HhaI	GCGC	2 cut(s)	92, 134
Hin1I	GRCGYC	2 cut(s)	60, 90
Hin1II	CATG	3 cut(s)	19, 471, 638
Hin6I	GCGC	2 cut(s)	90, 132
HinP1I	GCGC	2 cut(s)	90, 132
HinfI	GANTC	3 cut(s)	95, 197, 382
HpaII	CCGG	1 cut(s)	111
HphI	GGTGA	3 cut(s)	55, 139, 148
Hpy166II	GTNNAC	2 cut(s)	118, 169
Hpy188I	TCNGA	6 cut(s)	13, 139, 214, 336, 586, 654
Hpy188III	TCNNGA	2 cut(s)	183, 689
Hpy8I	GTNNAC	2 cut(s)	118, 169
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	3 cut(s)	242, 356, 470
HpyCH4III	ACNGT	2 cut(s)	268, 571
HpyCH4IV	ACGT	3 cut(s)	120, 171, 219
HpyCH4V	TGCA	2 cut(s)	281, 536
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 247, 409
HpyF3I	CTNAG	4 cut(s)	246, 498, 585, 651
HpySE526I	ACGT	3 cut(s)	120, 171, 219
Hsp92I	GRCGYC	2 cut(s)	60, 90
Hsp92II	CATG	3 cut(s)	19, 471, 638
HspAI	GCGC	2 cut(s)	90, 132
KasI	GGCGCC	1 cut(s)	89
KpnI	GGTACC	1 cut(s)	48
Kzo9I	GATC	4 cut(s)	19, 185, 428, 460
LmnI	GCTCC	2 cut(s)	440, 646
Lsp1109I	GCAGC	3 cut(s)	178, 282, 396
MaeI	CTAG	2 cut(s)	404, 684
MaeII	ACGT	3 cut(s)	120, 171, 219
MaeIII	GTNAC	5 cut(s)	61, 224, 308, 440, 592
MalI	GATC	4 cut(s)	21, 187, 430, 462
MbiI	CCGCTC	1 cut(s)	180
MboI	GATC	4 cut(s)	19, 185, 428, 460
MfeI	CAATTG	1 cut(s)	503
MflI	RGATCY	1 cut(s)	428
MlsI	TGGCCA	1 cut(s)	125
MluCI	AATT	2 cut(s)	503, 580
MluNI	TGGCCA	1 cut(s)	125
Mly113I	GGCGCC	1 cut(s)	90
MlyI	GAGTC	1 cut(s)	89
MmeI	TCCRAC	5 cut(s)	36, 162, 303, 624, 645
Mox20I	TGGCCA	1 cut(s)	125
MscI	TGGCCA	1 cut(s)	125
MseI	TTAA	1 cut(s)	513
Msp20I	TGGCCA	1 cut(s)	125
MspI	CCGG	1 cut(s)	111
MspR9I	CCNGG	2 cut(s)	203, 612
MunI	CAATTG	1 cut(s)	503
MvaI	CCWGG	2 cut(s)	203, 612
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	3 cut(s)	131, 247, 409
NarI	GGCGCC	1 cut(s)	90
NdeI	CATATG	1 cut(s)	704
NdeII	GATC	4 cut(s)	19, 185, 428, 460
NlaIII	CATG	3 cut(s)	19, 471, 638
NlaIV	GGNNCC	5 cut(s)	46, 91, 436, 547, 648
NmuCI	GTSAC	2 cut(s)	61, 592
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PfeI	GAWTC	2 cut(s)	197, 382
PflFI	GACNNNGTC	1 cut(s)	164
PkrI	GCNGC	4 cut(s)	179, 193, 297, 411
PleI	GAGTC	1 cut(s)	89
PluTI	GGCGCC	1 cut(s)	93
PpsI	GAGTC	1 cut(s)	89
Ppu21I	YACGTR	1 cut(s)	121
PsiI	TTATAA	1 cut(s)	578
Psp6I	CCWGG	2 cut(s)	201, 610
PspFI	CCCAGC	1 cut(s)	150
PspGI	CCWGG	2 cut(s)	201, 610
PspN4I	GGNNCC	5 cut(s)	46, 91, 436, 547, 648
PsuI	RGATCY	1 cut(s)	428
PsyI	GACNNNGTC	1 cut(s)	164
RsaI	GTAC	4 cut(s)	46, 103, 359, 568
RsaNI	GTAC	4 cut(s)	45, 102, 358, 567
SaqAI	TTAA	1 cut(s)	513
SatI	GCNGC	4 cut(s)	178, 192, 296, 410
Sau3AI	GATC	4 cut(s)	19, 185, 428, 460
SchI	GAGTC	1 cut(s)	89
ScrFI	CCNGG	2 cut(s)	203, 612
SfcI	CTRYAG	1 cut(s)	570
SfoI	GGCGCC	1 cut(s)	91
Sse9I	AATT	2 cut(s)	503, 580
SsiI	CCGC	3 cut(s)	178, 345, 366
SspDI	GGCGCC	1 cut(s)	89
SspMI	CTAG	2 cut(s)	404, 684
StyD4I	CCNGG	2 cut(s)	201, 610
StyI	CCWWGG	2 cut(s)	85, 486
TaaI	ACNGT	2 cut(s)	268, 571
TaiI	ACGT	3 cut(s)	123, 174, 222
TaqI	TCGA	1 cut(s)	459
TasI	AATT	2 cut(s)	503, 580
TauI	GCSGC	1 cut(s)	180
TfiI	GAWTC	2 cut(s)	197, 382
Tru1I	TTAA	1 cut(s)	513
Tru9I	TTAA	1 cut(s)	513
TscAI	CASTG	3 cut(s)	405, 556, 685
TseFI	GTSAC	2 cut(s)	61, 592
TseI	GCWGC	3 cut(s)	191, 295, 409
Tsp45I	GTSAC	2 cut(s)	61, 592
TspDTI	ATGAA	1 cut(s)	224
TspGWI	ACGGA	2 cut(s)	87, 554
TspRI	CASTG	3 cut(s)	405, 556, 685
Tth111I	GACNNNGTC	1 cut(s)	164
XapI	RAATTY	1 cut(s)	580
XmiI	GTMKAC	2 cut(s)	117, 168
XspI	CTAG	2 cut(s)	404, 684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.