Rroxscaffold_1G00015230

Single-stranded DNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0003666
Physical Location & Seq
Reverse (-)
18984252 .. 18986180
1929 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00015230.1

Sequence Viewer

Length: 354 bp
ATGACCAAGGACGAAGCGGAGAAGTTGGTTATGAAGGCAGTTTCCCTAGCCATTGCAAGAGATGGAGCTAGTGGTGGTGTTGTCCGCACTGTTGTGTATTACAGCGGTGGGCACTTGAGCGGCTCAACCGACGGTGGCACTAATGATGCAAAGAAAATTGGTGCTGAAGAAGATTTTGAGAATTTTCTTGGTTGCTTCAAAGATACGAATATGCAAGCCCAAGGTGTGGATCCCAAGAGGGGTTGGGGATTTCGTGGTGTGCACAAGGGCCTTGGATTACAAGCTGTGAAATATTTGGCTGCCAAATATGAAGAGCTAGGGTGTGAAGTGAAATGGATGGGCAAGCCTCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SSB

Protein Analysis

117

Amino Acids

12.59

Weight (kDa)

8.53

Isoelectric Point (pI)

12.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 226
AccBSI CCGCTC 1 cut(s) 120
AciI CCGC 4 cut(s) 17, 85, 105, 120
AclWI GGATC 2 cut(s) 224, 237
AcsI RAATTY 1 cut(s) 181
AcuI CTGAAG 1 cut(s) 186
AfiI CCNNNNNNNGG 2 cut(s) 226, 239
AgsI TTSAA 1 cut(s) 199
AleI CACNNNNGTG 1 cut(s) 92
AluBI AGCT 3 cut(s) 68, 284, 316
AluI AGCT 3 cut(s) 68, 284, 316
Alw21I GWGCWC 1 cut(s) 264
Alw44I GTGCAC 1 cut(s) 260
AlwI GGATC 2 cut(s) 224, 237
AoxI GGCC 1 cut(s) 268
ApaLI GTGCAC 1 cut(s) 260
ApeKI GCWGC 1 cut(s) 299
ApoI RAATTY 1 cut(s) 181
AspS9I GGNCC 1 cut(s) 268
BaeGI GKGCMC 2 cut(s) 114, 264
BamHI GGATCC 1 cut(s) 229
Bbv12I GWGCWC 1 cut(s) 264
BbvI GCAGC 1 cut(s) 286
BccI CCATC 2 cut(s) 56, 331
BfaI CTAG 3 cut(s) 47, 69, 317
BisI GCNGC 2 cut(s) 121, 300
BlsI GCNGC 2 cut(s) 122, 301
BmgT120I GGNCC 1 cut(s) 268
BmiI GGNNCC 1 cut(s) 231
BmsI GCATC 1 cut(s) 136
BpuEI CTTGAG 1 cut(s) 136
BsaJI CCNNGG 3 cut(s) 6, 220, 271
Bsc4I CCNNNNNNNGG 2 cut(s) 226, 239
Bse3DI GCAATG 1 cut(s) 51
BseDI CCNNGG 3 cut(s) 6, 220, 271
BseGI GGATG 1 cut(s) 342
BseLI CCNNNNNNNGG 2 cut(s) 226, 239
BseMI GCAATG 1 cut(s) 51
BseSI GKGCMC 2 cut(s) 114, 264
BseXI GCAGC 1 cut(s) 286
BshFI GGCC 1 cut(s) 270
BsiHKAI GWGCWC 1 cut(s) 264
BslI CCNNNNNNNGG 2 cut(s) 226, 239
BsnI GGCC 1 cut(s) 270
Bsp1286I GDGCHC 2 cut(s) 114, 264
Bsp143I GATC 1 cut(s) 229
BspACI CCGC 4 cut(s) 17, 85, 105, 120
BspANI GGCC 1 cut(s) 270
BspLI GGNNCC 1 cut(s) 231
BspPI GGATC 2 cut(s) 224, 237
BspQI GCTCTTC 1 cut(s) 306
BsrBI CCGCTC 1 cut(s) 120
BsrDI GCAATG 1 cut(s) 51
BssECI CCNNGG 3 cut(s) 6, 220, 271
BssMI GATC 1 cut(s) 229
BssT1I CCWWGG 3 cut(s) 6, 220, 271
Bst4CI ACNGT 2 cut(s) 91, 134
Bst6I CTCTTC 1 cut(s) 306
BstC8I GCNNGC 2 cut(s) 216, 344
BstF5I GGATG 1 cut(s) 342
BstKTI GATC 1 cut(s) 232
BstMBI GATC 1 cut(s) 229
BstSLI GKGCMC 2 cut(s) 114, 264
BstV1I GCAGC 1 cut(s) 286
BstX2I RGATCY 1 cut(s) 229
BstYI RGATCY 1 cut(s) 229
BsuRI GGCC 1 cut(s) 270
BtsCI GGATG 1 cut(s) 342
BtsIMutI CAGTG 1 cut(s) 87
Cac8I GCNNGC 2 cut(s) 216, 344
Cfr13I GGNCC 1 cut(s) 268
CviJI RGCY 9 cut(s) 50, 68, 123, 218, 270, 284, 299, 316, 346
CviKI_1 RGCY 9 cut(s) 50, 68, 123, 218, 270, 284, 299, 316, 346
DpnI GATC 1 cut(s) 231
DpnII GATC 1 cut(s) 229
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
Eco130I CCWWGG 3 cut(s) 6, 220, 271
Eco57I CTGAAG 1 cut(s) 186
EcoO109I RGGNCCY 1 cut(s) 268
EcoT14I CCWWGG 3 cut(s) 6, 220, 271
ErhI CCWWGG 3 cut(s) 6, 220, 271
FaiI YATR 3 cut(s) 32, 212, 309
Fnu4HI GCNGC 2 cut(s) 121, 300
FokI GGATG 1 cut(s) 349
Fsp4HI GCNGC 2 cut(s) 121, 300
FspBI CTAG 3 cut(s) 47, 69, 317
GluI GCNGC 2 cut(s) 121, 300
HaeIII GGCC 1 cut(s) 270
Hpy166II GTNNAC 1 cut(s) 262
Hpy8I GTNNAC 1 cut(s) 262
Hpy99I CGWCG 1 cut(s) 134
HpyAV CCTTC 1 cut(s) 28
HpyCH4III ACNGT 2 cut(s) 91, 134
HpyCH4V TGCA 4 cut(s) 56, 149, 214, 262
Kzo9I GATC 1 cut(s) 229
LguI GCTCTTC 1 cut(s) 306
LmnI GCTCC 1 cut(s) 65
Lsp1109I GCAGC 1 cut(s) 286
LweI GCATC 1 cut(s) 136
MaeI CTAG 3 cut(s) 47, 69, 317
MalI GATC 1 cut(s) 231
MbiI CCGCTC 1 cut(s) 120
MboI GATC 1 cut(s) 229
MboII GAAGA 3 cut(s) 179, 182, 323
MflI RGATCY 1 cut(s) 229
MhlI GDGCHC 2 cut(s) 114, 264
MluCI AATT 2 cut(s) 156, 181
MnlI CCTC 1 cut(s) 231
MslI CAYNNNNRTG 1 cut(s) 92
MspA1I CMGCKG 1 cut(s) 105
NdeII GATC 1 cut(s) 229
NlaIV GGNNCC 1 cut(s) 231
OliI CACNNNNGTG 1 cut(s) 92
PciSI GCTCTTC 1 cut(s) 306
PflMI CCANNNNNTGG 1 cut(s) 226
PkrI GCNGC 2 cut(s) 122, 301
PspN4I GGNNCC 1 cut(s) 231
PspPI GGNCC 1 cut(s) 268
PsuI RGATCY 1 cut(s) 229
RseI CAYNNNNRTG 1 cut(s) 92
SapI GCTCTTC 1 cut(s) 306
SatI GCNGC 2 cut(s) 121, 300
Sau3AI GATC 1 cut(s) 229
Sau96I GGNCC 1 cut(s) 268
SduI GDGCHC 2 cut(s) 114, 264
SetI ASST 4 cut(s) 70, 226, 286, 318
SfaNI GCATC 1 cut(s) 136
SmiMI CAYNNNNRTG 1 cut(s) 92
SmlI CTYRAG 1 cut(s) 115
SmoI CTYRAG 1 cut(s) 115
Sse9I AATT 2 cut(s) 156, 181
SsiI CCGC 4 cut(s) 17, 85, 105, 120
SspI AATATT 1 cut(s) 293
SspMI CTAG 3 cut(s) 47, 69, 317
StyI CCWWGG 3 cut(s) 6, 220, 271
TaaI ACNGT 2 cut(s) 91, 134
TaqI TCGA 1 cut(s) 349
TasI AATT 2 cut(s) 156, 181
TauI GCSGC 1 cut(s) 123
TscAI CASTG 1 cut(s) 94
TseI GCWGC 1 cut(s) 299
TspDTI ATGAA 2 cut(s) 47, 324
TspRI CASTG 1 cut(s) 94
Van91I CCANNNNNTGG 1 cut(s) 226
VneI GTGCAC 1 cut(s) 260
XapI RAATTY 1 cut(s) 181
XspI CTAG 3 cut(s) 47, 69, 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.