The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G31300 AT4G31300 AT4G31300 |
| fragaria_vesca | FvH4_2g36480 |
| malus_domestica | MD08G1124600.v1.1 MD13G1234400.v1.1 MD15G1103300.v1.1 MD16G1239000.v1.1 |
| prunus_persica | Prupe.1G065200_v2.0.a1 Prupe.1G456200_v2.0.a1 Prupe.1G456200_v2.0.a1 |
| pyrus_communis | pycom08g10330 pycom13g20630 pycom16g19990 |
| rosa_chinensis | RchiOBHm_Chr2g0148551 RchiOBHm_Chr6g0305401 |
| rosa_laevigata | RLG00000008279 RLG00000010894 RLG00000027046 |
| rosa_multiflora | Rmu_sc0002782.1_g000018 Rmu_sc0012564.1_g000002 |
| rosa_roxburghii | Rroxscaffold_1G00015230 Rroxscaffold_7G00162840 |
| rosa_rugosa | Rorug06G0340100 |
| rosa_samantha | Rh2CG224200 Rh3AG033400 Rh3BG033700 Rh3DG033400 Rh5CG280300 Rh5CG513800 Rh6AG452000 Rh6BG449700 Rh6CG465900 Rh6DG452600 |
| rosa_wichuraiana | Rw6G039380 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 47, 92 |
| AccI | GTMKAC | 1 cut(s) | 171 |
| AccIII | TCCGGA | 1 cut(s) | 185 |
| AciI | CCGC | 1 cut(s) | 78 |
| AclWI | GGATC | 3 cut(s) | 12, 196, 442 |
| AcsI | RAATTY | 1 cut(s) | 661 |
| AcyI | GRCGYC | 2 cut(s) | 63, 81 |
| AfaI | GTAC | 1 cut(s) | 365 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 398 |
| AjnI | CCWGG | 1 cut(s) | 616 |
| AluBI | AGCT | 3 cut(s) | 157, 503, 649 |
| AluI | AGCT | 3 cut(s) | 157, 503, 649 |
| AlwI | GGATC | 3 cut(s) | 12, 196, 442 |
| Ama87I | CYCGRG | 1 cut(s) | 543 |
| Aor13HI | TCCGGA | 1 cut(s) | 185 |
| ApeKI | GCWGC | 2 cut(s) | 194, 284 |
| ApoI | RAATTY | 1 cut(s) | 661 |
| AseI | ATTAAT | 1 cut(s) | 585 |
| AspS9I | GGNCC | 1 cut(s) | 692 |
| AsuHPI | GGTGA | 4 cut(s) | 58, 529, 610, 632 |
| AvaI | CYCGRG | 1 cut(s) | 543 |
| AvaII | GGWCC | 1 cut(s) | 692 |
| BaeGI | GKGCMC | 1 cut(s) | 50 |
| BanI | GGYRCC | 2 cut(s) | 47, 92 |
| BbvI | GCAGC | 2 cut(s) | 181, 271 |
| BccI | CCATC | 3 cut(s) | 62, 246, 697 |
| BceAI | ACGGC | 1 cut(s) | 165 |
| BciT130I | CCWGG | 1 cut(s) | 618 |
| BclI | TGATCA | 1 cut(s) | 466 |
| BfaI | CTAG | 2 cut(s) | 555, 650 |
| BfmI | CTRYAG | 1 cut(s) | 195 |
| BisI | GCNGC | 3 cut(s) | 79, 195, 285 |
| BlsI | GCNGC | 3 cut(s) | 80, 196, 286 |
| Bme1390I | CCNGG | 1 cut(s) | 618 |
| Bme18I | GGWCC | 1 cut(s) | 692 |
| BmeT110I | CYCGRG | 1 cut(s) | 543 |
| BmgT120I | GGNCC | 1 cut(s) | 692 |
| BmiI | GGNNCC | 3 cut(s) | 49, 94, 442 |
| BmrFI | CCNGG | 1 cut(s) | 618 |
| BmsI | GCATC | 1 cut(s) | 146 |
| BpuEI | CTTGAG | 1 cut(s) | 189 |
| BsaHI | GRCGYC | 2 cut(s) | 63, 81 |
| BsaJI | CCNNGG | 2 cut(s) | 42, 88 |
| BsaWI | WCCGGW | 2 cut(s) | 185, 689 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 398 |
| Bse1I | ACTGG | 2 cut(s) | 118, 340 |
| BseAI | TCCGGA | 1 cut(s) | 185 |
| BseBI | CCWGG | 1 cut(s) | 618 |
| BseDI | CCNNGG | 2 cut(s) | 42, 88 |
| BseGI | GGATG | 2 cut(s) | 137, 686 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 398 |
| BseMII | CTCAG | 2 cut(s) | 167, 495 |
| BseNI | ACTGG | 2 cut(s) | 118, 340 |
| BseRI | GAGGAG | 1 cut(s) | 659 |
| BseSI | GKGCMC | 1 cut(s) | 50 |
| BseXI | GCAGC | 2 cut(s) | 181, 271 |
| BshNI | GGYRCC | 2 cut(s) | 47, 92 |
| BsiHKCI | CYCGRG | 1 cut(s) | 543 |
| BsiSI | CCGG | 2 cut(s) | 186, 690 |
| BslFI | GGGAC | 4 cut(s) | 273, 371, 415, 560 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 398 |
| BsmFI | GGGAC | 4 cut(s) | 273, 371, 415, 560 |
| BsmI | GAATGC | 1 cut(s) | 34 |
| BsoBI | CYCGRG | 1 cut(s) | 543 |
| Bsp1286I | GDGCHC | 1 cut(s) | 50 |
| Bsp13I | TCCGGA | 1 cut(s) | 185 |
| Bsp143I | GATC | 5 cut(s) | 4, 147, 188, 434, 466 |
| Bsp19I | CCATGG | 1 cut(s) | 42 |
| BspACI | CCGC | 1 cut(s) | 78 |
| BspCNI | CTCAG | 2 cut(s) | 166, 496 |
| BspEI | TCCGGA | 1 cut(s) | 185 |
| BspLI | GGNNCC | 3 cut(s) | 49, 94, 442 |
| BspMAI | CTGCAG | 1 cut(s) | 199 |
| BspPI | GGATC | 3 cut(s) | 12, 196, 442 |
| BspT107I | GGYRCC | 2 cut(s) | 47, 92 |
| BsrI | ACTGG | 2 cut(s) | 118, 340 |
| BssECI | CCNNGG | 2 cut(s) | 42, 88 |
| BssMI | GATC | 5 cut(s) | 4, 147, 188, 434, 466 |
| BssNI | GRCGYC | 2 cut(s) | 63, 81 |
| BssT1I | CCWWGG | 1 cut(s) | 42 |
| Bst2UI | CCWGG | 1 cut(s) | 618 |
| Bst4CI | ACNGT | 3 cut(s) | 274, 551, 577 |
| BstACI | GRCGYC | 2 cut(s) | 63, 81 |
| BstC8I | GCNNGC | 1 cut(s) | 267 |
| BstDEI | CTNAG | 2 cut(s) | 153, 504 |
| BstDSI | CCRYGG | 1 cut(s) | 42 |
| BstF5I | GGATG | 2 cut(s) | 137, 686 |
| BstKTI | GATC | 5 cut(s) | 7, 150, 191, 437, 469 |
| BstMBI | GATC | 5 cut(s) | 4, 147, 188, 434, 466 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 134, 262, 646 |
| BstNI | CCWGG | 1 cut(s) | 618 |
| BstSCI | CCNGG | 1 cut(s) | 616 |
| BstSFI | CTRYAG | 1 cut(s) | 195 |
| BstSLI | GKGCMC | 1 cut(s) | 50 |
| BstV1I | GCAGC | 2 cut(s) | 181, 271 |
| BstX2I | RGATCY | 1 cut(s) | 434 |
| BstYI | RGATCY | 1 cut(s) | 434 |
| BtgI | CCRYGG | 1 cut(s) | 42 |
| BtsCI | GGATG | 2 cut(s) | 137, 686 |
| BtsI | GCAGTG | 1 cut(s) | 665 |
| BtsIMutI | CAGTG | 3 cut(s) | 111, 159, 665 |
| Cac8I | GCNNGC | 1 cut(s) | 267 |
| Cfr13I | GGNCC | 1 cut(s) | 692 |
| CseI | GACGC | 2 cut(s) | 52, 70 |
| Csp6I | GTAC | 1 cut(s) | 364 |
| CviAII | CATG | 3 cut(s) | 43, 641, 700 |
| CviJI | RGCY | 8 cut(s) | 157, 194, 265, 339, 441, 459, 503, 649 |
| CviKI_1 | RGCY | 8 cut(s) | 157, 194, 265, 339, 441, 459, 503, 649 |
| CviQI | GTAC | 1 cut(s) | 364 |
| DdeI | CTNAG | 2 cut(s) | 153, 504 |
| DpnI | GATC | 5 cut(s) | 6, 149, 190, 436, 468 |
| DpnII | GATC | 5 cut(s) | 4, 147, 188, 434, 466 |
| Eco130I | CCWWGG | 1 cut(s) | 42 |
| Eco47I | GGWCC | 1 cut(s) | 692 |
| Eco88I | CYCGRG | 1 cut(s) | 543 |
| EcoRII | CCWGG | 1 cut(s) | 616 |
| EcoT14I | CCWWGG | 1 cut(s) | 42 |
| ErhI | CCWWGG | 1 cut(s) | 42 |
| FaeI | CATG | 3 cut(s) | 46, 644, 703 |
| FaqI | GGGAC | 4 cut(s) | 273, 371, 415, 560 |
| FatI | CATG | 3 cut(s) | 42, 640, 699 |
| FbaI | TGATCA | 1 cut(s) | 466 |
| FblI | GTMKAC | 1 cut(s) | 171 |
| Fnu4HI | GCNGC | 3 cut(s) | 79, 195, 285 |
| FokI | GGATG | 2 cut(s) | 124, 673 |
| Fsp4HI | GCNGC | 3 cut(s) | 79, 195, 285 |
| FspBI | CTAG | 2 cut(s) | 555, 650 |
| GluI | GCNGC | 3 cut(s) | 79, 195, 285 |
| HapII | CCGG | 2 cut(s) | 186, 690 |
| HgaI | GACGC | 2 cut(s) | 52, 70 |
| Hin1I | GRCGYC | 2 cut(s) | 63, 81 |
| Hin1II | CATG | 3 cut(s) | 46, 644, 703 |
| HinfI | GANTC | 3 cut(s) | 98, 130, 200 |
| HpaII | CCGG | 2 cut(s) | 186, 690 |
| HphI | GGTGA | 4 cut(s) | 58, 529, 610, 632 |
| Hpy166II | GTNNAC | 1 cut(s) | 172 |
| Hpy188I | TCNGA | 4 cut(s) | 142, 217, 573, 592 |
| Hpy188III | TCNNGA | 5 cut(s) | 102, 186, 470, 545, 695 |
| Hpy8I | GTNNAC | 1 cut(s) | 172 |
| Hpy99I | CGWCG | 1 cut(s) | 86 |
| HpyAV | CCTTC | 4 cut(s) | 472, 476, 514, 638 |
| HpyCH4III | ACNGT | 3 cut(s) | 274, 551, 577 |
| HpyCH4V | TGCA | 3 cut(s) | 197, 269, 287 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 134, 262, 646 |
| HpyF3I | CTNAG | 2 cut(s) | 153, 504 |
| Hsp92I | GRCGYC | 2 cut(s) | 63, 81 |
| Hsp92II | CATG | 3 cut(s) | 46, 644, 703 |
| Kpn2I | TCCGGA | 1 cut(s) | 185 |
| Ksp22I | TGATCA | 1 cut(s) | 466 |
| Kzo9I | GATC | 5 cut(s) | 4, 147, 188, 434, 466 |
| LmnI | GCTCC | 3 cut(s) | 412, 446, 646 |
| Lsp1109I | GCAGC | 2 cut(s) | 181, 271 |
| LweI | GCATC | 1 cut(s) | 146 |
| MaeI | CTAG | 2 cut(s) | 555, 650 |
| MaeIII | GTNAC | 4 cut(s) | 64, 598, 620, 706 |
| MalI | GATC | 5 cut(s) | 6, 149, 190, 436, 468 |
| MboI | GATC | 5 cut(s) | 4, 147, 188, 434, 466 |
| MflI | RGATCY | 1 cut(s) | 434 |
| MhlI | GDGCHC | 1 cut(s) | 50 |
| MluCI | AATT | 3 cut(s) | 405, 586, 661 |
| MnlI | CCTC | 8 cut(s) | 45, 98, 365, 392, 425, 490, 586, 637 |
| MroI | TCCGGA | 1 cut(s) | 185 |
| MseI | TTAA | 1 cut(s) | 585 |
| MspI | CCGG | 2 cut(s) | 186, 690 |
| MspR9I | CCNGG | 1 cut(s) | 618 |
| Mva1269I | GAATGC | 1 cut(s) | 34 |
| MvaI | CCWGG | 1 cut(s) | 618 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 134, 262, 646 |
| NcoI | CCATGG | 1 cut(s) | 42 |
| NdeII | GATC | 5 cut(s) | 4, 147, 188, 434, 466 |
| NlaIII | CATG | 3 cut(s) | 46, 644, 703 |
| NlaIV | GGNNCC | 3 cut(s) | 49, 94, 442 |
| NmuCI | GTSAC | 3 cut(s) | 64, 598, 620 |
| PctI | GAATGC | 1 cut(s) | 34 |
| PfeI | GAWTC | 3 cut(s) | 98, 130, 200 |
| PkrI | GCNGC | 3 cut(s) | 80, 196, 286 |
| PshBI | ATTAAT | 1 cut(s) | 585 |
| Psp6I | CCWGG | 1 cut(s) | 616 |
| PspGI | CCWGG | 1 cut(s) | 616 |
| PspN4I | GGNNCC | 3 cut(s) | 49, 94, 442 |
| PspPI | GGNCC | 1 cut(s) | 692 |
| PstI | CTGCAG | 1 cut(s) | 199 |
| PsuI | RGATCY | 1 cut(s) | 434 |
| RsaI | GTAC | 1 cut(s) | 365 |
| RsaNI | GTAC | 1 cut(s) | 364 |
| SaqAI | TTAA | 1 cut(s) | 585 |
| SatI | GCNGC | 3 cut(s) | 79, 195, 285 |
| Sau3AI | GATC | 5 cut(s) | 4, 147, 188, 434, 466 |
| Sau96I | GGNCC | 1 cut(s) | 692 |
| ScrFI | CCNGG | 1 cut(s) | 618 |
| SduI | GDGCHC | 1 cut(s) | 50 |
| SfaNI | GCATC | 1 cut(s) | 146 |
| SfcI | CTRYAG | 1 cut(s) | 195 |
| SinI | GGWCC | 1 cut(s) | 692 |
| SmlI | CTYRAG | 1 cut(s) | 204 |
| SmoI | CTYRAG | 1 cut(s) | 204 |
| Sse9I | AATT | 3 cut(s) | 405, 586, 661 |
| SsiI | CCGC | 1 cut(s) | 78 |
| SspMI | CTAG | 2 cut(s) | 555, 650 |
| StyD4I | CCNGG | 1 cut(s) | 616 |
| StyI | CCWWGG | 1 cut(s) | 42 |
| TaaI | ACNGT | 3 cut(s) | 274, 551, 577 |
| TaqI | TCGA | 1 cut(s) | 103 |
| TasI | AATT | 3 cut(s) | 405, 586, 661 |
| TatI | WGTACW | 1 cut(s) | 363 |
| TauI | GCSGC | 1 cut(s) | 81 |
| TfiI | GAWTC | 3 cut(s) | 98, 130, 200 |
| Tru1I | TTAA | 1 cut(s) | 585 |
| Tru9I | TTAA | 1 cut(s) | 585 |
| TscAI | CASTG | 3 cut(s) | 118, 166, 672 |
| TseFI | GTSAC | 3 cut(s) | 64, 598, 620 |
| TseI | GCWGC | 2 cut(s) | 194, 284 |
| Tsp45I | GTSAC | 3 cut(s) | 64, 598, 620 |
| TspGWI | ACGGA | 1 cut(s) | 215 |
| TspRI | CASTG | 3 cut(s) | 118, 166, 672 |
| VpaK11BI | GGWCC | 1 cut(s) | 692 |
| VspI | ATTAAT | 1 cut(s) | 585 |
| XapI | RAATTY | 1 cut(s) | 661 |
| XmiI | GTMKAC | 1 cut(s) | 171 |
| XspI | CTAG | 2 cut(s) | 555, 650 |