Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012564.1

Orthogroup ID

OG0003666

Physical Location & Seq

Genomic Coordinates Reverse (-)

1002 .. 3091

Gene Structure 2090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012564.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

atgtctcacccatcaatggacgatatgaacctcaacgcccctcactccatgggcaccaccatcatcggcgtcacctacgacggcggcgtcgtcctcggcgctgactcccgcacctccactggtgtctatgttgcgaatcggtgctcggataaaatcactcagctcacggataatgtctacgtctgtcgctctggatcggctgcagattctcaggttgtttccgactatgtgaggcactttcttcatcagcacaccattcagctagggcagcctgctactgtcaaagttgctgctaatctcatcaggctactgtcctatggcaacaagaatatgttgcaaactgggttgattgttggaggctgggacaagtacgaagggggaaagatttacggagttcctcttggcggcacagtaattgaggcgccatttgccattggaggttctggctccagttacttgtatggattctttgatcaagcatggagagaaggaatgaccaaggacgaagcggagaagttggttgtgaaggcagtttccctagccattgcacgagatggagccagtggtggtgttgtccgcactgttgtgattaattctgagggagttaaaagaaatttctacgctggcgacacactgccactgtggcacgaggagttggagccccagaattctctcctggacatcttggctgtaggcggtgatggccctgcccctatgaacgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005839 GO:0019774 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome

Protein Analysis

241

Amino Acids

25.67

Weight (kDa)

5.33

Isoelectric Point (pI)

34.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31300 AT4G31300 AT4G31300
fragaria_vesca	FvH4_2g36480
malus_domestica	MD08G1124600.v1.1 MD13G1234400.v1.1 MD15G1103300.v1.1 MD16G1239000.v1.1
prunus_persica	Prupe.1G065200_v2.0.a1 Prupe.1G456200_v2.0.a1 Prupe.1G456200_v2.0.a1
pyrus_communis	pycom08g10330 pycom13g20630 pycom16g19990
rosa_chinensis	RchiOBHm_Chr2g0148551 RchiOBHm_Chr6g0305401
rosa_laevigata	RLG00000008279 RLG00000010894 RLG00000027046
rosa_multiflora	Rmu_sc0002782.1_g000018 Rmu_sc0012564.1_g000002
rosa_roxburghii	Rroxscaffold_1G00015230 Rroxscaffold_7G00162840
rosa_rugosa	Rorug06G0340100
rosa_samantha	Rh2CG224200 Rh3AG033400 Rh3BG033700 Rh3DG033400 Rh5CG280300 Rh5CG513800 Rh6AG452000 Rh6BG449700 Rh6CG465900 Rh6DG452600
rosa_wichuraiana	Rw6G039380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	86
AccB1I	GGYRCC	2 cut(s)	53, 421
AccI	GTMKAC	1 cut(s)	177
AciI	CCGC	6 cut(s)	84, 109, 405, 509, 577, 696
AclWI	GGATC	1 cut(s)	202
AcsI	RAATTY	2 cut(s)	613, 667
AcyI	GRCGYC	3 cut(s)	69, 87, 422
AfaI	GTAC	1 cut(s)	371
AfiI	CCNNNNNNNGG	2 cut(s)	16, 404
AjnI	CCWGG	1 cut(s)	675
AleI	CACNNNNGTG	1 cut(s)	584
AluBI	AGCT	2 cut(s)	163, 262
AluI	AGCT	2 cut(s)	163, 262
Alw21I	GWGCWC	1 cut(s)	146
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	202
AoxI	GGCC	1 cut(s)	703
ApeKI	GCWGC	3 cut(s)	200, 268, 290
ApoI	RAATTY	2 cut(s)	613, 667
AseI	ATTAAT	1 cut(s)	591
AspLEI	GCGC	2 cut(s)	101, 424
AspS9I	GGNCC	1 cut(s)	704
AsuHPI	GGTGA	2 cut(s)	64, 710
BaeGI	GKGCMC	1 cut(s)	56
BanI	GGYRCC	2 cut(s)	53, 421
BanII	GRGCYC	1 cut(s)	663
BauI	CACGAG	2 cut(s)	549, 647
Bbv12I	GWGCWC	1 cut(s)	146
BbvI	GCAGC	3 cut(s)	187, 277, 280
BccI	CCATC	4 cut(s)	19, 68, 548, 695
BceAI	ACGGC	1 cut(s)	97
BciT130I	CCWGG	1 cut(s)	677
BclI	TGATCA	1 cut(s)	472
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	2 cut(s)	263, 539
BfmI	CTRYAG	2 cut(s)	201, 690
BfoI	RGCGCY	2 cut(s)	102, 425
BglI	GCCNNNNNGGC	1 cut(s)	643
BisI	GCNGC	5 cut(s)	85, 201, 269, 291, 406
BlsI	GCNGC	5 cut(s)	86, 202, 270, 292, 407
Bme1390I	CCNGG	1 cut(s)	677
BmgT120I	GGNCC	1 cut(s)	704
BmiI	GGNNCC	5 cut(s)	55, 423, 448, 559, 660
BmrFI	CCNGG	1 cut(s)	677
BmrI	ACTGGG	1 cut(s)	351
BmuI	ACTGGG	1 cut(s)	351
BpmI	CTGGAG	1 cut(s)	433
BsaHI	GRCGYC	3 cut(s)	69, 87, 422
BsaJI	CCNNGG	3 cut(s)	48, 94, 498
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 404
Bse1I	ACTGG	4 cut(s)	124, 346, 450, 561
Bse3DI	GCAATG	1 cut(s)	543
BseBI	CCWGG	1 cut(s)	677
BseDI	CCNNGG	3 cut(s)	48, 94, 498
BseLI	CCNNNNNNNGG	2 cut(s)	16, 404
BseMI	GCAATG	1 cut(s)	543
BseMII	CTCAG	3 cut(s)	173, 224, 588
BseNI	ACTGG	4 cut(s)	124, 346, 450, 561
BseRI	GAGGAG	1 cut(s)	665
BseSI	GKGCMC	1 cut(s)	56
BseXI	GCAGC	3 cut(s)	187, 277, 280
BseYI	CCCAGC	1 cut(s)	360
BshFI	GGCC	1 cut(s)	705
BshNI	GGYRCC	2 cut(s)	53, 421
BsiHKAI	GWGCWC	1 cut(s)	146
BslFI	GGGAC	1 cut(s)	377
BslI	CCNNNNNNNGG	2 cut(s)	16, 404
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	1 cut(s)	377
BsnI	GGCC	1 cut(s)	705
Bsp1286I	GDGCHC	3 cut(s)	56, 146, 663
Bsp143I	GATC	2 cut(s)	194, 472
Bsp19I	CCATGG	1 cut(s)	48
BspACI	CCGC	6 cut(s)	84, 109, 405, 509, 577, 696
BspANI	GGCC	1 cut(s)	705
BspCNI	CTCAG	3 cut(s)	172, 223, 589
BspLI	GGNNCC	5 cut(s)	55, 423, 448, 559, 660
BspMAI	CTGCAG	1 cut(s)	205
BspPI	GGATC	1 cut(s)	202
BspT107I	GGYRCC	2 cut(s)	53, 421
BsrDI	GCAATG	1 cut(s)	543
BsrI	ACTGG	4 cut(s)	124, 346, 450, 561
BssECI	CCNNGG	3 cut(s)	48, 94, 498
BssMI	GATC	2 cut(s)	194, 472
BssNI	GRCGYC	3 cut(s)	69, 87, 422
BssSI	CACGAG	2 cut(s)	549, 647
BssT1I	CCWWGG	2 cut(s)	48, 498
Bst2BI	CACGAG	2 cut(s)	549, 647
Bst2UI	CCWGG	1 cut(s)	677
Bst4CI	ACNGT	5 cut(s)	280, 312, 412, 583, 642
BstACI	GRCGYC	3 cut(s)	69, 87, 422
BstC8I	GCNNGC	2 cut(s)	273, 625
BstDEI	CTNAG	3 cut(s)	159, 210, 597
BstDSI	CCRYGG	1 cut(s)	48
BstH2I	RGCGCY	2 cut(s)	102, 425
BstHHI	GCGC	2 cut(s)	101, 424
BstKTI	GATC	2 cut(s)	197, 475
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	2 cut(s)	194, 472
BstMWI	GCNNNNNNNGC	4 cut(s)	268, 428, 643, 702
BstNI	CCWGG	1 cut(s)	677
BstSCI	CCNGG	1 cut(s)	675
BstSFI	CTRYAG	2 cut(s)	201, 690
BstSLI	GKGCMC	1 cut(s)	56
BstV1I	GCAGC	3 cut(s)	187, 277, 280
BsuRI	GGCC	1 cut(s)	705
BtgI	CCRYGG	1 cut(s)	48
BtsI	GCAGTG	1 cut(s)	632
BtsIMutI	CAGTG	5 cut(s)	117, 568, 579, 632, 638
Cac8I	GCNNGC	2 cut(s)	273, 625
CfoI	GCGC	2 cut(s)	101, 424
Cfr13I	GGNCC	1 cut(s)	704
CseI	GACGC	2 cut(s)	58, 76
Csp6I	GTAC	1 cut(s)	370
CviAII	CATG	2 cut(s)	49, 480
CviQI	GTAC	1 cut(s)	370
DdeI	CTNAG	3 cut(s)	159, 210, 597
DinI	GGCGCC	1 cut(s)	423
DpnI	GATC	2 cut(s)	196, 474
DpnII	GATC	2 cut(s)	194, 472
DrdI	GACNNNNNNGTC	1 cut(s)	86
DseDI	GACNNNNNNGTC	1 cut(s)	86
Eco130I	CCWWGG	2 cut(s)	48, 498
Eco24I	GRGCYC	1 cut(s)	663
EcoRI	GAATTC	1 cut(s)	667
EcoRII	CCWGG	1 cut(s)	675
EcoT14I	CCWWGG	2 cut(s)	48, 498
EcoT38I	GRGCYC	1 cut(s)	663
EgeI	GGCGCC	1 cut(s)	423
EheI	GGCGCC	1 cut(s)	423
ErhI	CCWWGG	2 cut(s)	48, 498
FaeI	CATG	2 cut(s)	52, 483
FaiI	YATR	9 cut(s)	26, 50, 129, 228, 318, 332, 462, 481, 716
FaqI	GGGAC	1 cut(s)	377
FatI	CATG	2 cut(s)	48, 479
FauI	CCCGC	1 cut(s)	116
FbaI	TGATCA	1 cut(s)	472
FblI	GTMKAC	1 cut(s)	177
Fnu4HI	GCNGC	5 cut(s)	85, 201, 269, 291, 406
FriOI	GRGCYC	1 cut(s)	663
Fsp4HI	GCNGC	5 cut(s)	85, 201, 269, 291, 406
FspBI	CTAG	2 cut(s)	263, 539
GlaI	GCGC	2 cut(s)	100, 423
GluI	GCNGC	5 cut(s)	85, 201, 269, 291, 406
GsaI	CCCAGC	1 cut(s)	364
GsuI	CTGGAG	1 cut(s)	433
HaeII	RGCGCY	2 cut(s)	102, 425
HaeIII	GGCC	1 cut(s)	705
HgaI	GACGC	2 cut(s)	58, 76
HhaI	GCGC	2 cut(s)	101, 424
Hin1I	GRCGYC	3 cut(s)	69, 87, 422
Hin1II	CATG	2 cut(s)	52, 483
Hin6I	GCGC	2 cut(s)	99, 422
HinP1I	GCGC	2 cut(s)	99, 422
HinfI	GANTC	4 cut(s)	104, 136, 206, 465
HphI	GGTGA	2 cut(s)	64, 710
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	3 cut(s)	148, 223, 598
Hpy188III	TCNNGA	1 cut(s)	192
Hpy8I	GTNNAC	1 cut(s)	178
Hpy99I	CGWCG	2 cut(s)	83, 92
HpyAV	CCTTC	3 cut(s)	368, 482, 520
HpyCH4III	ACNGT	5 cut(s)	280, 312, 412, 583, 642
HpyCH4IV	ACGT	1 cut(s)	180
HpyCH4V	TGCA	3 cut(s)	203, 337, 548
HpyF10VI	GCNNNNNNNGC	4 cut(s)	268, 428, 643, 702
HpyF3I	CTNAG	3 cut(s)	159, 210, 597
HpySE526I	ACGT	1 cut(s)	180
Hsp92I	GRCGYC	3 cut(s)	69, 87, 422
Hsp92II	CATG	2 cut(s)	52, 483
HspAI	GCGC	2 cut(s)	99, 422
KasI	GGCGCC	1 cut(s)	421
Ksp22I	TGATCA	1 cut(s)	472
Kzo9I	GATC	2 cut(s)	194, 472
LmnI	GCTCC	3 cut(s)	452, 557, 658
Lsp1109I	GCAGC	3 cut(s)	187, 277, 280
MaeI	CTAG	2 cut(s)	263, 539
MaeII	ACGT	1 cut(s)	180
MaeIII	GTNAC	2 cut(s)	70, 452
MalI	GATC	2 cut(s)	196, 474
MboI	GATC	2 cut(s)	194, 472
MboII	GAAGA	1 cut(s)	233
MhlI	GDGCHC	3 cut(s)	56, 146, 663
MluCI	AATT	4 cut(s)	414, 592, 613, 667
Mly113I	GGCGCC	1 cut(s)	422
MlyI	GAGTC	1 cut(s)	98
MmeI	TCCRAC	3 cut(s)	246, 334, 636
MseI	TTAA	2 cut(s)	591, 606
MslI	CAYNNNNRTG	1 cut(s)	584
MspR9I	CCNGG	1 cut(s)	677
MvaI	CCWGG	1 cut(s)	677
MwoI	GCNNNNNNNGC	4 cut(s)	268, 428, 643, 702
NarI	GGCGCC	1 cut(s)	422
NcoI	CCATGG	1 cut(s)	48
NdeII	GATC	2 cut(s)	194, 472
NlaIII	CATG	2 cut(s)	52, 483
NlaIV	GGNNCC	5 cut(s)	55, 423, 448, 559, 660
NmeAIII	GCCGAG	1 cut(s)	75
NmuCI	GTSAC	1 cut(s)	70
OliI	CACNNNNGTG	1 cut(s)	584
PcsI	WCGNNNNNNNCGW	2 cut(s)	84, 87
PfeI	GAWTC	3 cut(s)	136, 206, 465
PfoI	TCCNGGA	1 cut(s)	675
PkrI	GCNGC	5 cut(s)	86, 202, 270, 292, 407
PleI	GAGTC	1 cut(s)	98
PluTI	GGCGCC	1 cut(s)	425
PpsI	GAGTC	1 cut(s)	98
PshBI	ATTAAT	1 cut(s)	591
Psp6I	CCWGG	1 cut(s)	675
PspFI	CCCAGC	1 cut(s)	360
PspGI	CCWGG	1 cut(s)	675
PspN4I	GGNNCC	5 cut(s)	55, 423, 448, 559, 660
PspPI	GGNCC	1 cut(s)	704
PstI	CTGCAG	1 cut(s)	205
RsaI	GTAC	1 cut(s)	371
RsaNI	GTAC	1 cut(s)	370
RseI	CAYNNNNRTG	1 cut(s)	584
SaqAI	TTAA	2 cut(s)	591, 606
SatI	GCNGC	5 cut(s)	85, 201, 269, 291, 406
Sau3AI	GATC	2 cut(s)	194, 472
Sau96I	GGNCC	1 cut(s)	704
SchI	GAGTC	1 cut(s)	98
ScrFI	CCNGG	1 cut(s)	677
SduI	GDGCHC	3 cut(s)	56, 146, 663
SetI	ASST	8 cut(s)	33, 77, 116, 165, 183, 216, 264, 442
SfcI	CTRYAG	2 cut(s)	201, 690
SfoI	GGCGCC	1 cut(s)	423
SmiMI	CAYNNNNRTG	1 cut(s)	584
Sse9I	AATT	4 cut(s)	414, 592, 613, 667
SsiI	CCGC	6 cut(s)	84, 109, 405, 509, 577, 696
SspDI	GGCGCC	1 cut(s)	421
SspMI	CTAG	2 cut(s)	263, 539
StyD4I	CCNGG	1 cut(s)	675
StyI	CCWWGG	2 cut(s)	48, 498
TaaI	ACNGT	5 cut(s)	280, 312, 412, 583, 642
TaiI	ACGT	1 cut(s)	183
TasI	AATT	4 cut(s)	414, 592, 613, 667
TauI	GCSGC	2 cut(s)	87, 408
TfiI	GAWTC	3 cut(s)	136, 206, 465
Tru1I	TTAA	2 cut(s)	591, 606
Tru9I	TTAA	2 cut(s)	591, 606
TscAI	CASTG	5 cut(s)	124, 568, 586, 639, 645
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	3 cut(s)	200, 268, 290
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	2 cut(s)	41, 233
TspGWI	ACGGA	2 cut(s)	182, 405
TspRI	CASTG	5 cut(s)	124, 568, 586, 639, 645
VspI	ATTAAT	1 cut(s)	591
XapI	RAATTY	2 cut(s)	613, 667
XmiI	GTMKAC	1 cut(s)	177
XspI	CTAG	2 cut(s)	263, 539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.