Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002782.1

Orthogroup ID

OG0010238

Physical Location & Seq

Genomic Coordinates Forward (+)

60075 .. 61724

Gene Structure 1650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002782.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

atggcgaactctccgagcgtcgtccacaacgtgtttgtctacggcagcctgatggccgaggacgtctgtcgagtcctcttaaatcgagtccctcaatcctctaatgctaccctcaatggctatcataggtacagcatcaaaggacgtgtttatccggcgattctccccgtcgagaataaaaaagttaccggaaaggtgttgttaggcatcacagatcctgaattacatattttggatgaatttgaggatgttgagtatcagaggggcaccgttgaggtctctttgatggatagttctgagaacttgcgagttcatacttatgtttggagtgacaaaaatgacccaaacttgtatggagaatgggattttgaggtatggaaacaaaggcacatggaagattttatcaagatgacttctggtttcatggaagagctggagcaacctgaatcaaagcctagagttgcaacgtatgaatccttttatcagcaggatggctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GGACT

Protein Analysis

165

Amino Acids

19.1

Weight (kDa)

4.91

Isoelectric Point (pI)

45.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24390 AT2G24390 AT2G24390 AT4G31310 AT4G31310
fragaria_vesca	FvH4_2g36470
malus_domestica	MD08G1124500.v1.1 MD15G1103200.v1.1
prunus_persica	Prupe.1G456100_v2.0.a1 Prupe.1G456100_v2.0.a1
pyrus_communis	pycom08g10320 pycom15g09420
rosa_chinensis	RchiOBHm_Chr6g0305411
rosa_laevigata	RLG00000010893
rosa_multiflora	Rmu_sc0002782.1_g000019 Rmu_sc0012564.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162830
rosa_rugosa	Rorug06G0340100
rosa_samantha	Rh6AG452100 Rh6BG449600
rosa_wichuraiana	Rw6G039390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	66
AccB1I	GGYRCC	1 cut(s)	266
AccI	GTMKAC	1 cut(s)	39
AclWI	GGATC	1 cut(s)	209
AcoI	YGGCCR	1 cut(s)	54
AcsI	RAATTY	1 cut(s)	239
AcyI	GRCGYC	1 cut(s)	63
AdeI	CACNNNGTG	1 cut(s)	31
AfaI	GTAC	1 cut(s)	131
AflIII	ACRYGT	2 cut(s)	30, 145
AjiI	CACGTC	1 cut(s)	146
AluBI	AGCT	1 cut(s)	433
AluI	AGCT	1 cut(s)	433
Alw26I	GTCTC	1 cut(s)	283
AlwI	GGATC	1 cut(s)	209
AlwNI	CAGNNNCTG	1 cut(s)	218
AoxI	GGCC	1 cut(s)	54
ApeKI	GCWGC	1 cut(s)	45
ApoI	RAATTY	1 cut(s)	239
BaeGI	GKGCMC	1 cut(s)	269
BanI	GGYRCC	1 cut(s)	266
BbvI	GCAGC	1 cut(s)	57
BccI	CCATC	3 cut(s)	46, 280, 485
BceAI	ACGGC	1 cut(s)	58
BcoDI	GTCTC	1 cut(s)	283
BfaI	CTAG	2 cut(s)	456, 496
BisI	GCNGC	1 cut(s)	46
BlsI	GCNGC	1 cut(s)	47
BmgBI	CACGTC	1 cut(s)	146
BmiI	GGNNCC	1 cut(s)	268
BmsI	GCATC	2 cut(s)	144, 216
BoxI	GACNNNNGTC	1 cut(s)	66
BpmI	CTGGAG	1 cut(s)	455
BsaHI	GRCGYC	1 cut(s)	63
BsaI	GGTCTC	1 cut(s)	283
BsaJI	CCNNGG	1 cut(s)	57
BsaWI	WCCGGW	1 cut(s)	188
BseDI	CCNNGG	1 cut(s)	57
BseGI	GGATG	3 cut(s)	241, 253, 496
BseMII	CTCAG	1 cut(s)	288
BseSI	GKGCMC	1 cut(s)	269
BseXI	GCAGC	1 cut(s)	57
BshFI	GGCC	1 cut(s)	56
BshNI	GGYRCC	1 cut(s)	266
BsiSI	CCGG	2 cut(s)	155, 189
BslFI	GGGAC	1 cut(s)	74
BsmAI	GTCTC	1 cut(s)	283
BsmFI	GGGAC	1 cut(s)	74
BsnI	GGCC	1 cut(s)	56
Bso31I	GGTCTC	1 cut(s)	283
Bsp1286I	GDGCHC	1 cut(s)	269
Bsp143I	GATC	1 cut(s)	214
BspANI	GGCC	1 cut(s)	56
BspCNI	CTCAG	1 cut(s)	289
BspLI	GGNNCC	1 cut(s)	268
BspPI	GGATC	1 cut(s)	209
BspQI	GCTCTTC	1 cut(s)	423
BspT107I	GGYRCC	1 cut(s)	266
BspTNI	GGTCTC	1 cut(s)	283
BssECI	CCNNGG	1 cut(s)	57
BssMI	GATC	1 cut(s)	214
BssNI	GRCGYC	1 cut(s)	63
Bst4CI	ACNGT	1 cut(s)	271
Bst6I	CTCTTC	1 cut(s)	423
BstACI	GRCGYC	1 cut(s)	63
BstDEI	CTNAG	1 cut(s)	297
BstF5I	GGATG	3 cut(s)	241, 253, 496
BstKTI	GATC	1 cut(s)	217
BstMAI	GTCTC	1 cut(s)	283
BstMBI	GATC	1 cut(s)	214
BstPAI	GACNNNNGTC	1 cut(s)	66
BstSLI	GKGCMC	1 cut(s)	269
BstV1I	GCAGC	1 cut(s)	57
BstX2I	RGATCY	1 cut(s)	214
BstYI	RGATCY	1 cut(s)	214
BsuRI	GGCC	1 cut(s)	56
BtrI	CACGTC	1 cut(s)	146
BtsCI	GGATG	3 cut(s)	241, 253, 496
CaiI	CAGNNNCTG	1 cut(s)	218
CseI	GACGC	1 cut(s)	7
Csp6I	GTAC	1 cut(s)	130
CviAII	CATG	2 cut(s)	391, 424
CviJI	RGCY	6 cut(s)	48, 56, 120, 433, 454, 495
CviKI_1	RGCY	6 cut(s)	48, 56, 120, 433, 454, 495
CviQI	GTAC	1 cut(s)	130
DdeI	CTNAG	1 cut(s)	297
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
DraIII	CACNNNGTG	1 cut(s)	31
EaeI	YGGCCR	1 cut(s)	54
Eam1104I	CTCTTC	1 cut(s)	423
EarI	CTCTTC	1 cut(s)	423
Eco31I	GGTCTC	1 cut(s)	283
FaeI	CATG	2 cut(s)	394, 427
FaiI	YATR	9 cut(s)	126, 228, 315, 321, 354, 376, 392, 425, 471
FaqI	GGGAC	1 cut(s)	74
FatI	CATG	2 cut(s)	390, 423
FblI	GTMKAC	1 cut(s)	39
Fnu4HI	GCNGC	1 cut(s)	46
FokI	GGATG	2 cut(s)	248, 260
Fsp4HI	GCNGC	1 cut(s)	46
FspBI	CTAG	2 cut(s)	456, 496
GluI	GCNGC	1 cut(s)	46
GsuI	CTGGAG	1 cut(s)	455
HaeIII	GGCC	1 cut(s)	56
HapII	CCGG	2 cut(s)	155, 189
HgaI	GACGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	63
Hin1II	CATG	2 cut(s)	394, 427
HinfI	GANTC	5 cut(s)	72, 87, 160, 446, 473
HpaII	CCGG	2 cut(s)	155, 189
Hpy166II	GTNNAC	2 cut(s)	25, 40
Hpy188I	TCNGA	3 cut(s)	15, 261, 298
Hpy188III	TCNNGA	3 cut(s)	172, 218, 406
Hpy8I	GTNNAC	2 cut(s)	25, 40
Hpy99I	CGWCG	2 cut(s)	23, 173
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4IV	ACGT	4 cut(s)	30, 63, 145, 467
HpyCH4V	TGCA	1 cut(s)	464
HpyF3I	CTNAG	1 cut(s)	297
HpySE526I	ACGT	4 cut(s)	30, 63, 145, 467
Hsp92I	GRCGYC	1 cut(s)	63
Hsp92II	CATG	2 cut(s)	394, 427
Kzo9I	GATC	1 cut(s)	214
LguI	GCTCTTC	1 cut(s)	423
LmnI	GCTCC	1 cut(s)	436
LpnPI	CCDG	8 cut(s)	62, 168, 202, 231, 402, 419, 456, 473
Lsp1109I	GCAGC	1 cut(s)	57
LweI	GCATC	2 cut(s)	144, 216
MaeI	CTAG	2 cut(s)	456, 496
MaeII	ACGT	4 cut(s)	30, 63, 145, 467
MaeIII	GTNAC	2 cut(s)	184, 329
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MboII	GAAGA	2 cut(s)	407, 440
MflI	RGATCY	1 cut(s)	214
MhlI	GDGCHC	1 cut(s)	269
MluCI	AATT	2 cut(s)	221, 239
MlyI	GAGTC	2 cut(s)	81, 96
MnlI	CCTC	9 cut(s)	52, 86, 102, 109, 122, 238, 255, 268, 364
MseI	TTAA	1 cut(s)	80
MslI	CAYNNNNRTG	1 cut(s)	318
MspI	CCGG	2 cut(s)	155, 189
NdeII	GATC	1 cut(s)	214
NlaIII	CATG	2 cut(s)	394, 427
NlaIV	GGNNCC	1 cut(s)	268
NmeAIII	GCCGAG	1 cut(s)	82
NmuCI	GTSAC	1 cut(s)	329
PciSI	GCTCTTC	1 cut(s)	423
PcsI	WCGNNNNNNNCGW	1 cut(s)	27
PfeI	GAWTC	3 cut(s)	160, 446, 473
PkrI	GCNGC	1 cut(s)	47
PleI	GAGTC	2 cut(s)	80, 95
PpsI	GAGTC	2 cut(s)	80, 95
PshAI	GACNNNNGTC	1 cut(s)	66
PspN4I	GGNNCC	1 cut(s)	268
PstNI	CAGNNNCTG	1 cut(s)	218
PsuI	RGATCY	1 cut(s)	214
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
RseI	CAYNNNNRTG	1 cut(s)	318
SapI	GCTCTTC	1 cut(s)	423
SaqAI	TTAA	1 cut(s)	80
SatI	GCNGC	1 cut(s)	46
Sau3AI	GATC	1 cut(s)	214
SchI	GAGTC	2 cut(s)	81, 96
SduI	GDGCHC	1 cut(s)	269
SfaNI	GCATC	2 cut(s)	144, 216
SmiMI	CAYNNNNRTG	1 cut(s)	318
Sse9I	AATT	2 cut(s)	221, 239
SspMI	CTAG	2 cut(s)	456, 496
TaaI	ACNGT	1 cut(s)	271
TaiI	ACGT	4 cut(s)	33, 66, 148, 470
TaqI	TCGA	3 cut(s)	70, 85, 171
TasI	AATT	2 cut(s)	221, 239
TfiI	GAWTC	3 cut(s)	160, 446, 473
Tru1I	TTAA	1 cut(s)	80
Tru9I	TTAA	1 cut(s)	80
TseFI	GTSAC	1 cut(s)	329
TseI	GCWGC	1 cut(s)	45
Tsp45I	GTSAC	1 cut(s)	329
TspDTI	ATGAA	4 cut(s)	252, 302, 412, 486
XapI	RAATTY	1 cut(s)	239
XmiI	GTMKAC	1 cut(s)	39
XspI	CTAG	2 cut(s)	456, 496
ZraI	GACGTC	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.