RLG00000010893

AIG2-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0010238
Physical Location & Seq
Reverse (-)
5116005 .. 5117613
1609 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010893

Sequence Viewer

Length: 498 bp
ATGGCGAACTCTCCGAGCGCCGTCCACAACGTGTTTGTCTACGGCAGCCTGATGGCCGAGGACGTCTGTCGAGTCCTCTTAAATCGAGTCCCTCAATCCTCTAATGCTACCCTCAATGGCTATCATAGGTACAGCATCAAAGGACGTGTTTATCCGGCGATTCTCCCCGTCGAGAATAAAAAAGTTACCGGAAAGGTGTTGTTAGGCATCACAGATCCTGAATTACATATTTTGGATGAATTTGAGGATGTCGAGTATCAGAGGGGCACTGTTGAGGTCTCTTTGATGGATAGTTCTGAGAACTTACGAGTTCATACTTATGTTTGGAGTGACAAAAATGACCCAAACTTGTATGGAGAATGGGATTTTGAGGTATGGAAAGAAAGGCACATGGAAGATTTTATCAAGATGACTTCTGGTTTCATGGAAGAGCTGGAGCAACCTGAATCAAAGCCTAGAGTTGCAACATATGAATCCTTTTATCAGCAGGATGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GGACT

Protein Analysis

166

Amino Acids

19.07

Weight (kDa)

4.84

Isoelectric Point (pI)

44.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GGACT PF06094 11 - 122 1.6e-25 Gamma-glutamyl cyclotransferase, AIG2-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 66
AccI GTMKAC 1 cut(s) 39
AclWI GGATC 1 cut(s) 209
AcoI YGGCCR 1 cut(s) 54
AcsI RAATTY 1 cut(s) 239
AcyI GRCGYC 1 cut(s) 63
AdeI CACNNNGTG 1 cut(s) 31
AfaI GTAC 1 cut(s) 131
AflIII ACRYGT 2 cut(s) 30, 145
AjiI CACGTC 1 cut(s) 146
AluBI AGCT 1 cut(s) 433
AluI AGCT 1 cut(s) 433
Alw26I GTCTC 1 cut(s) 283
AlwI GGATC 1 cut(s) 209
AlwNI CAGNNNCTG 1 cut(s) 218
AoxI GGCC 1 cut(s) 54
ApeKI GCWGC 1 cut(s) 45
ApoI RAATTY 1 cut(s) 239
AspLEI GCGC 1 cut(s) 20
BaeGI GKGCMC 1 cut(s) 269
BbvI GCAGC 1 cut(s) 57
BccI CCATC 3 cut(s) 46, 280, 485
BceAI ACGGC 2 cut(s) 5, 58
BcoDI GTCTC 1 cut(s) 283
BfaI CTAG 2 cut(s) 456, 496
BfoI RGCGCY 1 cut(s) 21
BisI GCNGC 1 cut(s) 46
BlsI GCNGC 1 cut(s) 47
BmgBI CACGTC 1 cut(s) 146
BmsI GCATC 2 cut(s) 144, 216
BoxI GACNNNNGTC 1 cut(s) 66
BpmI CTGGAG 1 cut(s) 455
BsaHI GRCGYC 1 cut(s) 63
BsaI GGTCTC 1 cut(s) 283
BsaJI CCNNGG 1 cut(s) 57
BsaWI WCCGGW 1 cut(s) 188
BseDI CCNNGG 1 cut(s) 57
BseGI GGATG 3 cut(s) 241, 253, 496
BseMII CTCAG 1 cut(s) 288
BseSI GKGCMC 1 cut(s) 269
BseXI GCAGC 1 cut(s) 57
BshFI GGCC 1 cut(s) 56
BsiSI CCGG 2 cut(s) 155, 189
BslFI GGGAC 1 cut(s) 74
BsmAI GTCTC 1 cut(s) 283
BsmFI GGGAC 1 cut(s) 74
BsnI GGCC 1 cut(s) 56
Bso31I GGTCTC 1 cut(s) 283
Bsp1286I GDGCHC 1 cut(s) 269
Bsp143I GATC 1 cut(s) 214
BspANI GGCC 1 cut(s) 56
BspCNI CTCAG 1 cut(s) 289
BspPI GGATC 1 cut(s) 209
BspQI GCTCTTC 1 cut(s) 423
BspTNI GGTCTC 1 cut(s) 283
BssECI CCNNGG 1 cut(s) 57
BssMI GATC 1 cut(s) 214
BssNI GRCGYC 1 cut(s) 63
Bst4CI ACNGT 1 cut(s) 271
Bst6I CTCTTC 1 cut(s) 423
BstACI GRCGYC 1 cut(s) 63
BstDEI CTNAG 1 cut(s) 297
BstF5I GGATG 3 cut(s) 241, 253, 496
BstH2I RGCGCY 1 cut(s) 21
BstHHI GCGC 1 cut(s) 20
BstKTI GATC 1 cut(s) 217
BstMAI GTCTC 1 cut(s) 283
BstMBI GATC 1 cut(s) 214
BstPAI GACNNNNGTC 1 cut(s) 66
BstSLI GKGCMC 1 cut(s) 269
BstV1I GCAGC 1 cut(s) 57
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
BsuRI GGCC 1 cut(s) 56
BtrI CACGTC 1 cut(s) 146
BtsCI GGATG 3 cut(s) 241, 253, 496
BtsIMutI CAGTG 1 cut(s) 267
CaiI CAGNNNCTG 1 cut(s) 218
CfoI GCGC 1 cut(s) 20
Csp6I GTAC 1 cut(s) 130
CviAII CATG 2 cut(s) 391, 424
CviJI RGCY 6 cut(s) 48, 56, 120, 433, 454, 495
CviKI_1 RGCY 6 cut(s) 48, 56, 120, 433, 454, 495
CviQI GTAC 1 cut(s) 130
DdeI CTNAG 1 cut(s) 297
DpnI GATC 1 cut(s) 216
DpnII GATC 1 cut(s) 214
DraIII CACNNNGTG 1 cut(s) 31
EaeI YGGCCR 1 cut(s) 54
Eam1104I CTCTTC 1 cut(s) 423
EarI CTCTTC 1 cut(s) 423
Eco31I GGTCTC 1 cut(s) 283
FaeI CATG 2 cut(s) 394, 427
FaqI GGGAC 1 cut(s) 74
FatI CATG 2 cut(s) 390, 423
FauNDI CATATG 1 cut(s) 469
FblI GTMKAC 1 cut(s) 39
Fnu4HI GCNGC 1 cut(s) 46
FokI GGATG 2 cut(s) 248, 260
Fsp4HI GCNGC 1 cut(s) 46
FspBI CTAG 2 cut(s) 456, 496
GlaI GCGC 1 cut(s) 19
GluI GCNGC 1 cut(s) 46
GsuI CTGGAG 1 cut(s) 455
HaeII RGCGCY 1 cut(s) 21
HaeIII GGCC 1 cut(s) 56
HapII CCGG 2 cut(s) 155, 189
HhaI GCGC 1 cut(s) 20
Hin1I GRCGYC 1 cut(s) 63
Hin1II CATG 2 cut(s) 394, 427
Hin6I GCGC 1 cut(s) 18
HinP1I GCGC 1 cut(s) 18
HinfI GANTC 5 cut(s) 72, 87, 160, 446, 473
HpaII CCGG 2 cut(s) 155, 189
Hpy166II GTNNAC 2 cut(s) 25, 40
Hpy188I TCNGA 3 cut(s) 15, 261, 298
Hpy188III TCNNGA 3 cut(s) 172, 218, 406
Hpy8I GTNNAC 2 cut(s) 25, 40
Hpy99I CGWCG 1 cut(s) 173
HpyCH4III ACNGT 1 cut(s) 271
HpyCH4IV ACGT 3 cut(s) 30, 63, 145
HpyCH4V TGCA 1 cut(s) 464
HpyF3I CTNAG 1 cut(s) 297
HpySE526I ACGT 3 cut(s) 30, 63, 145
Hsp92I GRCGYC 1 cut(s) 63
Hsp92II CATG 2 cut(s) 394, 427
HspAI GCGC 1 cut(s) 18
Kzo9I GATC 1 cut(s) 214
LguI GCTCTTC 1 cut(s) 423
LmnI GCTCC 1 cut(s) 436
LpnPI CCDG 8 cut(s) 62, 168, 202, 231, 402, 419, 456, 473
Lsp1109I GCAGC 1 cut(s) 57
LweI GCATC 2 cut(s) 144, 216
MaeI CTAG 2 cut(s) 456, 496
MaeII ACGT 3 cut(s) 30, 63, 145
MaeIII GTNAC 2 cut(s) 184, 329
MalI GATC 1 cut(s) 216
MboI GATC 1 cut(s) 214
MboII GAAGA 2 cut(s) 407, 440
MflI RGATCY 1 cut(s) 214
MhlI GDGCHC 1 cut(s) 269
MluCI AATT 2 cut(s) 221, 239
MlyI GAGTC 2 cut(s) 81, 96
MnlI CCTC 9 cut(s) 52, 86, 102, 109, 122, 238, 255, 268, 364
MseI TTAA 1 cut(s) 80
MslI CAYNNNNRTG 1 cut(s) 318
MspI CCGG 2 cut(s) 155, 189
NdeI CATATG 1 cut(s) 469
NdeII GATC 1 cut(s) 214
NlaIII CATG 2 cut(s) 394, 427
NmeAIII GCCGAG 1 cut(s) 82
NmuCI GTSAC 1 cut(s) 329
PciSI GCTCTTC 1 cut(s) 423
PfeI GAWTC 3 cut(s) 160, 446, 473
PkrI GCNGC 1 cut(s) 47
PleI GAGTC 2 cut(s) 80, 95
PpsI GAGTC 2 cut(s) 80, 95
PshAI GACNNNNGTC 1 cut(s) 66
PstNI CAGNNNCTG 1 cut(s) 218
PsuI RGATCY 1 cut(s) 214
RsaI GTAC 1 cut(s) 131
RsaNI GTAC 1 cut(s) 130
RseI CAYNNNNRTG 1 cut(s) 318
SapI GCTCTTC 1 cut(s) 423
SaqAI TTAA 1 cut(s) 80
SatI GCNGC 1 cut(s) 46
Sau3AI GATC 1 cut(s) 214
SchI GAGTC 2 cut(s) 81, 96
SduI GDGCHC 1 cut(s) 269
SetI ASST 9 cut(s) 33, 66, 131, 148, 198, 279, 375, 435, 445
SfaNI GCATC 2 cut(s) 144, 216
SmiMI CAYNNNNRTG 1 cut(s) 318
Sse9I AATT 2 cut(s) 221, 239
SspMI CTAG 2 cut(s) 456, 496
TaaI ACNGT 1 cut(s) 271
TaiI ACGT 3 cut(s) 33, 66, 148
TaqI TCGA 4 cut(s) 70, 85, 171, 252
TasI AATT 2 cut(s) 221, 239
TfiI GAWTC 3 cut(s) 160, 446, 473
Tru1I TTAA 1 cut(s) 80
Tru9I TTAA 1 cut(s) 80
TscAI CASTG 1 cut(s) 274
TseFI GTSAC 1 cut(s) 329
TseI GCWGC 1 cut(s) 45
Tsp45I GTSAC 1 cut(s) 329
TspDTI ATGAA 4 cut(s) 252, 302, 412, 486
TspRI CASTG 1 cut(s) 274
XapI RAATTY 1 cut(s) 239
XmiI GTMKAC 1 cut(s) 39
XspI CTAG 2 cut(s) 456, 496
ZraI GACGTC 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.