Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0010238

Physical Location & Seq

Genomic Coordinates Reverse (-)

8669766 .. 8671204

Gene Structure 1439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g10320.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGAGTGGTGGTGCGATGAGCTCAGTGGTGGCGAACGGTGGTGGTCAGTCGCATAGCCTTCACAAGGTGTTCGTGTACGGCAGCCTCATGGCGGAGGATGTCTGCCGAGTGTTATTGGAAATAACAGATCCTGAATTGCATATTTTAGATGAATTTGAGGATGTGGAGTATGAGAGGAGCTCTGTTGAGGTCTCCTTGATGGATAGTTCTGAGAGTTTTCTAGCTCAGGCTTATGTTTGGAGCAACAAAAATGATCCAAACTTGTATGGAGATTGGAATTTTGAGGAATGGAAACAATTACACATGAAAGATTTCGTCGAGATGACTTCCGGTTTTATGGAAGGGCTGGAGCTGCCTGAAGCAAAGCCGAGGGTTGCAACATACGAGTCCTTCTTTCAGCAGGATCGCGAGAATCCACCGGTGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GGACT

Protein Analysis

143

Amino Acids

16.12

Weight (kDa)

4.32

Isoelectric Point (pI)

51.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24390 AT2G24390 AT2G24390 AT4G31310 AT4G31310
fragaria_vesca	FvH4_2g36470
malus_domestica	MD08G1124500.v1.1 MD15G1103200.v1.1
prunus_persica	Prupe.1G456100_v2.0.a1 Prupe.1G456100_v2.0.a1
pyrus_communis	pycom08g10320 pycom15g09420
rosa_chinensis	RchiOBHm_Chr6g0305411
rosa_laevigata	RLG00000010893
rosa_multiflora	Rmu_sc0002782.1_g000019 Rmu_sc0012564.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162830
rosa_rugosa	Rorug06G0340100
rosa_samantha	Rh6AG452100 Rh6BG449600
rosa_wichuraiana	Rw6G039390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	408
AciI	CCGC	1 cut(s)	92
AclWI	GGATC	3 cut(s)	122, 248, 411
AcsI	RAATTY	2 cut(s)	152, 277
AcuI	CTGAAG	1 cut(s)	378
AdeI	CACNNNGTG	1 cut(s)	67
AfaI	GTAC	1 cut(s)	77
AfiI	CCNNNNNNNGG	2 cut(s)	64, 91
AgeI	ACCGGT	1 cut(s)	418
AluBI	AGCT	4 cut(s)	21, 180, 224, 352
AluI	AGCT	4 cut(s)	21, 180, 224, 352
Alw21I	GWGCWC	2 cut(s)	23, 182
Alw26I	GTCTC	1 cut(s)	196
AlwI	GGATC	3 cut(s)	122, 248, 411
AlwNI	CAGNNNCTG	1 cut(s)	131
ApeKI	GCWGC	2 cut(s)	81, 352
ApoI	RAATTY	2 cut(s)	152, 277
AsiGI	ACCGGT	1 cut(s)	418
Asp700I	GAANNNNTTC	1 cut(s)	311
BanII	GRGCYC	2 cut(s)	23, 182
Bbv12I	GWGCWC	2 cut(s)	23, 182
BbvI	GCAGC	2 cut(s)	93, 339
BccI	CCATC	1 cut(s)	193
BceAI	ACGGC	1 cut(s)	94
BcoDI	GTCTC	1 cut(s)	196
BfaI	CTAG	1 cut(s)	221
BisI	GCNGC	2 cut(s)	82, 353
BlsI	GCNGC	2 cut(s)	83, 354
BplI	GAGNNNNNCTC	2 cut(s)	164, 196
BpmI	CTGGAG	1 cut(s)	368
Bpu10I	CCTNAGC	1 cut(s)	225
BsaI	GGTCTC	1 cut(s)	196
BsaJI	CCNNGG	1 cut(s)	368
BsaWI	WCCGGW	2 cut(s)	329, 418
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 91
Bse118I	RCCGGY	1 cut(s)	418
BseDI	CCNNGG	1 cut(s)	368
BseGI	GGATG	2 cut(s)	103, 166
BseLI	CCNNNNNNNGG	2 cut(s)	64, 91
BseMII	CTCAG	3 cut(s)	36, 201, 239
BseRI	GAGGAG	1 cut(s)	190
BseXI	GCAGC	2 cut(s)	93, 339
Bsh1236I	CGCG	1 cut(s)	408
BshTI	ACCGGT	1 cut(s)	418
BsiHKAI	GWGCWC	2 cut(s)	23, 182
BsiSI	CCGG	2 cut(s)	330, 419
BslI	CCNNNNNNNGG	2 cut(s)	64, 91
BsmAI	GTCTC	1 cut(s)	196
Bso31I	GGTCTC	1 cut(s)	196
Bsp1286I	GDGCHC	2 cut(s)	23, 182
Bsp143I	GATC	3 cut(s)	127, 253, 403
Bsp68I	TCGCGA	1 cut(s)	408
BspACI	CCGC	1 cut(s)	92
BspCNI	CTCAG	3 cut(s)	35, 202, 238
BspFNI	CGCG	1 cut(s)	408
BspPI	GGATC	3 cut(s)	122, 248, 411
BspTNI	GGTCTC	1 cut(s)	196
BsrFI	RCCGGY	1 cut(s)	418
BssAI	RCCGGY	1 cut(s)	418
BssECI	CCNNGG	1 cut(s)	368
BssMI	GATC	3 cut(s)	127, 253, 403
Bst4CI	ACNGT	1 cut(s)	38
BstDEI	CTNAG	3 cut(s)	22, 210, 225
BstENI	CCTNNNNNAGG	1 cut(s)	62
BstF5I	GGATG	2 cut(s)	103, 166
BstFNI	CGCG	1 cut(s)	408
BstKTI	GATC	3 cut(s)	130, 256, 406
BstMAI	GTCTC	1 cut(s)	196
BstMBI	GATC	3 cut(s)	127, 253, 403
BstMWI	GCNNNNNNNGC	1 cut(s)	352
BstUI	CGCG	1 cut(s)	408
BstV1I	GCAGC	2 cut(s)	93, 339
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
BtgZI	GCGATG	1 cut(s)	29
BtsCI	GGATG	2 cut(s)	103, 166
BtsIMutI	CAGTG	1 cut(s)	30
BtuMI	TCGCGA	1 cut(s)	408
CaiI	CAGNNNCTG	1 cut(s)	131
Cfr10I	RCCGGY	1 cut(s)	418
Csp6I	GTAC	1 cut(s)	76
CspAI	ACCGGT	1 cut(s)	418
CviAII	CATG	2 cut(s)	88, 304
CviJI	RGCY	9 cut(s)	21, 57, 84, 180, 224, 230, 346, 352, 367
CviKI_1	RGCY	9 cut(s)	21, 57, 84, 180, 224, 230, 346, 352, 367
CviQI	GTAC	1 cut(s)	76
DdeI	CTNAG	3 cut(s)	22, 210, 225
DpnI	GATC	3 cut(s)	129, 255, 405
DpnII	GATC	3 cut(s)	127, 253, 403
DraIII	CACNNNGTG	1 cut(s)	67
EciI	GGCGGA	1 cut(s)	107
Ecl136II	GAGCTC	2 cut(s)	21, 180
Eco24I	GRGCYC	2 cut(s)	23, 182
Eco31I	GGTCTC	1 cut(s)	196
Eco53kI	GAGCTC	2 cut(s)	21, 180
Eco57I	CTGAAG	1 cut(s)	378
EcoICRI	GAGCTC	2 cut(s)	21, 180
EcoNI	CCTNNNNNAGG	1 cut(s)	62
EcoT38I	GRGCYC	2 cut(s)	23, 182
FaeI	CATG	2 cut(s)	91, 307
FatI	CATG	2 cut(s)	87, 303
Fnu4HI	GCNGC	2 cut(s)	82, 353
FokI	GGATG	2 cut(s)	110, 173
FriOI	GRGCYC	2 cut(s)	23, 182
Fsp4HI	GCNGC	2 cut(s)	82, 353
FspBI	CTAG	1 cut(s)	221
GluI	GCNGC	2 cut(s)	82, 353
GsuI	CTGGAG	1 cut(s)	368
HapII	CCGG	2 cut(s)	330, 419
Hin1II	CATG	2 cut(s)	91, 307
HinfI	GANTC	2 cut(s)	386, 412
HpaII	CCGG	2 cut(s)	330, 419
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188I	TCNGA	1 cut(s)	211
Hpy188III	TCNNGA	3 cut(s)	131, 319, 407
Hpy8I	GTNNAC	1 cut(s)	76
Hpy99I	CGWCG	1 cut(s)	320
HpyAV	CCTTC	3 cut(s)	68, 335, 400
HpyCH4III	ACNGT	1 cut(s)	38
HpyCH4V	TGCA	2 cut(s)	139, 377
HpyF10VI	GCNNNNNNNGC	1 cut(s)	352
HpyF3I	CTNAG	3 cut(s)	22, 210, 225
Hsp92II	CATG	2 cut(s)	91, 307
Kzo9I	GATC	3 cut(s)	127, 253, 403
LmnI	GCTCC	3 cut(s)	177, 240, 349
LpnPI	CCDG	6 cut(s)	144, 212, 332, 343, 369, 386
Lsp1109I	GCAGC	2 cut(s)	93, 339
MaeI	CTAG	1 cut(s)	221
MalI	GATC	3 cut(s)	129, 255, 405
MboI	GATC	3 cut(s)	127, 253, 403
MflI	RGATCY	1 cut(s)	127
MhlI	GDGCHC	2 cut(s)	23, 182
MluCI	AATT	4 cut(s)	134, 152, 277, 296
MlyI	GAGTC	1 cut(s)	395
MnlI	CCTC	7 cut(s)	88, 95, 151, 168, 181, 277, 363
MroXI	GAANNNNTTC	1 cut(s)	311
MspI	CCGG	2 cut(s)	330, 419
MvnI	CGCG	1 cut(s)	408
MwoI	GCNNNNNNNGC	1 cut(s)	352
NdeII	GATC	3 cut(s)	127, 253, 403
NlaIII	CATG	2 cut(s)	91, 307
NmeAIII	GCCGAG	2 cut(s)	131, 393
NruI	TCGCGA	1 cut(s)	408
PdmI	GAANNNNTTC	1 cut(s)	311
PfeI	GAWTC	1 cut(s)	412
PinAI	ACCGGT	1 cut(s)	418
PkrI	GCNGC	2 cut(s)	83, 354
PleI	GAGTC	1 cut(s)	394
PpsI	GAGTC	1 cut(s)	394
Psp124BI	GAGCTC	2 cut(s)	23, 182
PstNI	CAGNNNCTG	1 cut(s)	131
PsuI	RGATCY	1 cut(s)	127
RruI	TCGCGA	1 cut(s)	408
RsaI	GTAC	1 cut(s)	77
RsaNI	GTAC	1 cut(s)	76
SacI	GAGCTC	2 cut(s)	23, 182
SatI	GCNGC	2 cut(s)	82, 353
Sau3AI	GATC	3 cut(s)	127, 253, 403
SchI	GAGTC	1 cut(s)	395
SduI	GDGCHC	2 cut(s)	23, 182
SetI	ASST	6 cut(s)	23, 69, 182, 192, 226, 354
SgrAI	CRCCGGYG	1 cut(s)	418
Sse9I	AATT	4 cut(s)	134, 152, 277, 296
SsiI	CCGC	1 cut(s)	92
SspMI	CTAG	1 cut(s)	221
SstI	GAGCTC	2 cut(s)	23, 182
TaaI	ACNGT	1 cut(s)	38
TaqI	TCGA	1 cut(s)	318
TasI	AATT	4 cut(s)	134, 152, 277, 296
TfiI	GAWTC	1 cut(s)	412
TscAI	CASTG	1 cut(s)	30
TseI	GCWGC	2 cut(s)	81, 352
TspDTI	ATGAA	2 cut(s)	165, 320
TspRI	CASTG	1 cut(s)	30
XagI	CCTNNNNNAGG	1 cut(s)	62
XapI	RAATTY	2 cut(s)	152, 277
XmnI	GAANNNNTTC	1 cut(s)	311
XspI	CTAG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.