MD08G1124500.v1.1

AIG2-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0010238
Physical Location & Seq
Reverse (-)
11677758 .. 11679496
1739 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1124500.v1.1.491

Sequence Viewer

Length: 552 bp
ATGAGTGGTGGTGCGATAAGCTCAGTGGCGGCGAACGGTGGTGGTCAGTCGCAGAGCCTTCACAAGGTGTTCGTGTACGGCAGCCTCATGGCGGAGGATGTCTGCCGAGTCCTCTTGAATCGTGTCCCTCAATCCTCCCCTGCCATTCTCAATGGCTATGATAGGTATAACATCAAAGGAAGAGTTTATCCGGCGATTCTTCCCGTTGAGAATAAAAAAGTTACTGGCAAGGTGTTAGTGGAAATCACAGATCCTGAATTGCATATTTTAGATGAATTTGAGGATGTTGAGTATGAGAGGAGCTCTGTTGAGGTCTCCTTGATGGATAGTTCTGAGAGTTTGCTAGTTCAGGCTTATGTTTGGAGCAACAAAAATGATCCAAACTTGTATGGAGATTGGAATTTTGAGGAATGGAAACAATTACACATGAAAGATTTCGTCAAGATGACTTCGGGTTTTATGGAAGAGCTGGAGCTGCCTGAAGCAAAGCCGAGGGTTGCAACATACGAGTCGTTCTTTCAGCAGGATCGCGAGGATCCACCAGTGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GGACT

Protein Analysis

184

Amino Acids

20.69

Weight (kDa)

4.66

Isoelectric Point (pI)

62.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GGACT PF06094 23 - 134 1.9e-25 Gamma-glutamyl cyclotransferase, AIG2-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 531
AciI CCGC 2 cut(s) 29, 92
AclWI GGATC 5 cut(s) 245, 371, 530, 534, 543
AcsI RAATTY 2 cut(s) 275, 400
AcuI CTGAAG 1 cut(s) 501
AdeI CACNNNGTG 1 cut(s) 67
AfaI GTAC 1 cut(s) 77
AfiI CCNNNNNNNGG 2 cut(s) 64, 91
AgsI TTSAA 1 cut(s) 118
AluBI AGCT 4 cut(s) 21, 303, 469, 475
AluI AGCT 4 cut(s) 21, 303, 469, 475
Alw21I GWGCWC 1 cut(s) 305
Alw26I GTCTC 1 cut(s) 319
AlwI GGATC 5 cut(s) 245, 371, 530, 534, 543
AlwNI CAGNNNCTG 1 cut(s) 254
ApeKI GCWGC 2 cut(s) 81, 475
ApoI RAATTY 2 cut(s) 275, 400
Asp700I GAANNNNTTC 1 cut(s) 434
BamHI GGATCC 1 cut(s) 535
BanII GRGCYC 1 cut(s) 305
Bbv12I GWGCWC 1 cut(s) 305
BbvI GCAGC 2 cut(s) 93, 462
BccI CCATC 1 cut(s) 316
BceAI ACGGC 1 cut(s) 94
BcoDI GTCTC 1 cut(s) 319
BfaI CTAG 1 cut(s) 344
BisI GCNGC 3 cut(s) 30, 82, 476
BlsI GCNGC 3 cut(s) 31, 83, 477
BmiI GGNNCC 1 cut(s) 537
BplI GAGNNNNNCTC 2 cut(s) 287, 319
BpmI CTGGAG 1 cut(s) 491
BsaI GGTCTC 1 cut(s) 319
BsaJI CCNNGG 1 cut(s) 491
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 91
Bse1I ACTGG 2 cut(s) 229, 542
BseDI CCNNGG 1 cut(s) 491
BseGI GGATG 2 cut(s) 103, 289
BseLI CCNNNNNNNGG 2 cut(s) 64, 91
BseMII CTCAG 2 cut(s) 36, 324
BseNI ACTGG 2 cut(s) 229, 542
BseRI GAGGAG 1 cut(s) 313
BseXI GCAGC 2 cut(s) 93, 462
Bsh1236I CGCG 1 cut(s) 531
BsiHKAI GWGCWC 1 cut(s) 305
BsiSI CCGG 1 cut(s) 191
BslFI GGGAC 1 cut(s) 110
BslI CCNNNNNNNGG 2 cut(s) 64, 91
BsmAI GTCTC 1 cut(s) 319
BsmFI GGGAC 1 cut(s) 110
Bso31I GGTCTC 1 cut(s) 319
Bsp1286I GDGCHC 1 cut(s) 305
Bsp143I GATC 4 cut(s) 250, 376, 526, 535
Bsp68I TCGCGA 1 cut(s) 531
BspACI CCGC 2 cut(s) 29, 92
BspCNI CTCAG 2 cut(s) 35, 325
BspFNI CGCG 1 cut(s) 531
BspLI GGNNCC 1 cut(s) 537
BspPI GGATC 5 cut(s) 245, 371, 530, 534, 543
BspQI GCTCTTC 1 cut(s) 459
BspTNI GGTCTC 1 cut(s) 319
BsrI ACTGG 2 cut(s) 229, 542
BssECI CCNNGG 1 cut(s) 491
BssMI GATC 4 cut(s) 250, 376, 526, 535
Bst4CI ACNGT 1 cut(s) 38
Bst6I CTCTTC 2 cut(s) 175, 459
BstDEI CTNAG 2 cut(s) 22, 333
BstENI CCTNNNNNAGG 1 cut(s) 62
BstF5I GGATG 2 cut(s) 103, 289
BstFNI CGCG 1 cut(s) 531
BstKTI GATC 4 cut(s) 253, 379, 529, 538
BstMAI GTCTC 1 cut(s) 319
BstMBI GATC 4 cut(s) 250, 376, 526, 535
BstMWI GCNNNNNNNGC 1 cut(s) 475
BstUI CGCG 1 cut(s) 531
BstV1I GCAGC 2 cut(s) 93, 462
BstX2I RGATCY 2 cut(s) 250, 535
BstYI RGATCY 2 cut(s) 250, 535
BtsCI GGATG 2 cut(s) 103, 289
BtsIMutI CAGTG 2 cut(s) 30, 549
BtuMI TCGCGA 1 cut(s) 531
CaiI CAGNNNCTG 1 cut(s) 254
Csp6I GTAC 1 cut(s) 76
CviAII CATG 2 cut(s) 88, 427
CviJI RGCY 9 cut(s) 21, 57, 84, 156, 303, 353, 469, 475, 490
CviKI_1 RGCY 9 cut(s) 21, 57, 84, 156, 303, 353, 469, 475, 490
CviQI GTAC 1 cut(s) 76
DdeI CTNAG 2 cut(s) 22, 333
DpnI GATC 4 cut(s) 252, 378, 528, 537
DpnII GATC 4 cut(s) 250, 376, 526, 535
DraIII CACNNNGTG 1 cut(s) 67
Eam1104I CTCTTC 2 cut(s) 175, 459
EarI CTCTTC 2 cut(s) 175, 459
EciI GGCGGA 1 cut(s) 107
Ecl136II GAGCTC 1 cut(s) 303
Eco24I GRGCYC 1 cut(s) 305
Eco31I GGTCTC 1 cut(s) 319
Eco53kI GAGCTC 1 cut(s) 303
Eco57I CTGAAG 1 cut(s) 501
EcoICRI GAGCTC 1 cut(s) 303
EcoNI CCTNNNNNAGG 1 cut(s) 62
EcoT38I GRGCYC 1 cut(s) 305
FaeI CATG 2 cut(s) 91, 430
FaqI GGGAC 1 cut(s) 110
FatI CATG 2 cut(s) 87, 426
Fnu4HI GCNGC 3 cut(s) 30, 82, 476
FokI GGATG 2 cut(s) 110, 296
FriOI GRGCYC 1 cut(s) 305
Fsp4HI GCNGC 3 cut(s) 30, 82, 476
FspBI CTAG 1 cut(s) 344
GluI GCNGC 3 cut(s) 30, 82, 476
GsuI CTGGAG 1 cut(s) 491
HapII CCGG 1 cut(s) 191
Hin1II CATG 2 cut(s) 91, 430
HinfI GANTC 4 cut(s) 108, 118, 196, 509
HpaII CCGG 1 cut(s) 191
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 1 cut(s) 334
Hpy188III TCNNGA 4 cut(s) 115, 254, 442, 530
Hpy8I GTNNAC 1 cut(s) 76
HpyAV CCTTC 1 cut(s) 68
HpyCH4III ACNGT 1 cut(s) 38
HpyCH4V TGCA 2 cut(s) 262, 500
HpyF10VI GCNNNNNNNGC 1 cut(s) 475
HpyF3I CTNAG 2 cut(s) 22, 333
Hsp92II CATG 2 cut(s) 91, 430
Kzo9I GATC 4 cut(s) 250, 376, 526, 535
LguI GCTCTTC 1 cut(s) 459
LmnI GCTCC 3 cut(s) 300, 363, 472
LpnPI CCDG 8 cut(s) 153, 204, 210, 267, 335, 455, 492, 509
Lsp1109I GCAGC 2 cut(s) 93, 462
MaeI CTAG 1 cut(s) 344
MaeIII GTNAC 1 cut(s) 220
MalI GATC 4 cut(s) 252, 378, 528, 537
MboI GATC 4 cut(s) 250, 376, 526, 535
MboII GAAGA 3 cut(s) 191, 192, 476
MflI RGATCY 2 cut(s) 250, 535
MhlI GDGCHC 1 cut(s) 305
MluCI AATT 4 cut(s) 257, 275, 400, 419
MlyI GAGTC 2 cut(s) 117, 518
MroXI GAANNNNTTC 1 cut(s) 434
MspI CCGG 1 cut(s) 191
MvnI CGCG 1 cut(s) 531
MwoI GCNNNNNNNGC 1 cut(s) 475
NdeII GATC 4 cut(s) 250, 376, 526, 535
NlaIII CATG 2 cut(s) 91, 430
NlaIV GGNNCC 1 cut(s) 537
NmeAIII GCCGAG 2 cut(s) 131, 516
NruI TCGCGA 1 cut(s) 531
PciSI GCTCTTC 1 cut(s) 459
PdmI GAANNNNTTC 1 cut(s) 434
PfeI GAWTC 2 cut(s) 118, 196
PkrI GCNGC 3 cut(s) 31, 83, 477
PleI GAGTC 2 cut(s) 116, 517
PpsI GAGTC 2 cut(s) 116, 517
Psp124BI GAGCTC 1 cut(s) 305
PspN4I GGNNCC 1 cut(s) 537
PstNI CAGNNNCTG 1 cut(s) 254
PsuI RGATCY 2 cut(s) 250, 535
RruI TCGCGA 1 cut(s) 531
RsaI GTAC 1 cut(s) 77
RsaNI GTAC 1 cut(s) 76
SacI GAGCTC 1 cut(s) 305
SapI GCTCTTC 1 cut(s) 459
SatI GCNGC 3 cut(s) 30, 82, 476
Sau3AI GATC 4 cut(s) 250, 376, 526, 535
SchI GAGTC 2 cut(s) 117, 518
SduI GDGCHC 1 cut(s) 305
SetI ASST 8 cut(s) 23, 69, 167, 234, 305, 315, 471, 477
Sse9I AATT 4 cut(s) 257, 275, 400, 419
SsiI CCGC 2 cut(s) 29, 92
SspMI CTAG 1 cut(s) 344
SstI GAGCTC 1 cut(s) 305
TaaI ACNGT 1 cut(s) 38
TasI AATT 4 cut(s) 257, 275, 400, 419
TauI GCSGC 1 cut(s) 32
TfiI GAWTC 2 cut(s) 118, 196
TscAI CASTG 2 cut(s) 30, 549
TseI GCWGC 2 cut(s) 81, 475
TspDTI ATGAA 2 cut(s) 288, 443
TspRI CASTG 2 cut(s) 30, 549
XagI CCTNNNNNAGG 1 cut(s) 62
XapI RAATTY 2 cut(s) 275, 400
XmnI GAANNNNTTC 1 cut(s) 434
XspI CTAG 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.