Rh6BG449600

AIG2-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0010238
Physical Location & Seq
Reverse (-)
66407827 .. 66409441
1615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG449600.1

Sequence Viewer

Length: 381 bp
ATGAGTTCAGTGGCGATGGCGAACTCTCCGAGCGCCGTCCACAACGTGTTTGTCTACGGCAGCCTGATGGCCGAGGACGTGTTGTTAGGCATCACAGATCCTGAATTACATATTTTGGATGAATTTGAGGATGTTGAGTATCAGAGGGGCACTGTTGAGGTATCTTTGATGGATAGTTCTGAGAACTTAAGAGTTCATACTTATGTTTGGAGTGACAAAAATGACCCAAACTTGTATGGAGAATGGGATTTTGAGGTATGGAAACAAAGGCACATGGAAGATTTTATCAAGATGACTTCTGGTTTCATGGAAGAGCTGGAGCAACCTGAATCAAAGCCTAGAGTTGCAACATATGAATCCTTTTATCAGCAGGATGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GGACT

Protein Analysis

126

Amino Acids

14.62

Weight (kDa)

4.26

Isoelectric Point (pI)

51.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GGACT PF06094 28 - 83 9.9e-08 Gamma-glutamyl cyclotransferase, AIG2-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 54
AclWI GGATC 1 cut(s) 92
AcoI YGGCCR 1 cut(s) 69
AcsI RAATTY 1 cut(s) 122
AdeI CACNNNGTG 1 cut(s) 46
AflII CTTAAG 1 cut(s) 187
AflIII ACRYGT 2 cut(s) 45, 78
AjiI CACGTC 1 cut(s) 79
AluBI AGCT 1 cut(s) 316
AluI AGCT 1 cut(s) 316
AlwI GGATC 1 cut(s) 92
AlwNI CAGNNNCTG 1 cut(s) 101
AoxI GGCC 1 cut(s) 69
ApeKI GCWGC 1 cut(s) 60
ApoI RAATTY 1 cut(s) 122
AspLEI GCGC 1 cut(s) 35
BaeGI GKGCMC 1 cut(s) 152
BbvI GCAGC 1 cut(s) 72
BccI CCATC 4 cut(s) 10, 61, 163, 368
BceAI ACGGC 2 cut(s) 20, 73
BfaI CTAG 2 cut(s) 339, 379
BfoI RGCGCY 1 cut(s) 36
BfrI CTTAAG 1 cut(s) 187
BisI GCNGC 1 cut(s) 61
BlsI GCNGC 1 cut(s) 62
BmgBI CACGTC 1 cut(s) 79
BmsI GCATC 1 cut(s) 99
BpmI CTGGAG 1 cut(s) 338
BsaJI CCNNGG 1 cut(s) 72
BseDI CCNNGG 1 cut(s) 72
BseGI GGATG 3 cut(s) 124, 136, 379
BseMII CTCAG 1 cut(s) 171
BseSI GKGCMC 1 cut(s) 152
BseXI GCAGC 1 cut(s) 72
BshFI GGCC 1 cut(s) 71
BsnI GGCC 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 152
Bsp143I GATC 1 cut(s) 97
BspANI GGCC 1 cut(s) 71
BspCNI CTCAG 1 cut(s) 172
BspPI GGATC 1 cut(s) 92
BspQI GCTCTTC 1 cut(s) 306
BspTI CTTAAG 1 cut(s) 187
BssECI CCNNGG 1 cut(s) 72
BssMI GATC 1 cut(s) 97
Bst4CI ACNGT 1 cut(s) 154
Bst6I CTCTTC 1 cut(s) 306
BstAFI CTTAAG 1 cut(s) 187
BstDEI CTNAG 1 cut(s) 180
BstF5I GGATG 3 cut(s) 124, 136, 379
BstH2I RGCGCY 1 cut(s) 36
BstHHI GCGC 1 cut(s) 35
BstKTI GATC 1 cut(s) 100
BstMBI GATC 1 cut(s) 97
BstSLI GKGCMC 1 cut(s) 152
BstV1I GCAGC 1 cut(s) 72
BstX2I RGATCY 1 cut(s) 97
BstYI RGATCY 1 cut(s) 97
BsuRI GGCC 1 cut(s) 71
BtgZI GCGATG 1 cut(s) 29
BtrI CACGTC 1 cut(s) 79
BtsCI GGATG 3 cut(s) 124, 136, 379
BtsIMutI CAGTG 2 cut(s) 15, 150
CaiI CAGNNNCTG 1 cut(s) 101
CfoI GCGC 1 cut(s) 35
CviAII CATG 2 cut(s) 274, 307
CviJI RGCY 5 cut(s) 63, 71, 316, 337, 378
CviKI_1 RGCY 5 cut(s) 63, 71, 316, 337, 378
DdeI CTNAG 1 cut(s) 180
DpnI GATC 1 cut(s) 99
DpnII GATC 1 cut(s) 97
DraIII CACNNNGTG 1 cut(s) 46
EaeI YGGCCR 1 cut(s) 69
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
FaeI CATG 2 cut(s) 277, 310
FaiI YATR 9 cut(s) 111, 198, 204, 237, 259, 275, 308, 352, 354
FatI CATG 2 cut(s) 273, 306
FauNDI CATATG 1 cut(s) 352
FblI GTMKAC 1 cut(s) 54
Fnu4HI GCNGC 1 cut(s) 61
FokI GGATG 2 cut(s) 131, 143
Fsp4HI GCNGC 1 cut(s) 61
FspBI CTAG 2 cut(s) 339, 379
GlaI GCGC 1 cut(s) 34
GluI GCNGC 1 cut(s) 61
GsuI CTGGAG 1 cut(s) 338
HaeII RGCGCY 1 cut(s) 36
HaeIII GGCC 1 cut(s) 71
HhaI GCGC 1 cut(s) 35
Hin1II CATG 2 cut(s) 277, 310
Hin6I GCGC 1 cut(s) 33
HinP1I GCGC 1 cut(s) 33
HinfI GANTC 2 cut(s) 329, 356
Hpy166II GTNNAC 2 cut(s) 40, 55
Hpy188I TCNGA 3 cut(s) 30, 144, 181
Hpy188III TCNNGA 2 cut(s) 101, 289
Hpy8I GTNNAC 2 cut(s) 40, 55
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4IV ACGT 2 cut(s) 45, 78
HpyCH4V TGCA 1 cut(s) 347
HpyF3I CTNAG 1 cut(s) 180
HpySE526I ACGT 2 cut(s) 45, 78
Hsp92II CATG 2 cut(s) 277, 310
HspAI GCGC 1 cut(s) 33
Kzo9I GATC 1 cut(s) 97
LguI GCTCTTC 1 cut(s) 306
LmnI GCTCC 1 cut(s) 319
LpnPI CCDG 6 cut(s) 77, 114, 285, 302, 339, 356
Lsp1109I GCAGC 1 cut(s) 72
LweI GCATC 1 cut(s) 99
MaeI CTAG 2 cut(s) 339, 379
MaeII ACGT 2 cut(s) 45, 78
MaeIII GTNAC 1 cut(s) 212
MalI GATC 1 cut(s) 99
MboI GATC 1 cut(s) 97
MboII GAAGA 2 cut(s) 290, 323
MflI RGATCY 1 cut(s) 97
MhlI GDGCHC 1 cut(s) 152
MluCI AATT 2 cut(s) 104, 122
MnlI CCTC 5 cut(s) 67, 121, 138, 151, 247
MseI TTAA 1 cut(s) 188
MslI CAYNNNNRTG 1 cut(s) 201
MspCI CTTAAG 1 cut(s) 187
NdeI CATATG 1 cut(s) 352
NdeII GATC 1 cut(s) 97
NlaIII CATG 2 cut(s) 277, 310
NmeAIII GCCGAG 1 cut(s) 97
NmuCI GTSAC 1 cut(s) 212
PciSI GCTCTTC 1 cut(s) 306
PfeI GAWTC 2 cut(s) 329, 356
PkrI GCNGC 1 cut(s) 62
PstNI CAGNNNCTG 1 cut(s) 101
PsuI RGATCY 1 cut(s) 97
RseI CAYNNNNRTG 1 cut(s) 201
SapI GCTCTTC 1 cut(s) 306
SaqAI TTAA 1 cut(s) 188
SatI GCNGC 1 cut(s) 61
Sau3AI GATC 1 cut(s) 97
SduI GDGCHC 1 cut(s) 152
SetI ASST 6 cut(s) 48, 81, 162, 258, 318, 328
SfaNI GCATC 1 cut(s) 99
SmiMI CAYNNNNRTG 1 cut(s) 201
SmlI CTYRAG 1 cut(s) 187
SmoI CTYRAG 1 cut(s) 187
Sse9I AATT 2 cut(s) 104, 122
SspMI CTAG 2 cut(s) 339, 379
TaaI ACNGT 1 cut(s) 154
TaiI ACGT 2 cut(s) 48, 81
TasI AATT 2 cut(s) 104, 122
TfiI GAWTC 2 cut(s) 329, 356
Tru1I TTAA 1 cut(s) 188
Tru9I TTAA 1 cut(s) 188
TscAI CASTG 2 cut(s) 15, 157
TseFI GTSAC 1 cut(s) 212
TseI GCWGC 1 cut(s) 60
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 4 cut(s) 135, 185, 295, 369
TspRI CASTG 2 cut(s) 15, 157
Vha464I CTTAAG 1 cut(s) 187
XapI RAATTY 1 cut(s) 122
XmiI GTMKAC 1 cut(s) 54
XspI CTAG 2 cut(s) 339, 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.