Rmu_sc0012564.1_g000001

AIG2-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012564.1
OG0010238
Physical Location & Seq
Reverse (-)
2 .. 483
482 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012564.1_g000001.1.cds

Sequence Viewer

Length: 287 bp
atgagttcagtggcgatggcgaactctccgagcgtcgtccacaacgtgtttgtctacggcagcctgatggccgaggacgtctgtcgagtcctcttaaatcgagtccctcaatcctctaatgctaccctcaatggctatcataggtacagcatcaaaggacgtgtttatccggcgattctccccgtcgagaataaaaaagttaccggaaaggtgttgttaggcatcacagatcctgaattacatattttggatgaatttgaggatgttgagtatcagaggggcaccgt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GGACT

Protein Analysis

96

Amino Acids

10.65

Weight (kDa)

6.26

Isoelectric Point (pI)

49.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 81
AccB1I GGYRCC 1 cut(s) 281
AccI GTMKAC 1 cut(s) 54
AclWI GGATC 1 cut(s) 224
AcoI YGGCCR 1 cut(s) 69
AcsI RAATTY 1 cut(s) 254
AcyI GRCGYC 1 cut(s) 78
AdeI CACNNNGTG 1 cut(s) 46
AfaI GTAC 1 cut(s) 146
AflIII ACRYGT 2 cut(s) 45, 160
AjiI CACGTC 1 cut(s) 161
AlwI GGATC 1 cut(s) 224
AlwNI CAGNNNCTG 1 cut(s) 233
AoxI GGCC 1 cut(s) 69
ApeKI GCWGC 1 cut(s) 60
ApoI RAATTY 1 cut(s) 254
BaeGI GKGCMC 1 cut(s) 284
BanI GGYRCC 1 cut(s) 281
BbvI GCAGC 1 cut(s) 72
BccI CCATC 2 cut(s) 10, 61
BceAI ACGGC 1 cut(s) 73
BisI GCNGC 1 cut(s) 61
BlsI GCNGC 1 cut(s) 62
BmgBI CACGTC 1 cut(s) 161
BmiI GGNNCC 1 cut(s) 283
BmsI GCATC 2 cut(s) 159, 231
BoxI GACNNNNGTC 1 cut(s) 81
BsaHI GRCGYC 1 cut(s) 78
BsaJI CCNNGG 1 cut(s) 72
BsaWI WCCGGW 1 cut(s) 203
BseDI CCNNGG 1 cut(s) 72
BseGI GGATG 2 cut(s) 256, 268
BseSI GKGCMC 1 cut(s) 284
BseXI GCAGC 1 cut(s) 72
BshFI GGCC 1 cut(s) 71
BshNI GGYRCC 1 cut(s) 281
BsiSI CCGG 2 cut(s) 170, 204
BslFI GGGAC 1 cut(s) 89
BsmFI GGGAC 1 cut(s) 89
BsnI GGCC 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 284
Bsp143I GATC 1 cut(s) 229
BspANI GGCC 1 cut(s) 71
BspLI GGNNCC 1 cut(s) 283
BspPI GGATC 1 cut(s) 224
BspT107I GGYRCC 1 cut(s) 281
BssECI CCNNGG 1 cut(s) 72
BssMI GATC 1 cut(s) 229
BssNI GRCGYC 1 cut(s) 78
Bst4CI ACNGT 1 cut(s) 286
BstACI GRCGYC 1 cut(s) 78
BstF5I GGATG 2 cut(s) 256, 268
BstKTI GATC 1 cut(s) 232
BstMBI GATC 1 cut(s) 229
BstPAI GACNNNNGTC 1 cut(s) 81
BstSLI GKGCMC 1 cut(s) 284
BstV1I GCAGC 1 cut(s) 72
BstX2I RGATCY 1 cut(s) 229
BstYI RGATCY 1 cut(s) 229
BsuRI GGCC 1 cut(s) 71
BtgZI GCGATG 1 cut(s) 29
BtrI CACGTC 1 cut(s) 161
BtsCI GGATG 2 cut(s) 256, 268
BtsIMutI CAGTG 1 cut(s) 15
CaiI CAGNNNCTG 1 cut(s) 233
CseI GACGC 1 cut(s) 22
Csp6I GTAC 1 cut(s) 145
CviJI RGCY 3 cut(s) 63, 71, 135
CviKI_1 RGCY 3 cut(s) 63, 71, 135
CviQI GTAC 1 cut(s) 145
DpnI GATC 1 cut(s) 231
DpnII GATC 1 cut(s) 229
DraIII CACNNNGTG 1 cut(s) 46
EaeI YGGCCR 1 cut(s) 69
FaiI YATR 2 cut(s) 141, 243
FaqI GGGAC 1 cut(s) 89
FblI GTMKAC 1 cut(s) 54
Fnu4HI GCNGC 1 cut(s) 61
FokI GGATG 2 cut(s) 263, 275
Fsp4HI GCNGC 1 cut(s) 61
GluI GCNGC 1 cut(s) 61
HaeIII GGCC 1 cut(s) 71
HapII CCGG 2 cut(s) 170, 204
HgaI GACGC 1 cut(s) 22
Hin1I GRCGYC 1 cut(s) 78
HinfI GANTC 3 cut(s) 87, 102, 175
HpaII CCGG 2 cut(s) 170, 204
Hpy166II GTNNAC 2 cut(s) 40, 55
Hpy188I TCNGA 2 cut(s) 30, 276
Hpy188III TCNNGA 2 cut(s) 187, 233
Hpy8I GTNNAC 2 cut(s) 40, 55
Hpy99I CGWCG 2 cut(s) 38, 188
HpyCH4III ACNGT 1 cut(s) 286
HpyCH4IV ACGT 3 cut(s) 45, 78, 160
HpySE526I ACGT 3 cut(s) 45, 78, 160
Hsp92I GRCGYC 1 cut(s) 78
Kzo9I GATC 1 cut(s) 229
LpnPI CCDG 4 cut(s) 77, 183, 217, 246
Lsp1109I GCAGC 1 cut(s) 72
LweI GCATC 2 cut(s) 159, 231
MaeII ACGT 3 cut(s) 45, 78, 160
MaeIII GTNAC 1 cut(s) 199
MalI GATC 1 cut(s) 231
MboI GATC 1 cut(s) 229
MflI RGATCY 1 cut(s) 229
MhlI GDGCHC 1 cut(s) 284
MluCI AATT 2 cut(s) 236, 254
MlyI GAGTC 2 cut(s) 96, 111
MnlI CCTC 7 cut(s) 67, 101, 117, 124, 137, 253, 270
MseI TTAA 1 cut(s) 95
MspI CCGG 2 cut(s) 170, 204
NdeII GATC 1 cut(s) 229
NlaIV GGNNCC 1 cut(s) 283
NmeAIII GCCGAG 1 cut(s) 97
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PfeI GAWTC 1 cut(s) 175
PkrI GCNGC 1 cut(s) 62
PleI GAGTC 2 cut(s) 95, 110
PpsI GAGTC 2 cut(s) 95, 110
PshAI GACNNNNGTC 1 cut(s) 81
PspN4I GGNNCC 1 cut(s) 283
PstNI CAGNNNCTG 1 cut(s) 233
PsuI RGATCY 1 cut(s) 229
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
SaqAI TTAA 1 cut(s) 95
SatI GCNGC 1 cut(s) 61
Sau3AI GATC 1 cut(s) 229
SchI GAGTC 2 cut(s) 96, 111
SduI GDGCHC 1 cut(s) 284
SetI ASST 5 cut(s) 48, 81, 146, 163, 213
SfaNI GCATC 2 cut(s) 159, 231
Sse9I AATT 2 cut(s) 236, 254
TaaI ACNGT 1 cut(s) 286
TaiI ACGT 3 cut(s) 48, 81, 163
TaqI TCGA 3 cut(s) 85, 100, 186
TasI AATT 2 cut(s) 236, 254
TfiI GAWTC 1 cut(s) 175
Tru1I TTAA 1 cut(s) 95
Tru9I TTAA 1 cut(s) 95
TscAI CASTG 1 cut(s) 15
TseI GCWGC 1 cut(s) 60
TspDTI ATGAA 1 cut(s) 267
TspRI CASTG 1 cut(s) 15
XapI RAATTY 1 cut(s) 254
XmiI GTMKAC 1 cut(s) 54
ZraI GACGTC 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.