AT2G24420

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0007104
Physical Location & Seq
Forward (+)
10379948 .. 10383405
3458 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G24420.2

Sequence Viewer

Length: 1323 bp
ATGGCGGCCGCGAAACTCGTGGCGTTGTTACTTCTTCTCGCCTTGGTTTTCAATTTCACCACTTGTATCTTTGCCGACGCTGGAATCGACGGCGGCGATGAACCGAAACTTAGATCCGACGGCGGTGATATCGAATTGGATCAGCTTAATGCTAAAATCCGTGCCCTAGAATCTCAGATTGATGATAAAACCAAGGAACTTAAAGGCAGAGAAGAGTTAGTAACAGAGAAGGAGAAACTTCTTCAAGAGAGACAAGACAAAGTTGCTTCTTTGGAGACTGAGGTTTCTTCACTAAGGAAAAAAGGTTCATCAGATTCTGTGGAACTGTTGAGTAAAGCTCAAGCACGAGCTACTGAATTAGAGAAGCAGGTTGAGGTACTTAAGAAATTTCTGGAGCAGAAAAACAAGGAGAAAGAATTGATAGAAGCTCAGACTAGTGAAACCGAGAAGAAGCTAAACGAATTGAACTCGAGAGTGGAGAAACTTCACAAGACAAATGAAGAGCAGAAGAACAAAATACGAAAACTTGAGCGTGCTCTTAAAATTTCTGAGGAAGAAATGTTGCGGACAAAGCATGAAGCCACCACAAAGGCTAAGGAACTGATGGAGGTTCATGGGGCGTGGCTTCCCCCTTGGTTTGCTGTACACTGGAGTAGTTTTCAGACTGTTGCTGGGACACACTGGGACGCCCACGGCAAACCAGTTATGGAGAAAGTTACTCAAAAGGTGACGTTAGCAAAAAATCAAGCTGAAAAATGGGCTAAACCGCACATGGCTAATGTTAAAACTAAATATATTCCAGCCATAAAAGAGACTGTTAAAACGCATGTTGAGCCACACGTTCAAACACTATCTACCAAAGCGAAAGAGGCTTACCATGCTTCCAAGAGTGCGGTTACACCACATATTGTCAAGTTTCAAGAACATGTAGATCCCTATTACCAGGAGGCTAAAAAGTTTAGCAAGCCGTACGTTGATCAAGTGGCCACAGCCACAAAACCACATGTTGATAAGGTGAGAGCTACCATGAAGCCTTACACAACGAAGACTGTCCACTATTACAAAGAGTTCCTGGAATCTGCCTCAACTTATCACCACCAGCTTCAAGCCAATGTCGAAAGTAAACTGAAGAGCCATGAGCTGTTGGAACCTTTTGCCACCAAAGAGTTCATTTGGTTTGCAGCCTCTGCTTTGTTGGCCTTACCCATCTTCATAGTGTACAAATTCCTCTGTTCGCTCTTCTGCACAAAGACGAAGAAGCCTATCCGACAGTCTCATCAACATACTCGCCGTAAGGCCAGAAGGGGTCATTCTGACAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

440

Amino Acids

50.35

Weight (kDa)

9.35

Isoelectric Point (pI)

31.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Apolipoprotein PF01442 271 - 378 1e-07 Apolipoprotein A1/A4/E domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 358
AccII CGCG 1 cut(s) 11
AciI CCGC 7 cut(s) 5, 9, 93, 123, 565, 767, 893
AclWI GGATC 3 cut(s) 108, 147, 926
AcoI YGGCCR 2 cut(s) 6, 984
AcsI RAATTY 3 cut(s) 386, 543, 1223
AcuI CTGAAG 1 cut(s) 1148
AcyI GRCGYC 1 cut(s) 687
AfaI GTAC 4 cut(s) 378, 645, 971, 1220
AflII CTTAAG 1 cut(s) 380
AflIII ACRYGT 3 cut(s) 838, 925, 1003
AgsI TTSAA 6 cut(s) 52, 245, 466, 845, 920, 1106
AhlI ACTAGT 1 cut(s) 434
AjnI CCWGG 2 cut(s) 942, 1071
AloI GAACNNNNNNTCC 2 cut(s) 289, 321
AluBI AGCT 9 cut(s) 145, 338, 350, 428, 454, 749, 1022, 1102, 1141
AluI AGCT 9 cut(s) 145, 338, 350, 428, 454, 749, 1022, 1102, 1141
Alw21I GWGCWC 1 cut(s) 538
Alw26I GTCTC 4 cut(s) 244, 269, 806, 1278
AlwI GGATC 3 cut(s) 108, 147, 926
AlwNI CAGNNNCTG 2 cut(s) 317, 1187
Ama87I CYCGRG 1 cut(s) 469
AoxI GGCC 4 cut(s) 6, 984, 1197, 1296
ApeKI GCWGC 1 cut(s) 1181
ApoI RAATTY 3 cut(s) 386, 543, 1223
AsuHPI GGTGA 5 cut(s) 49, 137, 739, 1027, 1085
AvaI CYCGRG 1 cut(s) 469
BaeGI GKGCMC 1 cut(s) 166
BalI TGGCCA 1 cut(s) 986
BauI CACGAG 2 cut(s) 17, 345
BbsI GAAGAC 1 cut(s) 1052
Bbv12I GWGCWC 1 cut(s) 538
BbvI GCAGC 1 cut(s) 1193
BccI CCATC 2 cut(s) 598, 1214
BceAI ACGGC 5 cut(s) 106, 136, 709, 952, 1275
BciT130I CCWGG 2 cut(s) 944, 1073
BclI TGATCA 1 cut(s) 976
BcoDI GTCTC 4 cut(s) 244, 269, 806, 1278
BcuI ACTAGT 1 cut(s) 434
BfaI CTAG 2 cut(s) 167, 435
BfrI CTTAAG 1 cut(s) 380
BfuAI ACCTGC 1 cut(s) 358
BisI GCNGC 4 cut(s) 6, 9, 94, 1182
BlsI GCNGC 4 cut(s) 7, 10, 95, 1183
Bme1390I CCNGG 2 cut(s) 944, 1073
BmeT110I CYCGRG 1 cut(s) 469
BmiI GGNNCC 1 cut(s) 1149
BmrFI CCNGG 2 cut(s) 944, 1073
BmrI ACTGGG 1 cut(s) 691
BmuI ACTGGG 1 cut(s) 691
BpiI GAAGAC 1 cut(s) 1052
BplI GAGNNNNNCTC 2 cut(s) 322, 354
BpmI CTGGAG 2 cut(s) 413, 670
Bpu10I CCTNAGC 1 cut(s) 594
BpuEI CTTGAG 2 cut(s) 324, 548
BsaHI GRCGYC 1 cut(s) 687
BsaJI CCNNGG 4 cut(s) 42, 192, 632, 691
Bse1I ACTGG 3 cut(s) 653, 686, 701
BseBI CCWGG 2 cut(s) 944, 1073
BseDI CCNNGG 4 cut(s) 42, 192, 632, 691
BseMII CTCAG 4 cut(s) 188, 270, 443, 540
BseNI ACTGG 3 cut(s) 653, 686, 701
BseSI GKGCMC 1 cut(s) 166
BseX3I CGGCCG 1 cut(s) 6
BseXI GCAGC 1 cut(s) 1193
BseYI CCCAGC 1 cut(s) 671
BsgI GTGCAG 1 cut(s) 1228
Bsh1236I CGCG 1 cut(s) 11
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 4 cut(s) 8, 986, 1199, 1298
BsiEI CGRYCG 1 cut(s) 9
BsiHKAI GWGCWC 1 cut(s) 538
BsiHKCI CYCGRG 1 cut(s) 469
BsiWI CGTACG 1 cut(s) 969
BslFI GGGAC 2 cut(s) 688, 698
BsmAI GTCTC 4 cut(s) 244, 269, 806, 1278
BsmFI GGGAC 2 cut(s) 688, 698
BsnI GGCC 4 cut(s) 8, 986, 1199, 1298
BsoBI CYCGRG 1 cut(s) 469
Bsp1286I GDGCHC 2 cut(s) 166, 538
Bsp1407I TGTACA 2 cut(s) 643, 1218
Bsp143I GATC 4 cut(s) 113, 139, 931, 976
BspACI CCGC 7 cut(s) 5, 9, 93, 123, 565, 767, 893
BspANI GGCC 4 cut(s) 8, 986, 1199, 1298
BspCNI CTCAG 4 cut(s) 187, 271, 442, 541
BspFNI CGCG 1 cut(s) 11
BspLI GGNNCC 1 cut(s) 1149
BspMI ACCTGC 1 cut(s) 358
BspPI GGATC 3 cut(s) 108, 147, 926
BspQI GCTCTTC 3 cut(s) 495, 1124, 1244
BspTI CTTAAG 1 cut(s) 380
BsrGI TGTACA 2 cut(s) 643, 1218
BsrI ACTGG 3 cut(s) 653, 686, 701
BssECI CCNNGG 4 cut(s) 42, 192, 632, 691
BssMI GATC 4 cut(s) 113, 139, 931, 976
BssNI GRCGYC 1 cut(s) 687
BssSI CACGAG 2 cut(s) 17, 345
BssT1I CCWWGG 3 cut(s) 42, 192, 632
Bst2BI CACGAG 2 cut(s) 17, 345
Bst2UI CCWGG 2 cut(s) 944, 1073
Bst4CI ACNGT 5 cut(s) 327, 667, 817, 1051, 1272
Bst6I CTCTTC 4 cut(s) 207, 495, 1124, 1244
BstACI GRCGYC 1 cut(s) 687
BstAFI CTTAAG 1 cut(s) 380
BstAPI GCANNNNNTGC 1 cut(s) 1187
BstAUI TGTACA 2 cut(s) 643, 1218
BstC8I GCNNGC 2 cut(s) 534, 965
BstDEI CTNAG 7 cut(s) 110, 174, 279, 293, 429, 549, 594
BstDSI CCRYGG 1 cut(s) 691
BstFNI CGCG 1 cut(s) 11
BstKTI GATC 4 cut(s) 116, 142, 934, 979
BstMAI GTCTC 4 cut(s) 244, 269, 806, 1278
BstMBI GATC 4 cut(s) 113, 139, 931, 976
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 6 cut(s) 571, 832, 869, 878, 1187, 1196
BstNI CCWGG 2 cut(s) 944, 1073
BstNSI RCATGY 3 cut(s) 830, 929, 1007
BstSCI CCNGG 2 cut(s) 942, 1071
BstSLI GKGCMC 1 cut(s) 166
BstUI CGCG 1 cut(s) 11
BstV1I GCAGC 1 cut(s) 1193
BstV2I GAAGAC 1 cut(s) 1052
BstX2I RGATCY 2 cut(s) 113, 931
BstYI RGATCY 2 cut(s) 113, 931
BstZI CGGCCG 1 cut(s) 6
BsuRI GGCC 4 cut(s) 8, 986, 1199, 1298
BtgI CCRYGG 1 cut(s) 691
BtgZI GCGATG 1 cut(s) 111
BtsIMutI CAGTG 2 cut(s) 646, 679
BveI ACCTGC 1 cut(s) 358
Cac8I GCNNGC 2 cut(s) 534, 965
CaiI CAGNNNCTG 2 cut(s) 317, 1187
CciNI GCGGCCGC 1 cut(s) 6
CseI GACGC 2 cut(s) 86, 695
Csp6I GTAC 4 cut(s) 377, 644, 970, 1219
CviAII CATG 9 cut(s) 575, 614, 772, 827, 878, 926, 1004, 1027, 1136
CviQI GTAC 4 cut(s) 377, 644, 970, 1219
DdeI CTNAG 7 cut(s) 110, 174, 279, 293, 429, 549, 594
DpnI GATC 4 cut(s) 115, 141, 933, 978
DpnII GATC 4 cut(s) 113, 139, 931, 976
EaeI YGGCCR 2 cut(s) 6, 984
EagI CGGCCG 1 cut(s) 6
Eam1104I CTCTTC 4 cut(s) 207, 495, 1124, 1244
EarI CTCTTC 4 cut(s) 207, 495, 1124, 1244
EclXI CGGCCG 1 cut(s) 6
Eco130I CCWWGG 3 cut(s) 42, 192, 632
Eco32I GATATC 1 cut(s) 130
Eco52I CGGCCG 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 1148
Eco88I CYCGRG 1 cut(s) 469
EcoRII CCWGG 2 cut(s) 942, 1071
EcoRV GATATC 1 cut(s) 130
EcoT14I CCWWGG 3 cut(s) 42, 192, 632
ErhI CCWWGG 3 cut(s) 42, 192, 632
FaeI CATG 9 cut(s) 578, 617, 775, 830, 881, 929, 1007, 1030, 1139
FaqI GGGAC 2 cut(s) 688, 698
FatI CATG 9 cut(s) 574, 613, 771, 826, 877, 925, 1003, 1026, 1135
FbaI TGATCA 1 cut(s) 976
Fnu4HI GCNGC 4 cut(s) 6, 9, 94, 1182
Fsp4HI GCNGC 4 cut(s) 6, 9, 94, 1182
FspBI CTAG 2 cut(s) 167, 435
GluI GCNGC 4 cut(s) 6, 9, 94, 1182
GsaI CCCAGC 1 cut(s) 675
GsuI CTGGAG 2 cut(s) 413, 670
HaeIII GGCC 4 cut(s) 8, 986, 1199, 1298
HgaI GACGC 2 cut(s) 86, 695
Hin1I GRCGYC 1 cut(s) 687
Hin1II CATG 9 cut(s) 578, 617, 775, 830, 881, 929, 1007, 1030, 1139
HinfI GANTC 4 cut(s) 84, 170, 314, 1076
HphI GGTGA 5 cut(s) 49, 137, 739, 1027, 1085
Hpy166II GTNNAC 4 cut(s) 646, 1054, 1124, 1219
Hpy188I TCNGA 8 cut(s) 118, 177, 313, 432, 550, 663, 1268, 1315
Hpy188III TCNNGA 4 cut(s) 245, 392, 471, 920
Hpy8I GTNNAC 4 cut(s) 646, 1054, 1124, 1219
Hpy99I CGWCG 3 cut(s) 80, 92, 122
HpyAV CCTTC 2 cut(s) 223, 1296
HpyCH4III ACNGT 5 cut(s) 327, 667, 817, 1051, 1272
HpyCH4IV ACGT 3 cut(s) 731, 840, 972
HpyCH4V TGCA 2 cut(s) 1181, 1245
HpyF10VI GCNNNNNNNGC 6 cut(s) 571, 832, 869, 878, 1187, 1196
HpyF3I CTNAG 7 cut(s) 110, 174, 279, 293, 429, 549, 594
HpySE526I ACGT 3 cut(s) 731, 840, 972
Hsp92I GRCGYC 1 cut(s) 687
Hsp92II CATG 9 cut(s) 578, 617, 775, 830, 881, 929, 1007, 1030, 1139
Ksp22I TGATCA 1 cut(s) 976
Kzo9I GATC 4 cut(s) 113, 139, 931, 976
LguI GCTCTTC 3 cut(s) 495, 1124, 1244
LmnI GCTCC 1 cut(s) 394
Lsp1109I GCAGC 1 cut(s) 1193
MaeI CTAG 2 cut(s) 167, 435
MaeII ACGT 3 cut(s) 731, 840, 972
MaeIII GTNAC 5 cut(s) 27, 220, 715, 727, 895
MalI GATC 4 cut(s) 115, 141, 933, 978
MboI GATC 4 cut(s) 113, 139, 931, 976
MflI RGATCY 2 cut(s) 113, 931
MhlI GDGCHC 2 cut(s) 166, 538
MlsI TGGCCA 1 cut(s) 986
MluCI AATT 8 cut(s) 52, 134, 356, 386, 416, 461, 543, 1223
MluNI TGGCCA 1 cut(s) 986
MmeI TCCRAC 3 cut(s) 141, 1125, 1291
MnlI CCTC 9 cut(s) 274, 367, 544, 601, 862, 940, 1093, 1195, 1238
Mox20I TGGCCA 1 cut(s) 986
MscI TGGCCA 1 cut(s) 986
MseI TTAA 6 cut(s) 147, 201, 381, 540, 783, 819
Msp20I TGGCCA 1 cut(s) 986
MspCI CTTAAG 1 cut(s) 380
MspR9I CCNGG 2 cut(s) 944, 1073
MvaI CCWGG 2 cut(s) 944, 1073
MvnI CGCG 1 cut(s) 11
MwoI GCNNNNNNNGC 6 cut(s) 571, 832, 869, 878, 1187, 1196
NdeII GATC 4 cut(s) 113, 139, 931, 976
NlaIII CATG 9 cut(s) 578, 617, 775, 830, 881, 929, 1007, 1030, 1139
NlaIV GGNNCC 1 cut(s) 1149
NmuCI GTSAC 1 cut(s) 727
NotI GCGGCCGC 1 cut(s) 6
NspI RCATGY 3 cut(s) 830, 929, 1007
PaeR7I CTCGAG 1 cut(s) 469
PciI ACATGT 2 cut(s) 925, 1003
PciSI GCTCTTC 3 cut(s) 495, 1124, 1244
PcsI WCGNNNNNNNCGW 2 cut(s) 84, 93
PfeI GAWTC 4 cut(s) 84, 170, 314, 1076
Pfl23II CGTACG 1 cut(s) 969
PfoI TCCNGGA 1 cut(s) 1071
PkrI GCNGC 4 cut(s) 7, 10, 95, 1183
PscI ACATGT 2 cut(s) 925, 1003
Psp6I CCWGG 2 cut(s) 942, 1071
PspFI CCCAGC 1 cut(s) 671
PspGI CCWGG 2 cut(s) 942, 1071
PspLI CGTACG 1 cut(s) 969
PspN4I GGNNCC 1 cut(s) 1149
PstNI CAGNNNCTG 2 cut(s) 317, 1187
PsuI RGATCY 2 cut(s) 113, 931
RsaI GTAC 4 cut(s) 378, 645, 971, 1220
RsaNI GTAC 4 cut(s) 377, 644, 970, 1219
SapI GCTCTTC 3 cut(s) 495, 1124, 1244
SaqAI TTAA 6 cut(s) 147, 201, 381, 540, 783, 819
SatI GCNGC 4 cut(s) 6, 9, 94, 1182
Sau3AI GATC 4 cut(s) 113, 139, 931, 976
ScrFI CCNGG 2 cut(s) 944, 1073
SduI GDGCHC 2 cut(s) 166, 538
Sfr274I CTCGAG 1 cut(s) 469
SlaI CTCGAG 1 cut(s) 469
SmlI CTYRAG 4 cut(s) 339, 380, 469, 527
SmoI CTYRAG 4 cut(s) 339, 380, 469, 527
SpeI ACTAGT 1 cut(s) 434
Sse9I AATT 8 cut(s) 52, 134, 356, 386, 416, 461, 543, 1223
SsiI CCGC 7 cut(s) 5, 9, 93, 123, 565, 767, 893
SspMI CTAG 2 cut(s) 167, 435
StyD4I CCNGG 2 cut(s) 942, 1071
StyI CCWWGG 3 cut(s) 42, 192, 632
TaaI ACNGT 5 cut(s) 327, 667, 817, 1051, 1272
TaiI ACGT 3 cut(s) 734, 843, 975
TaqI TCGA 4 cut(s) 87, 132, 470, 1116
TasI AATT 8 cut(s) 52, 134, 356, 386, 416, 461, 543, 1223
TatI WGTACW 2 cut(s) 643, 1218
TauI GCSGC 3 cut(s) 8, 11, 96
TfiI GAWTC 4 cut(s) 84, 170, 314, 1076
Tru1I TTAA 6 cut(s) 147, 201, 381, 540, 783, 819
Tru9I TTAA 6 cut(s) 147, 201, 381, 540, 783, 819
TscAI CASTG 2 cut(s) 653, 686
TseFI GTSAC 1 cut(s) 727
TseI GCWGC 1 cut(s) 1181
Tsp45I GTSAC 1 cut(s) 727
TspDTI ATGAA 8 cut(s) 114, 297, 513, 591, 602, 1043, 1159, 1201
TspGWI ACGGA 1 cut(s) 149
TspRI CASTG 2 cut(s) 653, 686
Vha464I CTTAAG 1 cut(s) 380
XapI RAATTY 3 cut(s) 386, 543, 1223
XceI RCATGY 3 cut(s) 830, 929, 1007
XhoI CTCGAG 1 cut(s) 469
XspI CTAG 2 cut(s) 167, 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.