Rroxscaffold_7G00162620

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0007104
Physical Location & Seq
Reverse (-)
5048350 .. 5053792
5443 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00162620.1

Sequence Viewer

Length: 1338 bp
ATGGCGTCCTCAAAGCTCTTGATTCTCTGGGTCTTTCTGGCCCTAGTTTTTTCGCAAATTAGGGCTGAGGCTTCAGTCAAAGAAGATGAGCCACTGGAAGTAGTCCGATTGGACGGCCCTGATTCGTCCGCGCTGAAGATCGAGTTGGAGCAACTCAGGTCGAAGATCCACTCGCTCGAATTTGAAGTGGAGGAGAAAGTTAAGCAACTTCACAGTAAGGATGAGATAGTAGAACAGAAGAATAAAATCATTCAAGTGAACTCGGATGTCATCATGGCTCTGCAGAAAGAAGTTGATTCTCTCCAGAAAAAAGGGTCGCTGGATGTTGAGAAGCGGGTTGGCGAGGCTCATGCACTAGCTGGTGAATTAGAGAAGCAGGTTGCCAAACTTAAAAAGGAATTGGAAGCACAACATAAGGAGAAAGAGGCCTTGGAAGCCCGTGCCATTCAAGCTGAGAAGAAGATTGACGTTTTGATCTTGAAAATAGATAAGATCGAGAAGACTAATGATGAACAAAAGACCAAAATTCGAAACACTGAGCGTGCTCTTAAAGTTGCTGAGGAAGAAATGTTGAGGGCAAAGTTTGAGGCTACTTCTAAAGCAAAAGCGTTAACAGAGGTTCATGGTGCATGGCTTCCACATTGGCTTGCTGTTCATTTCGGCTATTGTCAGTCCTTTGTAGAGAAATACTGGAATGAGCATGGAAAACCTGCTGCAGAGGTGGTGATTCAGAAGGCCATGGAGAAAAAAGCTCAAGCTGGAAAGTGGGCTGAACCCCATGTGGAAGCAGTTAAAACTAAATGGATCCCAGCAGTCAAGGAACAGTGGTCAGTGGCGAAAGATTCTGTTGAACCTCATGTGCAATCACTAAGAACAAAGTCTATTGAAGCTTATAAGACATCAAAGAGTACATTAGCTCCCCATGTTATAAAAGCACAAGAGTATGTTGATCCTTACTTTCAGGAGGCAAAAAAGTTCAGCAAGCCGTATGTTGATCAGGTAGCCACTGTTGCAAAACCTCATGTTGAAAAAGTTAGAGTGGTGTTGAAGCCCTATACAAAGCAGGTTGTTCAGGCCTACAAGAAGTTTCTCAAATCCGCTTCAACATATCATCATCAGGTTCAAACTACCGTACGAGATACACTGAAAAAGCATGAACTGACAAGACCTCTTGCTACGAAAGAGTTGGAGTGGTTTGCGGCCTCTGCTTTGTTGGCACTTCCCATCTTAATTCTGTTCAGAGTTTTATCCTCAATTTTCTGTACAAAGTCAACGAAACCTGTACGAAGCACCCACCATTCACGTCGCAAGGCCAAAAGGGGTCATCCAGACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

445

Amino Acids

50.79

Weight (kDa)

9.45

Isoelectric Point (pI)

31.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Apolipoprotein PF01442 278 - 382 3.7e-06 Apolipoprotein A1/A4/E domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 894, 929
Acc36I ACCTGC 3 cut(s) 367, 718, 1054
AccII CGCG 1 cut(s) 131
AciI CCGC 4 cut(s) 129, 334, 1098, 1199
AclWI GGATC 4 cut(s) 160, 799, 812, 944
AcsI RAATTY 2 cut(s) 179, 525
AcuI CTGAAG 2 cut(s) 57, 155
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 4 cut(s) 910, 1134, 1264, 1284
AjiI CACGTC 1 cut(s) 1304
AjuI GAANNNNNNNTTGG 4 cut(s) 128, 160, 413, 445
AluBI AGCT 7 cut(s) 16, 359, 452, 752, 758, 890, 917
AluI AGCT 7 cut(s) 16, 359, 452, 752, 758, 890, 917
Alw21I GWGCWC 1 cut(s) 547
AlwI GGATC 4 cut(s) 160, 799, 812, 944
AoxI GGCC 7 cut(s) 39, 115, 426, 735, 1074, 1200, 1311
ApeKI GCWGC 1 cut(s) 713
ApoI RAATTY 2 cut(s) 179, 525
AspLEI GCGC 1 cut(s) 133
AspS9I GGNCC 2 cut(s) 40, 116
AsuHPI GGTGA 2 cut(s) 374, 736
AsuII TTCGAA 1 cut(s) 529
BamHI GGATCC 1 cut(s) 804
BbsI GAAGAC 1 cut(s) 506
Bbv12I GWGCWC 1 cut(s) 547
BbvCI CCTCAGC 2 cut(s) 66, 558
BbvI GCAGC 1 cut(s) 700
BccI CCATC 1 cut(s) 1232
BceAI ACGGC 2 cut(s) 130, 970
BcgI CGANNNNNNTGC 2 cut(s) 332, 366
BclI TGATCA 1 cut(s) 994
BfaI CTAG 2 cut(s) 44, 356
BfmI CTRYAG 2 cut(s) 281, 714
BfuAI ACCTGC 3 cut(s) 367, 718, 1054
BisI GCNGC 2 cut(s) 714, 1200
BlsI GCNGC 2 cut(s) 715, 1201
BmgBI CACGTC 1 cut(s) 1304
BmgT120I GGNCC 2 cut(s) 40, 116
BmiI GGNNCC 1 cut(s) 806
BpiI GAAGAC 1 cut(s) 506
BpmI CTGGAG 1 cut(s) 287
Bpu10I CCTNAGC 2 cut(s) 66, 558
Bpu14I TTCGAA 1 cut(s) 529
BpuEI CTTGAG 1 cut(s) 738
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 429, 738
BsaXI ACNNNNNCTCC 2 cut(s) 901, 931
Bse1I ACTGG 2 cut(s) 99, 695
BseDI CCNNGG 2 cut(s) 429, 738
BseGI GGATG 4 cut(s) 226, 271, 328, 1324
BseMII CTCAG 5 cut(s) 57, 169, 444, 528, 549
BseNI ACTGG 2 cut(s) 99, 695
BseRI GAGGAG 1 cut(s) 206
BseXI GCAGC 1 cut(s) 700
BseYI CCCAGC 1 cut(s) 808
Bsh1236I CGCG 1 cut(s) 131
BshFI GGCC 7 cut(s) 41, 117, 428, 737, 1076, 1202, 1313
BsiHKAI GWGCWC 1 cut(s) 547
BsiWI CGTACG 1 cut(s) 1132
BsnI GGCC 7 cut(s) 41, 117, 428, 737, 1076, 1202, 1313
Bsp119I TTCGAA 1 cut(s) 529
Bsp1286I GDGCHC 1 cut(s) 547
Bsp1407I TGTACA 1 cut(s) 1262
Bsp143I GATC 7 cut(s) 138, 165, 474, 492, 804, 949, 994
Bsp19I CCATGG 1 cut(s) 738
BspACI CCGC 4 cut(s) 129, 334, 1098, 1199
BspANI GGCC 7 cut(s) 41, 117, 428, 737, 1076, 1202, 1313
BspCNI CTCAG 5 cut(s) 58, 168, 445, 529, 550
BspFNI CGCG 1 cut(s) 131
BspLI GGNNCC 1 cut(s) 806
BspMAI CTGCAG 2 cut(s) 285, 718
BspMI ACCTGC 3 cut(s) 367, 718, 1054
BspPI GGATC 4 cut(s) 160, 799, 812, 944
BspT104I TTCGAA 1 cut(s) 529
BsrGI TGTACA 1 cut(s) 1262
BsrI ACTGG 2 cut(s) 99, 695
BssECI CCNNGG 2 cut(s) 429, 738
BssMI GATC 7 cut(s) 138, 165, 474, 492, 804, 949, 994
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 2 cut(s) 429, 738
Bst4CI ACNGT 4 cut(s) 215, 825, 1009, 1132
BstACI GRCGYC 1 cut(s) 5
BstAUI TGTACA 1 cut(s) 1262
BstBI TTCGAA 1 cut(s) 529
BstC8I GCNNGC 3 cut(s) 543, 648, 983
BstDEI CTNAG 6 cut(s) 66, 155, 453, 537, 558, 869
BstDSI CCRYGG 1 cut(s) 738
BstF5I GGATG 4 cut(s) 226, 271, 328, 1324
BstFNI CGCG 1 cut(s) 131
BstHHI GCGC 1 cut(s) 133
BstKTI GATC 7 cut(s) 141, 168, 477, 495, 807, 952, 997
BstMBI GATC 7 cut(s) 138, 165, 474, 492, 804, 949, 994
BstMWI GCNNNNNNNGC 5 cut(s) 434, 449, 1010, 1205, 1214
BstSFI CTRYAG 2 cut(s) 281, 714
BstUI CGCG 1 cut(s) 131
BstV1I GCAGC 1 cut(s) 700
BstV2I GAAGAC 1 cut(s) 506
BstX2I RGATCY 2 cut(s) 165, 804
BstYI RGATCY 2 cut(s) 165, 804
BsuRI GGCC 7 cut(s) 41, 117, 428, 737, 1076, 1202, 1313
BtgI CCRYGG 1 cut(s) 738
BtrI CACGTC 1 cut(s) 1304
BtsCI GGATG 4 cut(s) 226, 271, 328, 1324
BtsIMutI CAGTG 6 cut(s) 92, 534, 830, 837, 1005, 1142
BveI ACCTGC 3 cut(s) 367, 718, 1054
Cac8I GCNNGC 3 cut(s) 543, 648, 983
CfoI GCGC 1 cut(s) 133
Cfr13I GGNCC 2 cut(s) 40, 116
Csp6I GTAC 4 cut(s) 909, 1133, 1263, 1283
CviQI GTAC 4 cut(s) 909, 1133, 1263, 1283
DdeI CTNAG 6 cut(s) 66, 155, 453, 537, 558, 869
DpnI GATC 7 cut(s) 140, 167, 476, 494, 806, 951, 996
DpnII GATC 7 cut(s) 138, 165, 474, 492, 804, 949, 994
Eco130I CCWWGG 2 cut(s) 429, 738
Eco147I AGGCCT 2 cut(s) 428, 1076
Eco57I CTGAAG 2 cut(s) 57, 155
EcoT14I CCWWGG 2 cut(s) 429, 738
ErhI CCWWGG 2 cut(s) 429, 738
FauI CCCGC 1 cut(s) 327
FbaI TGATCA 1 cut(s) 994
Fnu4HI GCNGC 2 cut(s) 714, 1200
FokI GGATG 4 cut(s) 233, 278, 335, 1311
Fsp4HI GCNGC 2 cut(s) 714, 1200
FspBI CTAG 2 cut(s) 44, 356
GlaI GCGC 1 cut(s) 132
GluI GCNGC 2 cut(s) 714, 1200
GsaI CCCAGC 1 cut(s) 812
GsuI CTGGAG 1 cut(s) 287
HaeIII GGCC 7 cut(s) 41, 117, 428, 737, 1076, 1202, 1313
HhaI GCGC 1 cut(s) 133
Hin1I GRCGYC 1 cut(s) 5
Hin6I GCGC 1 cut(s) 131
HinP1I GCGC 1 cut(s) 131
HincII GTYRAC 2 cut(s) 612, 1272
HindII GTYRAC 2 cut(s) 612, 1272
HindIII AAGCTT 1 cut(s) 888
HinfI GANTC 5 cut(s) 22, 122, 296, 727, 842
HpaI GTTAAC 1 cut(s) 612
HphI GGTGA 2 cut(s) 374, 736
Hpy166II GTNNAC 3 cut(s) 259, 612, 1272
Hpy188I TCNGA 4 cut(s) 107, 265, 732, 1241
Hpy188III TCNNGA 6 cut(s) 19, 304, 478, 496, 962, 1328
Hpy8I GTNNAC 3 cut(s) 259, 612, 1272
Hpy99I CGWCG 1 cut(s) 1308
HpyAV CCTTC 1 cut(s) 727
HpyCH4III ACNGT 4 cut(s) 215, 825, 1009, 1132
HpyCH4IV ACGT 2 cut(s) 468, 1303
HpyCH4V TGCA 6 cut(s) 283, 353, 629, 716, 862, 1013
HpyF10VI GCNNNNNNNGC 5 cut(s) 434, 449, 1010, 1205, 1214
HpyF3I CTNAG 6 cut(s) 66, 155, 453, 537, 558, 869
HpySE526I ACGT 2 cut(s) 468, 1303
Hsp92I GRCGYC 1 cut(s) 5
HspAI GCGC 1 cut(s) 131
Ksp22I TGATCA 1 cut(s) 994
KspAI GTTAAC 1 cut(s) 612
Kzo9I GATC 7 cut(s) 138, 165, 474, 492, 804, 949, 994
LmnI GCTCC 2 cut(s) 148, 922
Lsp1109I GCAGC 1 cut(s) 700
MaeI CTAG 2 cut(s) 44, 356
MaeII ACGT 2 cut(s) 468, 1303
MalI GATC 7 cut(s) 140, 167, 476, 494, 806, 951, 996
MboI GATC 7 cut(s) 138, 165, 474, 492, 804, 949, 994
MboII GAAGA 8 cut(s) 95, 148, 175, 250, 469, 472, 511, 575
MflI RGATCY 2 cut(s) 165, 804
MhlI GDGCHC 1 cut(s) 547
MluCI AATT 7 cut(s) 57, 179, 365, 398, 525, 1230, 1254
MmeI TCCRAC 2 cut(s) 126, 1167
MseI TTAA 6 cut(s) 201, 390, 549, 611, 792, 1229
MslI CAYNNNNRTG 1 cut(s) 254
MvnI CGCG 1 cut(s) 131
MwoI GCNNNNNNNGC 5 cut(s) 434, 449, 1010, 1205, 1214
NcoI CCATGG 1 cut(s) 738
NdeII GATC 7 cut(s) 138, 165, 474, 492, 804, 949, 994
NlaIV GGNNCC 1 cut(s) 806
NspV TTCGAA 1 cut(s) 529
PceI AGGCCT 2 cut(s) 428, 1076
PfeI GAWTC 5 cut(s) 22, 122, 296, 727, 842
Pfl23II CGTACG 1 cut(s) 1132
PkrI GCNGC 2 cut(s) 715, 1201
PsiI TTATAA 2 cut(s) 894, 929
PspFI CCCAGC 1 cut(s) 808
PspLI CGTACG 1 cut(s) 1132
PspN4I GGNNCC 1 cut(s) 806
PspPI GGNCC 2 cut(s) 40, 116
PstI CTGCAG 2 cut(s) 285, 718
PsuI RGATCY 2 cut(s) 165, 804
RsaI GTAC 4 cut(s) 910, 1134, 1264, 1284
RsaNI GTAC 4 cut(s) 909, 1133, 1263, 1283
RseI CAYNNNNRTG 1 cut(s) 254
SaqAI TTAA 6 cut(s) 201, 390, 549, 611, 792, 1229
SatI GCNGC 2 cut(s) 714, 1200
Sau3AI GATC 7 cut(s) 138, 165, 474, 492, 804, 949, 994
Sau96I GGNCC 2 cut(s) 40, 116
SduI GDGCHC 1 cut(s) 547
SfcI CTRYAG 2 cut(s) 281, 714
SfuI TTCGAA 1 cut(s) 529
SmiMI CAYNNNNRTG 1 cut(s) 254
SmlI CTYRAG 1 cut(s) 753
SmoI CTYRAG 1 cut(s) 753
Sse9I AATT 7 cut(s) 57, 179, 365, 398, 525, 1230, 1254
SseBI AGGCCT 2 cut(s) 428, 1076
SsiI CCGC 4 cut(s) 129, 334, 1098, 1199
SspMI CTAG 2 cut(s) 44, 356
StuI AGGCCT 2 cut(s) 428, 1076
StyI CCWWGG 2 cut(s) 429, 738
TaaI ACNGT 4 cut(s) 215, 825, 1009, 1132
TaiI ACGT 2 cut(s) 471, 1306
TaqI TCGA 5 cut(s) 141, 161, 177, 495, 529
TasI AATT 7 cut(s) 57, 179, 365, 398, 525, 1230, 1254
TatI WGTACW 2 cut(s) 908, 1262
TauI GCSGC 1 cut(s) 1202
TfiI GAWTC 5 cut(s) 22, 122, 296, 727, 842
Tru1I TTAA 6 cut(s) 201, 390, 549, 611, 792, 1229
Tru9I TTAA 6 cut(s) 201, 390, 549, 611, 792, 1229
TscAI CASTG 6 cut(s) 99, 541, 830, 837, 1012, 1149
TseI GCWGC 1 cut(s) 713
TspDTI ATGAA 4 cut(s) 525, 611, 644, 1170
TspRI CASTG 6 cut(s) 99, 541, 830, 837, 1012, 1149
XapI RAATTY 2 cut(s) 179, 525
XspI CTAG 2 cut(s) 44, 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.