pycom15g09290

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0007104
Physical Location & Seq
Reverse (-)
6029925 .. 6030224
300 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g09290.1

Sequence Viewer

Length: 300 bp
ATGGCGGCCTCCAAGCTCGCGATTCTCTCAGTCATTCTTGCCCTAATTCTCTCCCAGATTCGGGCTGACGCTTCAGTCCCGGTGGAAGAAGACGAGCCAGTGAAGCTCCCCCGATCGGACGGCCCTGAACCGTCCGCTCTGAAGATCGAGTTGGATAAGCACAGGGCTAAGATCCACTCCCTAGGTTCGTTTCTATCGTCTTCTGCGAATTCTTTATTGGACGAAATTTGTGATTTTTCAAATGTTTGTGGATTCGATTTTATCCCTCGGTTTTCTCGCCATCCAAACAGATTTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

10.91

Weight (kDa)

5.85

Isoelectric Point (pI)

55.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 74
AccBSI CCGCTC 1 cut(s) 137
AccII CGCG 1 cut(s) 20
AciI CCGC 2 cut(s) 5, 135
AclWI GGATC 1 cut(s) 166
AcsI RAATTY 2 cut(s) 208, 225
AcuI CTGAAG 2 cut(s) 57, 161
AfiI CCNNNNNNNGG 3 cut(s) 60, 61, 115
AgsI TTSAA 1 cut(s) 240
AjuI GAANNNNNNNTTGG 4 cut(s) 134, 166, 200, 232
AluBI AGCT 2 cut(s) 16, 106
AluI AGCT 2 cut(s) 16, 106
AlwI GGATC 1 cut(s) 166
AoxI GGCC 2 cut(s) 6, 121
ApoI RAATTY 2 cut(s) 208, 225
AspA2I CCTAGG 1 cut(s) 181
AspS9I GGNCC 1 cut(s) 122
AsuC2I CCSGG 1 cut(s) 80
AvrII CCTAGG 1 cut(s) 181
BbsI GAAGAC 2 cut(s) 96, 192
BccI CCATC 1 cut(s) 288
BceAI ACGGC 1 cut(s) 136
BcnI CCSGG 1 cut(s) 80
BfaI CTAG 1 cut(s) 182
BisI GCNGC 1 cut(s) 6
BlnI CCTAGG 1 cut(s) 181
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 80
BmgT120I GGNCC 1 cut(s) 122
BmrFI CCNGG 1 cut(s) 80
BpiI GAAGAC 2 cut(s) 96, 192
BpuMI CCSGG 1 cut(s) 80
BsaJI CCNNGG 2 cut(s) 181, 266
Bsc4I CCNNNNNNNGG 3 cut(s) 60, 61, 115
Bse1I ACTGG 1 cut(s) 98
BseDI CCNNGG 2 cut(s) 181, 266
BseGI GGATG 1 cut(s) 280
BseLI CCNNNNNNNGG 3 cut(s) 60, 61, 115
BseMII CTCAG 1 cut(s) 42
BseNI ACTGG 1 cut(s) 98
Bsh1236I CGCG 1 cut(s) 20
Bsh1285I CGRYCG 1 cut(s) 116
BshFI GGCC 2 cut(s) 8, 123
BsiEI CGRYCG 1 cut(s) 116
BsiSI CCGG 1 cut(s) 80
BslFI GGGAC 1 cut(s) 62
BslI CCNNNNNNNGG 3 cut(s) 60, 61, 115
BsmFI GGGAC 1 cut(s) 62
BsnI GGCC 2 cut(s) 8, 123
Bsp143I GATC 3 cut(s) 113, 144, 171
Bsp68I TCGCGA 1 cut(s) 20
BspACI CCGC 2 cut(s) 5, 135
BspANI GGCC 2 cut(s) 8, 123
BspCNI CTCAG 1 cut(s) 41
BspFNI CGCG 1 cut(s) 20
BspPI GGATC 1 cut(s) 166
BsrBI CCGCTC 1 cut(s) 137
BsrI ACTGG 1 cut(s) 98
BssECI CCNNGG 2 cut(s) 181, 266
BssMI GATC 3 cut(s) 113, 144, 171
BssT1I CCWWGG 1 cut(s) 181
Bst4CI ACNGT 1 cut(s) 132
BstC8I GCNNGC 1 cut(s) 18
BstDEI CTNAG 2 cut(s) 28, 168
BstF5I GGATG 1 cut(s) 280
BstFNI CGCG 1 cut(s) 20
BstKTI GATC 3 cut(s) 116, 147, 174
BstMBI GATC 3 cut(s) 113, 144, 171
BstMCI CGRYCG 1 cut(s) 116
BstMWI GCNNNNNNNGC 1 cut(s) 103
BstSCI CCNGG 1 cut(s) 78
BstUI CGCG 1 cut(s) 20
BstV2I GAAGAC 2 cut(s) 96, 192
BstX2I RGATCY 1 cut(s) 171
BstYI RGATCY 1 cut(s) 171
BsuRI GGCC 2 cut(s) 8, 123
BtsCI GGATG 1 cut(s) 280
BtsIMutI CAGTG 1 cut(s) 105
BtuMI TCGCGA 1 cut(s) 20
Cac8I GCNNGC 1 cut(s) 18
Cfr13I GGNCC 1 cut(s) 122
CseI GACGC 1 cut(s) 77
CviJI RGCY 7 cut(s) 8, 16, 65, 97, 106, 123, 167
CviKI_1 RGCY 7 cut(s) 8, 16, 65, 97, 106, 123, 167
DdeI CTNAG 2 cut(s) 28, 168
DpnI GATC 3 cut(s) 115, 146, 173
DpnII GATC 3 cut(s) 113, 144, 171
DrdI GACNNNNNNGTC 1 cut(s) 74
DseDI GACNNNNNNGTC 1 cut(s) 74
Eco130I CCWWGG 1 cut(s) 181
Eco57I CTGAAG 2 cut(s) 57, 161
EcoRI GAATTC 1 cut(s) 208
EcoT14I CCWWGG 1 cut(s) 181
ErhI CCWWGG 1 cut(s) 181
FaqI GGGAC 1 cut(s) 62
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 1 cut(s) 267
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 1 cut(s) 182
GluI GCNGC 1 cut(s) 6
HaeIII GGCC 2 cut(s) 8, 123
HapII CCGG 1 cut(s) 80
HgaI GACGC 1 cut(s) 77
HinfI GANTC 3 cut(s) 22, 58, 252
HpaII CCGG 1 cut(s) 80
Hpy188I TCNGA 2 cut(s) 118, 141
Hpy188III TCNNGA 1 cut(s) 19
HpyCH4III ACNGT 1 cut(s) 132
HpyF10VI GCNNNNNNNGC 1 cut(s) 103
HpyF3I CTNAG 2 cut(s) 28, 168
Kzo9I GATC 3 cut(s) 113, 144, 171
LmnI GCTCC 1 cut(s) 111
LpnPI CCDG 5 cut(s) 68, 93, 111, 138, 148
MaeI CTAG 1 cut(s) 182
MalI GATC 3 cut(s) 115, 146, 173
MbiI CCGCTC 1 cut(s) 137
MboI GATC 3 cut(s) 113, 144, 171
MboII GAAGA 4 cut(s) 98, 101, 154, 192
MflI RGATCY 1 cut(s) 171
MluCI AATT 3 cut(s) 45, 208, 225
MmeI TCCRAC 1 cut(s) 132
MnlI CCTC 2 cut(s) 19, 276
MspI CCGG 1 cut(s) 80
MspR9I CCNGG 1 cut(s) 80
MvnI CGCG 1 cut(s) 20
MwoI GCNNNNNNNGC 1 cut(s) 103
NciI CCSGG 1 cut(s) 80
NdeII GATC 3 cut(s) 113, 144, 171
NruI TCGCGA 1 cut(s) 20
PcsI WCGNNNNNNNCGW 2 cut(s) 194, 203
PfeI GAWTC 3 cut(s) 22, 58, 252
PkrI GCNGC 1 cut(s) 7
Ple19I CGATCG 1 cut(s) 116
PspPI GGNCC 1 cut(s) 122
PsuI RGATCY 1 cut(s) 171
PvuI CGATCG 1 cut(s) 116
RruI TCGCGA 1 cut(s) 20
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 3 cut(s) 113, 144, 171
Sau96I GGNCC 1 cut(s) 122
ScrFI CCNGG 1 cut(s) 80
SetI ASST 3 cut(s) 18, 108, 187
Sse9I AATT 3 cut(s) 45, 208, 225
SsiI CCGC 2 cut(s) 5, 135
SspMI CTAG 1 cut(s) 182
StyD4I CCNGG 1 cut(s) 78
StyI CCWWGG 1 cut(s) 181
TaaI ACNGT 1 cut(s) 132
TaqI TCGA 2 cut(s) 147, 255
TasI AATT 3 cut(s) 45, 208, 225
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 3 cut(s) 22, 58, 252
TscAI CASTG 1 cut(s) 105
TspRI CASTG 1 cut(s) 105
XapI RAATTY 2 cut(s) 208, 225
XmaJI CCTAGG 1 cut(s) 181
XspI CTAG 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.