Rh6CG467100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0007104
Physical Location & Seq
Forward (+)
63907926 .. 63912889
4964 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG467100.1

Sequence Viewer

Length: 1161 bp
ATGGCGTCCTCAAAGCTCTTGATTCTCTCGGTCTTTCTGGCCCTAGTTTTCTCGCAAATTAGGGCTGAGGCTTCAGTCAAAGAAGATGAGCCACTGGAAGTAGTCCGATCGGACGGCCCTGATTCGTCCGCGCTGAAGATCGAGTTGGATCAACTCAGGTCGAAGATCCACTCGCTCGAATTTGAAGTGGAGGAGAAAGTTAAGCAACTTCACAGTAAGGATGAGATAGTAGAACAGAAGAATAAAATCATTCAAGTGAACTCGGATGTCATCATGGCTCTGCAGAAAGAAGTTGATTCTCTCCAGAAAAAAGGGTCGCTGGATGTTGAGAAGCGGGTTGGCGAGGCTCATGCACGAGCTGGTGAATTAGAGAAGCAGGTTGACAAACTTAAAAAGGAATTGGAAGCACAACATAAGGAGAAAGAGGCCTTGGAAGCCCGTGCCAATCAAGCTGAGAAGAAGATTGACGTTTTGATCTTGAAAATAGATAAGATCGAGAAGACTAATGATGAACAAAAGACCAAAATTCGAAATACTGAACGTGCTCTTAAAGTTGCTGAGGAAGAAATGTTGAGGGCAAAGTTTGAGGCTACTTCTAAAGCAAAAGCATTAACAGAGGTTCATGGTGCATGGCTTCCACATTGGCTTGCTGTTCATTTCGGCTATTGTCAGTCCTTTGTAGAGAAATACTGGAATGAGCATGGAAAACCTGCTGCAGAGGTGGTGATTCAGAAGGCCCTGGAGAAAAAAGCTCAAGCTGGAAAGTGGGCTGAACCCCATGTGGAAGCAGTTAAAACTAAATGGATCCCGGCAGTCAAGGAACACTGGTCAGTGGCGAAAGATTCTGTTGAACCTCATGTGCAATCACTAAGAACAAAGTCTATTGAAGCTTATAAGACAACAAAGAGTACATTAGCTCCCCATGTTGTAAAAACACAAGAGTTTGTTGATCCTTACTTTCAGGAGGCAAAAAAGTTCAGCAAGCCATATGTTGATCAGGTAGCCACTGTTGCAAAACCTCATGTTGAAAAAGTTAGAGTGGTGTTGAAGCCCTATACAAAGCAGGTTGTTCAGGCCTACGAGAAGTTTCTCAAATCCGCTTCAACATATCATCATCAGGTATCAGCATCAATCTGGCAAAACCTACCCTTCATTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

386

Amino Acids

44.02

Weight (kDa)

8.91

Isoelectric Point (pI)

28.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Apolipoprotein PF01442 278 - 365 2.4e-06 Apolipoprotein A1/A4/E domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 894
Acc36I ACCTGC 3 cut(s) 367, 718, 1054
AccII CGCG 1 cut(s) 131
AciI CCGC 3 cut(s) 129, 334, 1098
AclWI GGATC 5 cut(s) 156, 160, 799, 812, 944
AcsI RAATTY 2 cut(s) 179, 525
AcuI CTGAAG 2 cut(s) 57, 155
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 910
AgsI TTSAA 8 cut(s) 185, 254, 481, 851, 887, 1028, 1048, 1104
AjnI CCWGG 1 cut(s) 738
AjuI GAANNNNNNNTTGG 4 cut(s) 128, 160, 413, 445
AluBI AGCT 7 cut(s) 16, 359, 452, 752, 758, 890, 917
AluI AGCT 7 cut(s) 16, 359, 452, 752, 758, 890, 917
Alw21I GWGCWC 1 cut(s) 547
AlwI GGATC 5 cut(s) 156, 160, 799, 812, 944
AoxI GGCC 5 cut(s) 39, 115, 426, 735, 1074
ApeKI GCWGC 1 cut(s) 713
ApoI RAATTY 2 cut(s) 179, 525
AspLEI GCGC 1 cut(s) 133
AspS9I GGNCC 3 cut(s) 40, 116, 736
AsuC2I CCSGG 1 cut(s) 809
AsuHPI GGTGA 2 cut(s) 374, 736
AsuII TTCGAA 1 cut(s) 529
BamHI GGATCC 1 cut(s) 804
BauI CACGAG 1 cut(s) 354
BbsI GAAGAC 1 cut(s) 506
Bbv12I GWGCWC 1 cut(s) 547
BbvCI CCTCAGC 2 cut(s) 66, 558
BbvI GCAGC 1 cut(s) 700
BceAI ACGGC 1 cut(s) 130
BcgI CGANNNNNNTGC 2 cut(s) 332, 366
BciT130I CCWGG 1 cut(s) 740
BclI TGATCA 1 cut(s) 994
BcnI CCSGG 1 cut(s) 809
BfaI CTAG 1 cut(s) 44
BfmI CTRYAG 2 cut(s) 281, 714
BfuAI ACCTGC 3 cut(s) 367, 718, 1054
BisI GCNGC 1 cut(s) 714
BlsI GCNGC 1 cut(s) 715
Bme1390I CCNGG 2 cut(s) 740, 809
BmgT120I GGNCC 3 cut(s) 40, 116, 736
BmiI GGNNCC 1 cut(s) 806
BmrFI CCNGG 2 cut(s) 740, 809
BmsI GCATC 1 cut(s) 1136
BpiI GAAGAC 1 cut(s) 506
BpmI CTGGAG 2 cut(s) 287, 761
Bpu10I CCTNAGC 2 cut(s) 66, 558
Bpu14I TTCGAA 1 cut(s) 529
BpuEI CTTGAG 1 cut(s) 738
BpuMI CCSGG 1 cut(s) 809
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 429, 738
BsaXI ACNNNNNCTCC 2 cut(s) 901, 931
Bse1I ACTGG 3 cut(s) 99, 695, 830
BseBI CCWGG 1 cut(s) 740
BseDI CCNNGG 2 cut(s) 429, 738
BseGI GGATG 3 cut(s) 226, 271, 328
BseMII CTCAG 4 cut(s) 57, 169, 444, 549
BseNI ACTGG 3 cut(s) 99, 695, 830
BseRI GAGGAG 1 cut(s) 206
BseXI GCAGC 1 cut(s) 700
Bsh1236I CGCG 1 cut(s) 131
Bsh1285I CGRYCG 1 cut(s) 110
BshFI GGCC 5 cut(s) 41, 117, 428, 737, 1076
BsiEI CGRYCG 1 cut(s) 110
BsiHKAI GWGCWC 1 cut(s) 547
BsiSI CCGG 1 cut(s) 809
BsnI GGCC 5 cut(s) 41, 117, 428, 737, 1076
Bsp119I TTCGAA 1 cut(s) 529
Bsp1286I GDGCHC 1 cut(s) 547
Bsp143I GATC 9 cut(s) 107, 138, 148, 165, 474, 492, 804, 949, 994
BspACI CCGC 3 cut(s) 129, 334, 1098
BspANI GGCC 5 cut(s) 41, 117, 428, 737, 1076
BspCNI CTCAG 4 cut(s) 58, 168, 445, 550
BspFNI CGCG 1 cut(s) 131
BspLI GGNNCC 1 cut(s) 806
BspMAI CTGCAG 2 cut(s) 285, 718
BspMI ACCTGC 3 cut(s) 367, 718, 1054
BspPI GGATC 5 cut(s) 156, 160, 799, 812, 944
BspT104I TTCGAA 1 cut(s) 529
BsrI ACTGG 3 cut(s) 99, 695, 830
BssECI CCNNGG 2 cut(s) 429, 738
BssMI GATC 9 cut(s) 107, 138, 148, 165, 474, 492, 804, 949, 994
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 354
BssT1I CCWWGG 1 cut(s) 429
Bst2BI CACGAG 1 cut(s) 354
Bst2UI CCWGG 1 cut(s) 740
Bst4CI ACNGT 2 cut(s) 215, 1009
BstACI GRCGYC 1 cut(s) 5
BstBI TTCGAA 1 cut(s) 529
BstC8I GCNNGC 2 cut(s) 648, 983
BstDEI CTNAG 5 cut(s) 66, 155, 453, 558, 869
BstF5I GGATG 3 cut(s) 226, 271, 328
BstFNI CGCG 1 cut(s) 131
BstHHI GCGC 1 cut(s) 133
BstKTI GATC 9 cut(s) 110, 141, 151, 168, 477, 495, 807, 952, 997
BstMBI GATC 9 cut(s) 107, 138, 148, 165, 474, 492, 804, 949, 994
BstMCI CGRYCG 1 cut(s) 110
BstMWI GCNNNNNNNGC 3 cut(s) 434, 449, 1010
BstNI CCWGG 1 cut(s) 740
BstSCI CCNGG 2 cut(s) 738, 807
BstSFI CTRYAG 2 cut(s) 281, 714
BstUI CGCG 1 cut(s) 131
BstV1I GCAGC 1 cut(s) 700
BstV2I GAAGAC 1 cut(s) 506
BstX2I RGATCY 2 cut(s) 165, 804
BstYI RGATCY 2 cut(s) 165, 804
BsuRI GGCC 5 cut(s) 41, 117, 428, 737, 1076
BtsCI GGATG 3 cut(s) 226, 271, 328
BtsIMutI CAGTG 4 cut(s) 92, 823, 837, 1005
BveI ACCTGC 3 cut(s) 367, 718, 1054
Cac8I GCNNGC 2 cut(s) 648, 983
CfoI GCGC 1 cut(s) 133
Cfr13I GGNCC 3 cut(s) 40, 116, 736
Csp6I GTAC 1 cut(s) 909
CviAII CATG 9 cut(s) 274, 350, 623, 630, 701, 779, 857, 923, 1022
CviQI GTAC 1 cut(s) 909
DdeI CTNAG 5 cut(s) 66, 155, 453, 558, 869
DpnI GATC 9 cut(s) 109, 140, 150, 167, 476, 494, 806, 951, 996
DpnII GATC 9 cut(s) 107, 138, 148, 165, 474, 492, 804, 949, 994
Eco130I CCWWGG 1 cut(s) 429
Eco147I AGGCCT 2 cut(s) 428, 1076
Eco57I CTGAAG 2 cut(s) 57, 155
EcoO109I RGGNCCY 1 cut(s) 736
EcoRII CCWGG 1 cut(s) 738
EcoT14I CCWWGG 1 cut(s) 429
ErhI CCWWGG 1 cut(s) 429
FaeI CATG 9 cut(s) 277, 353, 626, 633, 704, 782, 860, 926, 1025
FatI CATG 9 cut(s) 273, 349, 622, 629, 700, 778, 856, 922, 1021
FauI CCCGC 1 cut(s) 327
FauNDI CATATG 1 cut(s) 988
FbaI TGATCA 1 cut(s) 994
Fnu4HI GCNGC 1 cut(s) 714
FokI GGATG 3 cut(s) 233, 278, 335
Fsp4HI GCNGC 1 cut(s) 714
FspBI CTAG 1 cut(s) 44
GlaI GCGC 1 cut(s) 132
GluI GCNGC 1 cut(s) 714
GsuI CTGGAG 2 cut(s) 287, 761
HaeIII GGCC 5 cut(s) 41, 117, 428, 737, 1076
HapII CCGG 1 cut(s) 809
HhaI GCGC 1 cut(s) 133
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 9 cut(s) 277, 353, 626, 633, 704, 782, 860, 926, 1025
Hin6I GCGC 1 cut(s) 131
HinP1I GCGC 1 cut(s) 131
HincII GTYRAC 1 cut(s) 382
HindII GTYRAC 1 cut(s) 382
HindIII AAGCTT 1 cut(s) 888
HinfI GANTC 5 cut(s) 22, 122, 296, 727, 842
HpaII CCGG 1 cut(s) 809
HphI GGTGA 2 cut(s) 374, 736
Hpy166II GTNNAC 2 cut(s) 259, 382
Hpy188I TCNGA 4 cut(s) 107, 112, 265, 732
Hpy188III TCNNGA 5 cut(s) 19, 304, 478, 496, 962
Hpy8I GTNNAC 2 cut(s) 259, 382
HpyAV CCTTC 2 cut(s) 727, 1159
HpyCH4III ACNGT 2 cut(s) 215, 1009
HpyCH4IV ACGT 2 cut(s) 468, 541
HpyCH4V TGCA 6 cut(s) 283, 353, 629, 716, 862, 1013
HpyF10VI GCNNNNNNNGC 3 cut(s) 434, 449, 1010
HpyF3I CTNAG 5 cut(s) 66, 155, 453, 558, 869
HpySE526I ACGT 2 cut(s) 468, 541
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 9 cut(s) 277, 353, 626, 633, 704, 782, 860, 926, 1025
HspAI GCGC 1 cut(s) 131
Ksp22I TGATCA 1 cut(s) 994
Kzo9I GATC 9 cut(s) 107, 138, 148, 165, 474, 492, 804, 949, 994
LmnI GCTCC 1 cut(s) 922
Lsp1109I GCAGC 1 cut(s) 700
LweI GCATC 1 cut(s) 1136
MaeI CTAG 1 cut(s) 44
MaeII ACGT 2 cut(s) 468, 541
MalI GATC 9 cut(s) 109, 140, 150, 167, 476, 494, 806, 951, 996
MboI GATC 9 cut(s) 107, 138, 148, 165, 474, 492, 804, 949, 994
MboII GAAGA 8 cut(s) 95, 148, 175, 250, 469, 472, 511, 575
MflI RGATCY 2 cut(s) 165, 804
MhlI GDGCHC 1 cut(s) 547
MluCI AATT 5 cut(s) 57, 179, 365, 398, 525
MmeI TCCRAC 1 cut(s) 126
MseI TTAA 5 cut(s) 201, 390, 549, 611, 792
MslI CAYNNNNRTG 1 cut(s) 254
MspI CCGG 1 cut(s) 809
MspR9I CCNGG 2 cut(s) 740, 809
MvaI CCWGG 1 cut(s) 740
MvnI CGCG 1 cut(s) 131
MwoI GCNNNNNNNGC 3 cut(s) 434, 449, 1010
NciI CCSGG 1 cut(s) 809
NdeI CATATG 1 cut(s) 988
NdeII GATC 9 cut(s) 107, 138, 148, 165, 474, 492, 804, 949, 994
NlaIII CATG 9 cut(s) 277, 353, 626, 633, 704, 782, 860, 926, 1025
NlaIV GGNNCC 1 cut(s) 806
NspV TTCGAA 1 cut(s) 529
PceI AGGCCT 2 cut(s) 428, 1076
PfeI GAWTC 5 cut(s) 22, 122, 296, 727, 842
PkrI GCNGC 1 cut(s) 715
Ple19I CGATCG 1 cut(s) 110
PsiI TTATAA 1 cut(s) 894
Psp6I CCWGG 1 cut(s) 738
PspGI CCWGG 1 cut(s) 738
PspN4I GGNNCC 1 cut(s) 806
PspPI GGNCC 3 cut(s) 40, 116, 736
PstI CTGCAG 2 cut(s) 285, 718
PsuI RGATCY 2 cut(s) 165, 804
PvuI CGATCG 1 cut(s) 110
RsaI GTAC 1 cut(s) 910
RsaNI GTAC 1 cut(s) 909
RseI CAYNNNNRTG 1 cut(s) 254
SaqAI TTAA 5 cut(s) 201, 390, 549, 611, 792
SatI GCNGC 1 cut(s) 714
Sau3AI GATC 9 cut(s) 107, 138, 148, 165, 474, 492, 804, 949, 994
Sau96I GGNCC 3 cut(s) 40, 116, 736
ScrFI CCNGG 2 cut(s) 740, 809
SduI GDGCHC 1 cut(s) 547
SfaNI GCATC 1 cut(s) 1136
SfcI CTRYAG 2 cut(s) 281, 714
SfuI TTCGAA 1 cut(s) 529
SmiMI CAYNNNNRTG 1 cut(s) 254
SmlI CTYRAG 1 cut(s) 753
SmoI CTYRAG 1 cut(s) 753
Sse9I AATT 5 cut(s) 57, 179, 365, 398, 525
SseBI AGGCCT 2 cut(s) 428, 1076
SsiI CCGC 3 cut(s) 129, 334, 1098
SspMI CTAG 1 cut(s) 44
StuI AGGCCT 2 cut(s) 428, 1076
StyD4I CCNGG 2 cut(s) 738, 807
StyI CCWWGG 1 cut(s) 429
TaaI ACNGT 2 cut(s) 215, 1009
TaiI ACGT 2 cut(s) 471, 544
TaqI TCGA 5 cut(s) 141, 161, 177, 495, 529
TaqII GACCGA 1 cut(s) 19
TasI AATT 5 cut(s) 57, 179, 365, 398, 525
TatI WGTACW 1 cut(s) 908
TfiI GAWTC 5 cut(s) 22, 122, 296, 727, 842
Tru1I TTAA 5 cut(s) 201, 390, 549, 611, 792
Tru9I TTAA 5 cut(s) 201, 390, 549, 611, 792
TscAI CASTG 4 cut(s) 99, 830, 837, 1012
TseI GCWGC 1 cut(s) 713
TspDTI ATGAA 4 cut(s) 525, 611, 644, 1141
TspRI CASTG 4 cut(s) 99, 830, 837, 1012
XapI RAATTY 2 cut(s) 179, 525
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.