Prupe.1G455000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0007104
Physical Location & Seq
Reverse (-)
38212532 .. 38217988
5457 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G455000.2

Sequence Viewer

Length: 1347 bp
ATGGCGGCCTCAAAGCTCGCGATTCTGTCAATTTTTCTAGCCCTAATTTTCTCTCAGATTAGGGCTGATGTTTCTGTGCAAGGAGAAGAAGACGCGCCACTGAAGCCCGTCCGATCGGACGGCCCTGATTCGTCCGCTCTGAAGATCGAGTTGGATCAGCTCAAGTCTAAGATCCACACCCTTGAATTCGACGTGGATGCGAAGATTAAAGAACTCAAAAAGAAGAATGAGATAATAGAACAAAAGGAGAAAATCATTCAAGAGAACTCGAATAGCATTTCTTCTTTGCAGAGTGAAATCGAGTCTCTCCAGAAAAAAGGGTCATTAGATGCTGAGAAGCAGGTTGGAAAGGCTCATGCACGTGCTGGTGAATTAGAGAAGAAGGTTGCTGAACTTAAAAAGGAATTAGAATCGCAACATAAAGAGAAAGAGGCCTTGGAAGCCAGGGCAAAAAATGCCGAGACGAAGATTGATGTTTTGATCTTAAAAATAGAGAATATTGAGAAGATTAGTGATGACCAAAAGACTAAAATCCGTAAAACTGAGCGCGCTCTTAAAGTTGCTGAGGAAGAAATGTTGAAGGCAAAGTTTGAAGCTACTTCAAAAGCAAAAGAGTTAAAGGAGGTAGTTCATGGTGCATGGCTTCCACCATGGCTTGCTGTACATTTAATCCATTGTCAGTCCCTTGTAGAGACACATTGGAATGAGCATGGCAAACCAGCAGTGGATATTGCGGTTCAGAAGGCCCTGGAGAAAAAAGCCCAAGCTGAAAAGTGGGCTGAACCCCACGTGGAAACATTTAAAACTAAATATATCCCAGCAATCAAGGAACAGTGGGTGGTGGTGAAAGAATCTGTTGAACCCCATGTGAAATCGTTAAGTACGAAAACTGTTGAAGTTTATGAGACGTCAAAGAGTACATTAGCTCCACATGTTCTAAAAGCACAAGAAGTTGTAGATCCTTATTTTCAGGAAGCAAAAAAGTTCAGCAAGCCATATGTTGATCAAGTGGCGACTGTAGCAAAACCCCATGTTGACAAAGTTCGAGTTGTATTGAAGCCCTATACAAAGAAGGCAGTTCATGCCTACGAGAAGTTTCTCAAATCTGCGTCAACGTACCATCATCAGGTTCAAGCCAAAGTAAAAGATTTGCTGAAGAGGCATGAGCTGACAAGAGCCCTTGCTACAAAGGAGTTGGAGTGGTTTGCGGCCTCTGCTTTGTTGGCCCTACCCATCATATTTCTGTTCAGAATTTTCTCCTCGCTTTTCTGTACAAAGTCTAAGAAACCTGTTCGAAGTACCAACCATACACGTCGTAAGTCTAAAAGGGTTCATCCGGACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

449

Amino Acids

50.87

Weight (kDa)

9.42

Isoelectric Point (pI)

29.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 911
Acc36I ACCTGC 1 cut(s) 331
AccBSI CCGCTC 1 cut(s) 137
AccII CGCG 3 cut(s) 20, 95, 549
AccIII TCCGGA 1 cut(s) 1336
AciI CCGC 4 cut(s) 5, 135, 734, 1208
AclWI GGATC 3 cut(s) 162, 166, 953
AcsI RAATTY 2 cut(s) 185, 1251
AcuI CTGAAG 3 cut(s) 122, 161, 1175
AcvI CACGTG 2 cut(s) 362, 790
AcyI GRCGYC 1 cut(s) 908
AfaI GTAC 6 cut(s) 663, 883, 919, 1118, 1273, 1300
AfiI CCNNNNNNNGG 1 cut(s) 1126
AflIII ACRYGT 2 cut(s) 931, 1310
AgsI TTSAA 9 cut(s) 185, 260, 580, 593, 603, 860, 896, 1057, 1133
AjiI CACGTC 2 cut(s) 193, 1313
AjnI CCWGG 2 cut(s) 443, 747
AjuI GAANNNNNNNTTGG 4 cut(s) 134, 166, 419, 451
AluBI AGCT 6 cut(s) 16, 160, 596, 767, 926, 1168
AluI AGCT 6 cut(s) 16, 160, 596, 767, 926, 1168
Alw26I GTCTC 4 cut(s) 309, 455, 686, 899
AlwI GGATC 3 cut(s) 162, 166, 953
Aor13HI TCCGGA 1 cut(s) 1336
AoxI GGCC 6 cut(s) 6, 121, 432, 744, 1209, 1224
ApoI RAATTY 2 cut(s) 185, 1251
AspLEI GCGC 3 cut(s) 97, 549, 551
AspS9I GGNCC 3 cut(s) 122, 745, 1225
AsuHPI GGTGA 2 cut(s) 380, 856
AsuII TTCGAA 1 cut(s) 1294
BanII GRGCYC 1 cut(s) 1180
BbrPI CACGTG 2 cut(s) 362, 790
BbsI GAAGAC 1 cut(s) 96
BbvCI CCTCAGC 1 cut(s) 564
BccI CCATC 2 cut(s) 1128, 1241
BceAI ACGGC 1 cut(s) 136
BcgI CGANNNNNNTGC 2 cut(s) 179, 213
BciT130I CCWGG 2 cut(s) 445, 749
BclI TGATCA 1 cut(s) 1003
BcoDI GTCTC 4 cut(s) 309, 455, 686, 899
BfaI CTAG 1 cut(s) 38
BfmI CTRYAG 1 cut(s) 1017
BfuAI ACCTGC 1 cut(s) 331
BisI GCNGC 2 cut(s) 6, 1209
BlsI GCNGC 2 cut(s) 7, 1210
Bme1390I CCNGG 2 cut(s) 445, 749
BmgBI CACGTC 2 cut(s) 193, 1313
BmgT120I GGNCC 3 cut(s) 122, 745, 1225
BmrFI CCNGG 2 cut(s) 445, 749
BmsI GCATC 2 cut(s) 187, 319
BpiI GAAGAC 1 cut(s) 96
BpmI CTGGAG 2 cut(s) 293, 770
Bpu10I CCTNAGC 1 cut(s) 564
Bpu14I TTCGAA 1 cut(s) 1294
BpuEI CTTGAG 1 cut(s) 146
BsaAI YACGTR 2 cut(s) 362, 790
BsaHI GRCGYC 1 cut(s) 908
BsaJI CCNNGG 4 cut(s) 435, 444, 650, 747
BsaWI WCCGGW 1 cut(s) 1336
BsaXI ACNNNNNCTCC 4 cut(s) 910, 940, 1184, 1214
Bsc4I CCNNNNNNNGG 1 cut(s) 1126
BseAI TCCGGA 1 cut(s) 1336
BseBI CCWGG 2 cut(s) 445, 749
BseDI CCNNGG 4 cut(s) 435, 444, 650, 747
BseGI GGATG 2 cut(s) 202, 1333
BseLI CCNNNNNNNGG 1 cut(s) 1126
BseMII CTCAG 4 cut(s) 68, 324, 534, 555
BsePI GCGCGC 1 cut(s) 547
BseRI GAGGAG 1 cut(s) 1249
BseYI CCCAGC 1 cut(s) 817
Bsh1236I CGCG 3 cut(s) 20, 95, 549
Bsh1285I CGRYCG 1 cut(s) 116
BshFI GGCC 6 cut(s) 8, 123, 434, 746, 1211, 1226
BsiEI CGRYCG 1 cut(s) 116
BsiSI CCGG 1 cut(s) 1337
BslFI GGGAC 1 cut(s) 667
BslI CCNNNNNNNGG 1 cut(s) 1126
BsmAI GTCTC 4 cut(s) 309, 455, 686, 899
BsmBI CGTCTC 2 cut(s) 455, 899
BsmFI GGGAC 1 cut(s) 667
BsnI GGCC 6 cut(s) 8, 123, 434, 746, 1211, 1226
Bsp119I TTCGAA 1 cut(s) 1294
Bsp1286I GDGCHC 1 cut(s) 1180
Bsp13I TCCGGA 1 cut(s) 1336
Bsp1407I TGTACA 2 cut(s) 661, 1271
Bsp143I GATC 7 cut(s) 113, 144, 154, 171, 480, 958, 1003
Bsp19I CCATGG 1 cut(s) 650
Bsp68I TCGCGA 1 cut(s) 20
BspACI CCGC 4 cut(s) 5, 135, 734, 1208
BspANI GGCC 6 cut(s) 8, 123, 434, 746, 1211, 1226
BspCNI CTCAG 4 cut(s) 67, 325, 535, 556
BspEI TCCGGA 1 cut(s) 1336
BspFNI CGCG 3 cut(s) 20, 95, 549
BspMI ACCTGC 1 cut(s) 331
BspPI GGATC 3 cut(s) 162, 166, 953
BspT104I TTCGAA 1 cut(s) 1294
BsrBI CCGCTC 1 cut(s) 137
BsrGI TGTACA 2 cut(s) 661, 1271
BssECI CCNNGG 4 cut(s) 435, 444, 650, 747
BssHII GCGCGC 1 cut(s) 547
BssMI GATC 7 cut(s) 113, 144, 154, 171, 480, 958, 1003
BssNI GRCGYC 1 cut(s) 908
BssT1I CCWWGG 2 cut(s) 435, 650
Bst2UI CCWGG 2 cut(s) 445, 749
Bst4CI ACNGT 3 cut(s) 834, 892, 1018
Bst6I CTCTTC 1 cut(s) 1151
BstACI GRCGYC 1 cut(s) 908
BstAPI GCANNNNNTGC 2 cut(s) 455, 1082
BstAUI TGTACA 2 cut(s) 661, 1271
BstBAI YACGTR 2 cut(s) 362, 790
BstBI TTCGAA 1 cut(s) 1294
BstC8I GCNNGC 4 cut(s) 18, 549, 657, 992
BstDEI CTNAG 6 cut(s) 54, 168, 333, 543, 564, 1281
BstDSI CCRYGG 1 cut(s) 650
BstF5I GGATG 2 cut(s) 202, 1333
BstFNI CGCG 3 cut(s) 20, 95, 549
BstHHI GCGC 3 cut(s) 97, 549, 551
BstKTI GATC 7 cut(s) 116, 147, 157, 174, 483, 961, 1006
BstMAI GTCTC 4 cut(s) 309, 455, 686, 899
BstMBI GATC 7 cut(s) 113, 144, 154, 171, 480, 958, 1003
BstMCI CGRYCG 1 cut(s) 116
BstMWI GCNNNNNNNGC 8 cut(s) 103, 440, 455, 1019, 1082, 1159, 1214, 1223
BstNI CCWGG 2 cut(s) 445, 749
BstNSI RCATGY 1 cut(s) 935
BstSCI CCNGG 2 cut(s) 443, 747
BstSFI CTRYAG 1 cut(s) 1017
BstUI CGCG 3 cut(s) 20, 95, 549
BstV2I GAAGAC 1 cut(s) 96
BstX2I RGATCY 2 cut(s) 171, 958
BstYI RGATCY 2 cut(s) 171, 958
BsuRI GGCC 6 cut(s) 8, 123, 434, 746, 1211, 1226
BtgI CCRYGG 1 cut(s) 650
BtrI CACGTC 2 cut(s) 193, 1313
BtsCI GGATG 2 cut(s) 202, 1333
BtsI GCAGTG 1 cut(s) 729
BtsIMutI CAGTG 3 cut(s) 98, 729, 839
BtuMI TCGCGA 1 cut(s) 20
BveI ACCTGC 1 cut(s) 331
Cac8I GCNNGC 4 cut(s) 18, 549, 657, 992
CfoI GCGC 3 cut(s) 97, 549, 551
Cfr13I GGNCC 3 cut(s) 122, 745, 1225
CseI GACGC 2 cut(s) 101, 1098
Csp6I GTAC 6 cut(s) 662, 882, 918, 1117, 1272, 1299
CviQI GTAC 6 cut(s) 662, 882, 918, 1117, 1272, 1299
DdeI CTNAG 6 cut(s) 54, 168, 333, 543, 564, 1281
DpnI GATC 7 cut(s) 115, 146, 156, 173, 482, 960, 1005
DpnII GATC 7 cut(s) 113, 144, 154, 171, 480, 958, 1003
DraI TTTAAA 1 cut(s) 802
Eam1104I CTCTTC 1 cut(s) 1151
EarI CTCTTC 1 cut(s) 1151
Eco130I CCWWGG 2 cut(s) 435, 650
Eco147I AGGCCT 1 cut(s) 434
Eco24I GRGCYC 1 cut(s) 1180
Eco57I CTGAAG 3 cut(s) 122, 161, 1175
Eco72I CACGTG 2 cut(s) 362, 790
EcoO109I RGGNCCY 1 cut(s) 745
EcoRI GAATTC 1 cut(s) 185
EcoRII CCWGG 2 cut(s) 443, 747
EcoT14I CCWWGG 2 cut(s) 435, 650
EcoT38I GRGCYC 1 cut(s) 1180
ErhI CCWWGG 2 cut(s) 435, 650
Esp3I CGTCTC 2 cut(s) 455, 899
FaqI GGGAC 1 cut(s) 667
FauNDI CATATG 1 cut(s) 997
FbaI TGATCA 1 cut(s) 1003
Fnu4HI GCNGC 2 cut(s) 6, 1209
FokI GGATG 2 cut(s) 209, 1320
FriOI GRGCYC 1 cut(s) 1180
Fsp4HI GCNGC 2 cut(s) 6, 1209
FspBI CTAG 1 cut(s) 38
GlaI GCGC 3 cut(s) 96, 548, 550
GluI GCNGC 2 cut(s) 6, 1209
GsaI CCCAGC 1 cut(s) 821
GsuI CTGGAG 2 cut(s) 293, 770
HaeIII GGCC 6 cut(s) 8, 123, 434, 746, 1211, 1226
HapII CCGG 1 cut(s) 1337
HgaI GACGC 2 cut(s) 101, 1098
HhaI GCGC 3 cut(s) 97, 549, 551
Hin1I GRCGYC 1 cut(s) 908
Hin6I GCGC 3 cut(s) 95, 547, 549
HinP1I GCGC 3 cut(s) 95, 547, 549
HincII GTYRAC 2 cut(s) 1036, 1113
HindII GTYRAC 2 cut(s) 1036, 1113
HinfI GANTC 5 cut(s) 22, 128, 302, 410, 851
HpaII CCGG 1 cut(s) 1337
HphI GGTGA 2 cut(s) 380, 856
Hpy166II GTNNAC 2 cut(s) 1036, 1113
Hpy188I TCNGA 6 cut(s) 57, 113, 118, 141, 741, 1250
Hpy188III TCNNGA 5 cut(s) 19, 260, 310, 971, 1337
Hpy8I GTNNAC 2 cut(s) 1036, 1113
Hpy99I CGWCG 2 cut(s) 194, 1317
HpyAV CCTTC 4 cut(s) 376, 574, 736, 1066
HpyCH4III ACNGT 3 cut(s) 834, 892, 1018
HpyCH4IV ACGT 6 cut(s) 192, 361, 789, 908, 1115, 1312
HpyCH4V TGCA 4 cut(s) 79, 289, 359, 638
HpyF10VI GCNNNNNNNGC 8 cut(s) 103, 440, 455, 1019, 1082, 1159, 1214, 1223
HpyF3I CTNAG 6 cut(s) 54, 168, 333, 543, 564, 1281
HpySE526I ACGT 6 cut(s) 192, 361, 789, 908, 1115, 1312
Hsp92I GRCGYC 1 cut(s) 908
HspAI GCGC 3 cut(s) 95, 547, 549
Kpn2I TCCGGA 1 cut(s) 1336
Ksp22I TGATCA 1 cut(s) 1003
Kzo9I GATC 7 cut(s) 113, 144, 154, 171, 480, 958, 1003
LmnI GCTCC 1 cut(s) 931
LweI GCATC 2 cut(s) 187, 319
MaeI CTAG 1 cut(s) 38
MaeII ACGT 6 cut(s) 192, 361, 789, 908, 1115, 1312
MalI GATC 7 cut(s) 115, 146, 156, 173, 482, 960, 1005
MbiI CCGCTC 1 cut(s) 137
MboI GATC 7 cut(s) 113, 144, 154, 171, 480, 958, 1003
MflI RGATCY 2 cut(s) 171, 958
MhlI GDGCHC 1 cut(s) 1180
MluCI AATT 6 cut(s) 30, 45, 185, 371, 404, 1251
MlyI GAGTC 1 cut(s) 311
MmeI TCCRAC 3 cut(s) 132, 325, 1176
MnlI CCTC 7 cut(s) 19, 424, 559, 616, 1152, 1222, 1270
MroI TCCGGA 1 cut(s) 1336
MseI TTAA 8 cut(s) 207, 396, 485, 555, 617, 668, 801, 878
MslI CAYNNNNRTG 2 cut(s) 360, 702
MspI CCGG 1 cut(s) 1337
MspR9I CCNGG 2 cut(s) 445, 749
MvaI CCWGG 2 cut(s) 445, 749
MvnI CGCG 3 cut(s) 20, 95, 549
MwoI GCNNNNNNNGC 8 cut(s) 103, 440, 455, 1019, 1082, 1159, 1214, 1223
NcoI CCATGG 1 cut(s) 650
NdeI CATATG 1 cut(s) 997
NdeII GATC 7 cut(s) 113, 144, 154, 171, 480, 958, 1003
NmeAIII GCCGAG 1 cut(s) 484
NruI TCGCGA 1 cut(s) 20
NspI RCATGY 1 cut(s) 935
NspV TTCGAA 1 cut(s) 1294
PauI GCGCGC 1 cut(s) 547
PceI AGGCCT 1 cut(s) 434
PciI ACATGT 1 cut(s) 931
PcsI WCGNNNNNNNCGW 1 cut(s) 881
PfeI GAWTC 4 cut(s) 22, 128, 410, 851
PkrI GCNGC 2 cut(s) 7, 1210
Ple19I CGATCG 1 cut(s) 116
PleI GAGTC 1 cut(s) 310
PmaCI CACGTG 2 cut(s) 362, 790
PmlI CACGTG 2 cut(s) 362, 790
PpsI GAGTC 1 cut(s) 310
Ppu21I YACGTR 2 cut(s) 362, 790
PscI ACATGT 1 cut(s) 931
Psp6I CCWGG 2 cut(s) 443, 747
PspCI CACGTG 2 cut(s) 362, 790
PspFI CCCAGC 1 cut(s) 817
PspGI CCWGG 2 cut(s) 443, 747
PspPI GGNCC 3 cut(s) 122, 745, 1225
PsuI RGATCY 2 cut(s) 171, 958
PteI GCGCGC 1 cut(s) 547
PvuI CGATCG 1 cut(s) 116
RruI TCGCGA 1 cut(s) 20
RsaI GTAC 6 cut(s) 663, 883, 919, 1118, 1273, 1300
RsaNI GTAC 6 cut(s) 662, 882, 918, 1117, 1272, 1299
RseI CAYNNNNRTG 2 cut(s) 360, 702
SaqAI TTAA 8 cut(s) 207, 396, 485, 555, 617, 668, 801, 878
SatI GCNGC 2 cut(s) 6, 1209
Sau3AI GATC 7 cut(s) 113, 144, 154, 171, 480, 958, 1003
Sau96I GGNCC 3 cut(s) 122, 745, 1225
SchI GAGTC 1 cut(s) 311
ScrFI CCNGG 2 cut(s) 445, 749
SduI GDGCHC 1 cut(s) 1180
SfaNI GCATC 2 cut(s) 187, 319
SfcI CTRYAG 1 cut(s) 1017
SfuI TTCGAA 1 cut(s) 1294
SmiMI CAYNNNNRTG 2 cut(s) 360, 702
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
Sse9I AATT 6 cut(s) 30, 45, 185, 371, 404, 1251
SseBI AGGCCT 1 cut(s) 434
SsiI CCGC 4 cut(s) 5, 135, 734, 1208
SspI AATATT 1 cut(s) 499
SspMI CTAG 1 cut(s) 38
StuI AGGCCT 1 cut(s) 434
StyD4I CCNGG 2 cut(s) 443, 747
StyI CCWWGG 2 cut(s) 435, 650
TaaI ACNGT 3 cut(s) 834, 892, 1018
TaiI ACGT 6 cut(s) 195, 364, 792, 911, 1118, 1315
TaqI TCGA 6 cut(s) 147, 189, 269, 300, 1045, 1294
TasI AATT 6 cut(s) 30, 45, 185, 371, 404, 1251
TatI WGTACW 3 cut(s) 661, 917, 1271
TauI GCSGC 2 cut(s) 8, 1211
TfiI GAWTC 4 cut(s) 22, 128, 410, 851
Tru1I TTAA 8 cut(s) 207, 396, 485, 555, 617, 668, 801, 878
Tru9I TTAA 8 cut(s) 207, 396, 485, 555, 617, 668, 801, 878
TscAI CASTG 3 cut(s) 105, 729, 839
TspDTI ATGAA 3 cut(s) 620, 1070, 1322
TspGWI ACGGA 1 cut(s) 524
TspRI CASTG 3 cut(s) 105, 729, 839
XapI RAATTY 2 cut(s) 185, 1251
XceI RCATGY 1 cut(s) 935
XspI CTAG 1 cut(s) 38
ZraI GACGTC 1 cut(s) 909
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.