Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007104

Physical Location & Seq

Genomic Coordinates Forward (+)

49185971 .. 49189586

Gene Structure 3616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0341200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGACTGAATCTGTTACTGCACTTTTCATTGGTCTTTGTACTGGGATTTTAATTCTAGTAACAACCAAGGGGAAAAGCTCACACCTCTTTGTATTTGATGAACATCTTTTCTTCGTATATCTTCTGCCGCCTATTATATTTAAAGCCGGAATCCAGGTGAAAAAAAAGCAGTTTTTCCAGAACTTTATCGCAATCTCCTTGTTGGGTGCAGTTGGCAGTTTGATATCATTTGTTATTATATGGCTGGGTACGACGTTCTTATTCAAAAACTTGGACATTGGTTTCCTTGAGATCAAGGATTATCTTGCACTAGGAGCTATCTTCTCGGCTACAGATACTGTTTGCACCCTGCAGGTGCTTAATCAAGATGAGACACCTTTACTGTACAGTCTAGTCTTTGGAGAAGGTGTTGTAAATGATGCTACATCTGTGGTACTCTTCAATGCAATCCAGCGGCACTCTACTGATCATGAAGTTCAACTGATGATTCTAATGGCTTATCTTTCATACATGGCAGAACTATTTGATCTAAGCAGCATTCTTACTGTTTTCTTTTGTGGGATTGTCTTGTCACACTACACCTGGCATAATGTAACTGAAAAATCTCGTGTTACAACCAAGCATGGCTTTGCAACACTGTCATTTATTTCAGAGATTTTCATCTTTCTTCCTGGGAAATCAATTGGGGTCAGTTCAATATTACTTCTCCTGGTTCTGGTTGGAAGAGCAACTTCTGTATTTCCTCTGTGTTTCCTTTCAAACTTAACTAGGAAATCTCAGAGTGACAAAATTGGGTTTAAGCAGCAGATAACAGTATGGTGGGCTGGACTCATGCGAGGTGCCGTATCTGTGGCTCTAGCTTATAACTGGTTTACAATGTCAGGGCATACTAAACAGGTTGGAAATGCTATTATGATCACCAGTACAATTACAGTAGTTCTCTTCACTAATGTGGTGTGTGGATTACTGACAAAGCCTCTTATGAGGTTCTTGTTACCGCAACTTAAACAATCGAGTAACATAATGTCCTCGGAATTATCATCTGAGATGTCTCTAGTTCTACCTGTCCTCACTAATAGGGAAGATCCAAAACAGGACAGCATGTCTGAGAGTGATCGCCATCCACCTAATCTGTGTATGCTCTTGACAAGACCAACTCGATCGTTACATTATTATTTGCGAATGTTTGATGATTCCTTCATGCGTCCTGTATTTGGGGGTAGAGGATTTGTTCCACATATTTCTTCACCAAACCAAAGTTCTCTTGATGAACGGTTACTTCCAGAACAGCATACGATAGTAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

435

Amino Acids

48.63

Weight (kDa)

7.69

Isoelectric Point (pI)

43.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	3 - 151	5e-19	Sodium/hydrogen exchanger, transmembrane
Na_H_Exchanger	PF00999	154 - 329	1.6e-18	Sodium/hydrogen exchanger, transmembrane

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24420 AT2G24420 AT4G31340 AT4G31340
fragaria_vesca	FvH4_2g36360 FvH4_2g36360 FvH4_2g36360
malus_domestica	MD08G1121400.v1.1 MD15G1100200.v1.1 MD15G1100300.v1.1
prunus_persica	Prupe.1G455000_v2.0.a1 Prupe.1G455000_v2.0.a1
pyrus_communis	pycom08g10130 pycom15g09230 pycom15g09240 pycom15g09290
rosa_chinensis	RchiOBHm_Chr6g0305521
rosa_laevigata	RLG00000010880
rosa_roxburghii	Rroxscaffold_7G00162620
rosa_rugosa	Rorug06G0341200
rosa_samantha	Rh6AG453300 Rh6BG448400 Rh6CG467100 Rh6DG453700
rosa_wichuraiana	Rw6G039500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	864
AarI	CACCTGC	1 cut(s)	343
Acc36I	ACCTGC	1 cut(s)	343
AccB1I	GGYRCC	1 cut(s)	839
AciI	CCGC	3 cut(s)	128, 454, 998
AclWI	GGATC	1 cut(s)	1079
AfaI	GTAC	5 cut(s)	40, 250, 386, 435, 925
AfiI	CCNNNNNNNGG	2 cut(s)	715, 1214
AgsI	TTSAA	5 cut(s)	265, 442, 479, 696, 759
AhdI	GACNNNNNGTC	1 cut(s)	1102
AjnI	CCWGG	4 cut(s)	153, 581, 670, 708
AjuI	GAANNNNNNNTTGG	2 cut(s)	1243, 1275
AleI	CACNNNNGTG	1 cut(s)	950
AluBI	AGCT	3 cut(s)	78, 317, 860
AluI	AGCT	3 cut(s)	78, 317, 860
Alw26I	GTCTC	2 cut(s)	365, 1056
AlwI	GGATC	1 cut(s)	1079
AlwNI	CAGNNNCTG	1 cut(s)	338
ApeKI	GCWGC	2 cut(s)	534, 802
AsuHPI	GGTGA	3 cut(s)	169, 910, 1239
BanI	GGYRCC	1 cut(s)	839
BauI	CACGAG	1 cut(s)	606
BbvI	GCAGC	2 cut(s)	546, 814
BccI	CCATC	1 cut(s)	1128
BceAI	ACGGC	1 cut(s)	827
BciT130I	CCWGG	4 cut(s)	155, 583, 672, 710
BclI	TGATCA	2 cut(s)	466, 915
BcoDI	GTCTC	2 cut(s)	365, 1056
BfaI	CTAG	6 cut(s)	56, 311, 392, 768, 857, 1055
BfmI	CTRYAG	2 cut(s)	330, 350
BfuAI	ACCTGC	1 cut(s)	343
BisI	GCNGC	4 cut(s)	128, 455, 535, 803
BlsI	GCNGC	4 cut(s)	129, 456, 536, 804
Bme1390I	CCNGG	4 cut(s)	155, 583, 672, 710
BmeRI	GACNNNNNGTC	1 cut(s)	1102
BmiI	GGNNCC	1 cut(s)	841
BmrFI	CCNGG	4 cut(s)	155, 583, 672, 710
BmrI	ACTGGG	1 cut(s)	51
BmsI	GCATC	1 cut(s)	409
BmuI	ACTGGG	1 cut(s)	51
BpuEI	CTTGAG	1 cut(s)	308
BsaBI	GATNNNNATC	3 cut(s)	102, 659, 1119
BsaJI	CCNNGG	3 cut(s)	66, 671, 1029
BsaXI	ACNNNNNCTCC	2 cut(s)	393, 423
Bsc4I	CCNNNNNNNGG	2 cut(s)	715, 1214
Bse1I	ACTGG	3 cut(s)	46, 872, 921
Bse8I	GATNNNNATC	3 cut(s)	102, 659, 1119
BseBI	CCWGG	4 cut(s)	155, 583, 672, 710
BseDI	CCNNGG	3 cut(s)	66, 671, 1029
BseGI	GGATG	1 cut(s)	1120
BseJI	GATNNNNATC	3 cut(s)	102, 659, 1119
BseLI	CCNNNNNNNGG	2 cut(s)	715, 1214
BseMII	CTCAG	3 cut(s)	791, 1035, 1098
BseNI	ACTGG	3 cut(s)	46, 872, 921
BseXI	GCAGC	2 cut(s)	546, 814
BseYI	CCCAGC	1 cut(s)	244
BsgI	GTGCAG	1 cut(s)	228
Bsh1285I	CGRYCG	1 cut(s)	1163
BshNI	GGYRCC	1 cut(s)	839
BsiEI	CGRYCG	1 cut(s)	1163
BsiSI	CCGG	1 cut(s)	147
BslI	CCNNNNNNNGG	2 cut(s)	715, 1214
BsmAI	GTCTC	2 cut(s)	365, 1056
BsmI	GAATGC	1 cut(s)	537
Bsp1407I	TGTACA	1 cut(s)	384
Bsp143I	GATC	7 cut(s)	291, 466, 526, 915, 1084, 1114, 1160
BspACI	CCGC	3 cut(s)	128, 454, 998
BspCNI	CTCAG	3 cut(s)	790, 1036, 1099
BspHI	TCATGA	1 cut(s)	469
BspLI	GGNNCC	1 cut(s)	841
BspMAI	CTGCAG	1 cut(s)	354
BspMI	ACCTGC	1 cut(s)	343
BspPI	GGATC	1 cut(s)	1079
BspQI	GCTCTTC	1 cut(s)	718
BspT107I	GGYRCC	1 cut(s)	839
BsrGI	TGTACA	1 cut(s)	384
BsrI	ACTGG	3 cut(s)	46, 872, 921
BssECI	CCNNGG	3 cut(s)	66, 671, 1029
BssMI	GATC	7 cut(s)	291, 466, 526, 915, 1084, 1114, 1160
BssSI	CACGAG	1 cut(s)	606
BssT1I	CCWWGG	1 cut(s)	66
Bst2BI	CACGAG	1 cut(s)	606
Bst2UI	CCWGG	4 cut(s)	155, 583, 672, 710
Bst4CI	ACNGT	8 cut(s)	340, 384, 389, 547, 639, 814, 934, 1275
Bst6I	CTCTTC	3 cut(s)	443, 718, 947
BstAUI	TGTACA	1 cut(s)	384
BstDEI	CTNAG	4 cut(s)	530, 777, 1044, 1107
BstF5I	GGATG	1 cut(s)	1120
BstKTI	GATC	7 cut(s)	294, 469, 529, 918, 1087, 1117, 1163
BstMAI	GTCTC	2 cut(s)	365, 1056
BstMBI	GATC	7 cut(s)	291, 466, 526, 915, 1084, 1114, 1160
BstMCI	CGRYCG	1 cut(s)	1163
BstMWI	GCNNNNNNNGC	1 cut(s)	314
BstNI	CCWGG	4 cut(s)	155, 583, 672, 710
BstNSI	RCATGY	1 cut(s)	1105
BstSCI	CCNGG	4 cut(s)	153, 581, 670, 708
BstSFI	CTRYAG	2 cut(s)	330, 350
BstV1I	GCAGC	2 cut(s)	546, 814
BstX2I	RGATCY	1 cut(s)	1084
BstYI	RGATCY	1 cut(s)	1084
BtsCI	GGATG	1 cut(s)	1120
BtsIMutI	CAGTG	1 cut(s)	635
BveI	ACCTGC	1 cut(s)	343
CaiI	CAGNNNCTG	1 cut(s)	338
CciI	TCATGA	1 cut(s)	469
CseI	GACGC	1 cut(s)	1193
Csp6I	GTAC	5 cut(s)	39, 249, 385, 434, 924
CviAII	CATG	6 cut(s)	470, 511, 623, 832, 1102, 1201
CviQI	GTAC	5 cut(s)	39, 249, 385, 434, 924
DdeI	CTNAG	4 cut(s)	530, 777, 1044, 1107
DpnI	GATC	7 cut(s)	293, 468, 528, 917, 1086, 1116, 1162
DpnII	GATC	7 cut(s)	291, 466, 526, 915, 1084, 1114, 1160
DraI	TTTAAA	1 cut(s)	142
DriI	GACNNNNNGTC	1 cut(s)	1102
Eam1104I	CTCTTC	3 cut(s)	443, 718, 947
Eam1105I	GACNNNNNGTC	1 cut(s)	1102
EarI	CTCTTC	3 cut(s)	443, 718, 947
Eco130I	CCWWGG	1 cut(s)	66
Eco32I	GATATC	1 cut(s)	225
EcoRII	CCWGG	4 cut(s)	153, 581, 670, 708
EcoRV	GATATC	1 cut(s)	225
EcoT14I	CCWWGG	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	66
FaeI	CATG	6 cut(s)	473, 514, 626, 835, 1105, 1204
FalI	AAGNNNNNCTT	4 cut(s)	611, 643, 715, 747
FatI	CATG	6 cut(s)	469, 510, 622, 831, 1101, 1200
FbaI	TGATCA	2 cut(s)	466, 915
Fnu4HI	GCNGC	4 cut(s)	128, 455, 535, 803
FokI	GGATG	1 cut(s)	1107
Fsp4HI	GCNGC	4 cut(s)	128, 455, 535, 803
FspBI	CTAG	6 cut(s)	56, 311, 392, 768, 857, 1055
GluI	GCNGC	4 cut(s)	128, 455, 535, 803
GsaI	CCCAGC	1 cut(s)	248
HapII	CCGG	1 cut(s)	147
HgaI	GACGC	1 cut(s)	1193
Hin1II	CATG	6 cut(s)	473, 514, 626, 835, 1105, 1204
HinfI	GANTC	5 cut(s)	8, 150, 487, 828, 1193
HpaII	CCGG	1 cut(s)	147
HphI	GGTGA	3 cut(s)	169, 910, 1239
Hpy166II	GTNNAC	1 cut(s)	873
Hpy188I	TCNGA	5 cut(s)	652, 780, 1033, 1045, 1108
Hpy188III	TCNNGA	6 cut(s)	178, 365, 470, 1144, 1265, 1283
Hpy8I	GTNNAC	1 cut(s)	873
Hpy99I	CGWCG	1 cut(s)	256
HpyAV	CCTTC	2 cut(s)	398, 1207
HpyCH4III	ACNGT	8 cut(s)	340, 384, 389, 547, 639, 814, 934, 1275
HpyCH4IV	ACGT	1 cut(s)	254
HpyCH4V	TGCA	7 cut(s)	20, 209, 308, 345, 352, 446, 632
HpyF10VI	GCNNNNNNNGC	1 cut(s)	314
HpyF3I	CTNAG	4 cut(s)	530, 777, 1044, 1107
HpySE526I	ACGT	1 cut(s)	254
Hsp92II	CATG	6 cut(s)	473, 514, 626, 835, 1105, 1204
Ksp22I	TGATCA	2 cut(s)	466, 915
Kzo9I	GATC	7 cut(s)	291, 466, 526, 915, 1084, 1114, 1160
LguI	GCTCTTC	1 cut(s)	718
LmnI	GCTCC	1 cut(s)	314
Lsp1109I	GCAGC	2 cut(s)	546, 814
LweI	GCATC	1 cut(s)	409
MaeI	CTAG	6 cut(s)	56, 311, 392, 768, 857, 1055
MaeII	ACGT	1 cut(s)	254
MalI	GATC	7 cut(s)	293, 468, 528, 917, 1086, 1116, 1162
MboI	GATC	7 cut(s)	291, 466, 526, 915, 1084, 1114, 1160
MboII	GAAGA	9 cut(s)	103, 113, 313, 430, 659, 735, 934, 1094, 1236
MfeI	CAATTG	1 cut(s)	681
MflI	RGATCY	1 cut(s)	1084
MluCI	AATT	5 cut(s)	51, 681, 789, 927, 1034
MlyI	GAGTC	1 cut(s)	822
MmeI	TCCRAC	2 cut(s)	700, 880
MnlI	CCTC	8 cut(s)	95, 753, 830, 978, 987, 1039, 1079, 1217
MseI	TTAA	6 cut(s)	50, 141, 360, 764, 798, 1005
MslI	CAYNNNNRTG	1 cut(s)	950
MspA1I	CMGCKG	1 cut(s)	454
MspI	CCGG	1 cut(s)	147
MspR9I	CCNGG	4 cut(s)	155, 583, 672, 710
MunI	CAATTG	1 cut(s)	681
Mva1269I	GAATGC	1 cut(s)	537
MvaI	CCWGG	4 cut(s)	155, 583, 672, 710
MwoI	GCNNNNNNNGC	1 cut(s)	314
NdeII	GATC	7 cut(s)	291, 466, 526, 915, 1084, 1114, 1160
NlaIII	CATG	6 cut(s)	473, 514, 626, 835, 1105, 1204
NlaIV	GGNNCC	1 cut(s)	841
NmeAIII	GCCGAG	1 cut(s)	305
NmuCI	GTSAC	2 cut(s)	570, 782
NspI	RCATGY	1 cut(s)	1105
OliI	CACNNNNGTG	1 cut(s)	950
PagI	TCATGA	1 cut(s)	469
PaqCI	CACCTGC	1 cut(s)	343
PciSI	GCTCTTC	1 cut(s)	718
PctI	GAATGC	1 cut(s)	537
PfeI	GAWTC	4 cut(s)	8, 150, 487, 1193
PkrI	GCNGC	4 cut(s)	129, 456, 536, 804
Ple19I	CGATCG	1 cut(s)	1163
PleI	GAGTC	1 cut(s)	822
PpsI	GAGTC	1 cut(s)	822
PsiI	TTATAA	1 cut(s)	864
Psp6I	CCWGG	4 cut(s)	153, 581, 670, 708
PspFI	CCCAGC	1 cut(s)	244
PspGI	CCWGG	4 cut(s)	153, 581, 670, 708
PspN4I	GGNNCC	1 cut(s)	841
PstI	CTGCAG	1 cut(s)	354
PstNI	CAGNNNCTG	1 cut(s)	338
PsuI	RGATCY	1 cut(s)	1084
PvuI	CGATCG	1 cut(s)	1163
RsaI	GTAC	5 cut(s)	40, 250, 386, 435, 925
RsaNI	GTAC	5 cut(s)	39, 249, 385, 434, 924
RseI	CAYNNNNRTG	1 cut(s)	950
SapI	GCTCTTC	1 cut(s)	718
SaqAI	TTAA	6 cut(s)	50, 141, 360, 764, 798, 1005
SatI	GCNGC	4 cut(s)	128, 455, 535, 803
Sau3AI	GATC	7 cut(s)	291, 466, 526, 915, 1084, 1114, 1160
SbfI	CCTGCAGG	1 cut(s)	354
SchI	GAGTC	1 cut(s)	822
ScrFI	CCNGG	4 cut(s)	155, 583, 672, 710
SdaI	CCTGCAGG	1 cut(s)	354
SfaNI	GCATC	1 cut(s)	409
SfcI	CTRYAG	2 cut(s)	330, 350
SmiMI	CAYNNNNRTG	1 cut(s)	950
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
Sse8387I	CCTGCAGG	1 cut(s)	354
Sse9I	AATT	5 cut(s)	51, 681, 789, 927, 1034
SsiI	CCGC	3 cut(s)	128, 454, 998
SspI	AATATT	1 cut(s)	699
SspMI	CTAG	6 cut(s)	56, 311, 392, 768, 857, 1055
StyD4I	CCNGG	4 cut(s)	153, 581, 670, 708
StyI	CCWWGG	1 cut(s)	66
TaaI	ACNGT	8 cut(s)	340, 384, 389, 547, 639, 814, 934, 1275
TaiI	ACGT	1 cut(s)	257
TaqI	TCGA	2 cut(s)	1013, 1159
TasI	AATT	5 cut(s)	51, 681, 789, 927, 1034
TatI	WGTACW	3 cut(s)	38, 384, 923
TauI	GCSGC	2 cut(s)	130, 457
TfiI	GAWTC	4 cut(s)	8, 150, 487, 1193
Tru1I	TTAA	6 cut(s)	50, 141, 360, 764, 798, 1005
Tru9I	TTAA	6 cut(s)	50, 141, 360, 764, 798, 1005
TscAI	CASTG	1 cut(s)	642
TseFI	GTSAC	2 cut(s)	570, 782
TseI	GCWGC	2 cut(s)	534, 802
Tsp45I	GTSAC	2 cut(s)	570, 782
TspDTI	ATGAA	7 cut(s)	16, 114, 486, 495, 649, 1189, 1284
TspRI	CASTG	1 cut(s)	642
XceI	RCATGY	1 cut(s)	1105
XspI	CTAG	6 cut(s)	56, 311, 392, 768, 857, 1055

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.