Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0007104

Physical Location & Seq

Genomic Coordinates Reverse (-)

6970277 .. 6973288

Gene Structure 3012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1100300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGCAGGTTAACGAACTTGAAAAAGAATTACAAATGCAACATAATGAGAAAGGGGACTTGAAAGACCAGGTAAATGAAGTTGAGAAGATGGATGATTTGCTTTCAAAAATAGAGAATGTTAACGAACTTGAAAAGGAATTACAATTGCAACGTAATGAGAAAAGGGACTTGAAAGACAGGGTAAATGAAGCTGAGAAAAAGATCGATGATTTGTTTTCAAAAATAGAGAATGTTAACGAACTTGAAAAGGAATTACAATCGCAACGTAATGAGAAAGGGGACTTGAAAGACCGGGTAAATGAAGCTGAGAAGAAGATGGATGATTTGCTTTCAAAAATAGAGAACGCTCTGGAGAAAAAAGCCCAAGCTGAAAAGTGGGCTGAACCCCATGTCGAAACAACAAAAACTAAATGGATCCCGGCAATAAAGGAACAATGGGTGGTGGTGAAGGATACTGTTGAACTTCATGTGATATCGTTAAGTAATAAAAGTATTGAAGTTTATGAGGTTTCAAAGACTACATTAGCTCCACATGTTATAAAAGCACAAGAAGTAGTTGATATTTATTTTCAGGAAGCAAAAAAGTTCAGCAAGCCATATGTTGATCAGCTGACCACTGTGACAAAACCTCATGTCGATAAGGCAGTTATTGCCTACGAGAAGTTTCTCAAATCTGCATCAACATACCATCATCAGGTTCAAGGGACAGTAAAAGATTTGCTGAAGAGGCATGAACTGACAAGACCTCTTGCTACAAAGGAGTTGGAGTGGTTTGCGGCCTCGGCTTTGGTGGCCCTGCTCATCATAATTCAGTTCAGAATTTTCTCCTCACTTTTCTGTACAAAGACTAAAAAACCTGTTCCAGGTACCAACCATGCGCGTCGTAAGGCTAAAAGGTGCCATCCAGAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

305

Amino Acids

35.37

Weight (kDa)

7.73

Isoelectric Point (pI)

29.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24420 AT2G24420 AT4G31340 AT4G31340
fragaria_vesca	FvH4_2g36360 FvH4_2g36360 FvH4_2g36360
malus_domestica	MD08G1121400.v1.1 MD15G1100200.v1.1 MD15G1100300.v1.1
prunus_persica	Prupe.1G455000_v2.0.a1 Prupe.1G455000_v2.0.a1
pyrus_communis	pycom08g10130 pycom15g09230 pycom15g09240 pycom15g09290
rosa_chinensis	RchiOBHm_Chr6g0305521
rosa_laevigata	RLG00000010880
rosa_roxburghii	Rroxscaffold_7G00162620
rosa_rugosa	Rorug06G0341200
rosa_samantha	Rh6AG453300 Rh6BG448400 Rh6CG467100 Rh6DG453700
rosa_wichuraiana	Rw6G039500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	539
Acc65I	GGTACC	1 cut(s)	866
AccB1I	GGYRCC	2 cut(s)	866, 897
AccII	CGCG	1 cut(s)	880
AciI	CCGC	1 cut(s)	776
AclWI	GGATC	2 cut(s)	409, 422
AcsI	RAATTY	1 cut(s)	819
AcuI	CTGAAG	1 cut(s)	743
AfaI	GTAC	2 cut(s)	841, 868
AfiI	CCNNNNNNNGG	2 cut(s)	694, 863
AflIII	ACRYGT	1 cut(s)	532
AjnI	CCWGG	2 cut(s)	66, 862
AluBI	AGCT	5 cut(s)	191, 305, 368, 527, 610
AluI	AGCT	5 cut(s)	191, 305, 368, 527, 610
AlwI	GGATC	2 cut(s)	409, 422
AoxI	GGCC	2 cut(s)	777, 792
ApoI	RAATTY	1 cut(s)	819
Asp718I	GGTACC	1 cut(s)	866
AspLEI	GCGC	1 cut(s)	880
AspS9I	GGNCC	1 cut(s)	793
AsuC2I	CCSGG	2 cut(s)	293, 419
AsuHPI	GGTGA	1 cut(s)	457
BamHI	GGATCC	1 cut(s)	414
BanI	GGYRCC	2 cut(s)	866, 897
BccI	CCATC	4 cut(s)	82, 310, 696, 909
BciT130I	CCWGG	2 cut(s)	68, 864
BciVI	GTATCC	1 cut(s)	445
BclI	TGATCA	1 cut(s)	604
BcnI	CCSGG	2 cut(s)	293, 419
BfuI	GTATCC	1 cut(s)	445
BisI	GCNGC	1 cut(s)	777
BlsI	GCNGC	1 cut(s)	778
Bme1390I	CCNGG	4 cut(s)	68, 293, 419, 864
BmgT120I	GGNCC	1 cut(s)	793
BmiI	GGNNCC	3 cut(s)	416, 868, 899
BmrFI	CCNGG	4 cut(s)	68, 293, 419, 864
BmsI	GCATC	1 cut(s)	686
BpmI	CTGGAG	1 cut(s)	371
BpuMI	CCSGG	2 cut(s)	293, 419
Bsa29I	ATCGAT	1 cut(s)	204
BsaJI	CCNNGG	1 cut(s)	780
BsaXI	ACNNNNNCTCC	4 cut(s)	511, 541, 752, 782
Bsc4I	CCNNNNNNNGG	2 cut(s)	694, 863
BseBI	CCWGG	2 cut(s)	68, 864
BseCI	ATCGAT	1 cut(s)	204
BseDI	CCNNGG	1 cut(s)	780
BseGI	GGATG	3 cut(s)	97, 325, 901
BseLI	CCNNNNNNNGG	2 cut(s)	694, 863
BseMII	CTCAG	2 cut(s)	183, 297
BseRI	GAGGAG	1 cut(s)	817
Bsh1236I	CGCG	1 cut(s)	880
BshFI	GGCC	2 cut(s)	779, 794
BshNI	GGYRCC	2 cut(s)	866, 897
BshVI	ATCGAT	1 cut(s)	204
BsiSI	CCGG	2 cut(s)	292, 419
BslFI	GGGAC	4 cut(s)	68, 179, 293, 718
BslI	CCNNNNNNNGG	2 cut(s)	694, 863
BsmFI	GGGAC	4 cut(s)	68, 179, 293, 718
BsnI	GGCC	2 cut(s)	779, 794
Bsp1407I	TGTACA	1 cut(s)	839
Bsp143I	GATC	3 cut(s)	201, 414, 604
BspACI	CCGC	1 cut(s)	776
BspANI	GGCC	2 cut(s)	779, 794
BspCNI	CTCAG	2 cut(s)	184, 298
BspDI	ATCGAT	1 cut(s)	204
BspFNI	CGCG	1 cut(s)	880
BspLI	GGNNCC	3 cut(s)	416, 868, 899
BspPI	GGATC	2 cut(s)	409, 422
BspT107I	GGYRCC	2 cut(s)	866, 897
BsrGI	TGTACA	1 cut(s)	839
BssECI	CCNNGG	1 cut(s)	780
BssMI	GATC	3 cut(s)	201, 414, 604
Bst2UI	CCWGG	2 cut(s)	68, 864
Bst4CI	ACNGT	3 cut(s)	457, 619, 709
Bst6I	CTCTTC	1 cut(s)	719
BstAPI	GCANNNNNTGC	1 cut(s)	650
BstAUI	TGTACA	1 cut(s)	839
BstC8I	GCNNGC	1 cut(s)	593
BstDEI	CTNAG	2 cut(s)	192, 306
BstENI	CCTNNNNNAGG	1 cut(s)	861
BstF5I	GGATG	3 cut(s)	97, 325, 901
BstFNI	CGCG	1 cut(s)	880
BstHHI	GCGC	1 cut(s)	880
BstKTI	GATC	3 cut(s)	204, 417, 607
BstMBI	GATC	3 cut(s)	201, 414, 604
BstMWI	GCNNNNNNNGC	4 cut(s)	650, 727, 782, 791
BstNI	CCWGG	2 cut(s)	68, 864
BstNSI	RCATGY	1 cut(s)	536
BstSCI	CCNGG	4 cut(s)	66, 291, 417, 862
BstUI	CGCG	1 cut(s)	880
BstX2I	RGATCY	1 cut(s)	414
BstYI	RGATCY	1 cut(s)	414
Bsu15I	ATCGAT	1 cut(s)	204
BsuI	GTATCC	1 cut(s)	445
BsuRI	GGCC	2 cut(s)	779, 794
BsuTUI	ATCGAT	1 cut(s)	204
BtsCI	GGATG	3 cut(s)	97, 325, 901
BtsIMutI	CAGTG	1 cut(s)	615
Cac8I	GCNNGC	1 cut(s)	593
CfoI	GCGC	1 cut(s)	880
Cfr13I	GGNCC	1 cut(s)	793
ClaI	ATCGAT	1 cut(s)	204
CseI	GACGC	1 cut(s)	869
CsiI	ACCWGGT	1 cut(s)	66
Csp6I	GTAC	2 cut(s)	840, 867
CviAII	CATG	6 cut(s)	389, 467, 533, 632, 731, 875
CviQI	GTAC	2 cut(s)	840, 867
DdeI	CTNAG	2 cut(s)	192, 306
DpnI	GATC	3 cut(s)	203, 416, 606
DpnII	GATC	3 cut(s)	201, 414, 604
Eam1104I	CTCTTC	1 cut(s)	719
EarI	CTCTTC	1 cut(s)	719
Eco32I	GATATC	1 cut(s)	474
Eco57I	CTGAAG	1 cut(s)	743
EcoNI	CCTNNNNNAGG	1 cut(s)	861
EcoRII	CCWGG	2 cut(s)	66, 862
EcoRV	GATATC	1 cut(s)	474
FaeI	CATG	6 cut(s)	392, 470, 536, 635, 734, 878
FaqI	GGGAC	4 cut(s)	68, 179, 293, 718
FatI	CATG	6 cut(s)	388, 466, 532, 631, 730, 874
FauNDI	CATATG	1 cut(s)	598
FbaI	TGATCA	1 cut(s)	604
Fnu4HI	GCNGC	1 cut(s)	777
FokI	GGATG	3 cut(s)	104, 332, 888
Fsp4HI	GCNGC	1 cut(s)	777
GlaI	GCGC	1 cut(s)	879
GluI	GCNGC	1 cut(s)	777
GsuI	CTGGAG	1 cut(s)	371
HaeIII	GGCC	2 cut(s)	779, 794
HapII	CCGG	2 cut(s)	292, 419
HgaI	GACGC	1 cut(s)	869
HhaI	GCGC	1 cut(s)	880
Hin1II	CATG	6 cut(s)	392, 470, 536, 635, 734, 878
Hin6I	GCGC	1 cut(s)	878
HinP1I	GCGC	1 cut(s)	878
HincII	GTYRAC	3 cut(s)	10, 121, 235
HindII	GTYRAC	3 cut(s)	10, 121, 235
HpaI	GTTAAC	3 cut(s)	10, 121, 235
HpaII	CCGG	2 cut(s)	292, 419
HphI	GGTGA	1 cut(s)	457
Hpy166II	GTNNAC	3 cut(s)	10, 121, 235
Hpy188I	TCNGA	1 cut(s)	818
Hpy188III	TCNNGA	3 cut(s)	350, 572, 905
Hpy8I	GTNNAC	3 cut(s)	10, 121, 235
Hpy99I	CGWCG	1 cut(s)	885
HpyAV	CCTTC	1 cut(s)	442
HpyCH4III	ACNGT	3 cut(s)	457, 619, 709
HpyCH4IV	ACGT	2 cut(s)	151, 265
HpyCH4V	TGCA	4 cut(s)	4, 37, 148, 677
HpyF10VI	GCNNNNNNNGC	4 cut(s)	650, 727, 782, 791
HpyF3I	CTNAG	2 cut(s)	192, 306
HpySE526I	ACGT	2 cut(s)	151, 265
Hsp92II	CATG	6 cut(s)	392, 470, 536, 635, 734, 878
HspAI	GCGC	1 cut(s)	878
KpnI	GGTACC	1 cut(s)	870
Ksp22I	TGATCA	1 cut(s)	604
KspAI	GTTAAC	3 cut(s)	10, 121, 235
Kzo9I	GATC	3 cut(s)	201, 414, 604
LmnI	GCTCC	1 cut(s)	532
LweI	GCATC	1 cut(s)	686
MabI	ACCWGGT	1 cut(s)	66
MaeII	ACGT	2 cut(s)	151, 265
MaeIII	GTNAC	1 cut(s)	619
MalI	GATC	3 cut(s)	203, 416, 606
MboI	GATC	3 cut(s)	201, 414, 604
MboII	GAAGA	4 cut(s)	97, 322, 325, 736
MfeI	CAATTG	1 cut(s)	143
MflI	RGATCY	1 cut(s)	414
MluCI	AATT	6 cut(s)	26, 137, 143, 251, 807, 819
MmeI	TCCRAC	1 cut(s)	744
MnlI	CCTC	6 cut(s)	499, 639, 720, 756, 790, 838
MseI	TTAA	4 cut(s)	9, 120, 234, 479
MspA1I	CMGCKG	1 cut(s)	610
MspI	CCGG	2 cut(s)	292, 419
MspR9I	CCNGG	4 cut(s)	68, 293, 419, 864
MunI	CAATTG	1 cut(s)	143
MvaI	CCWGG	2 cut(s)	68, 864
MvnI	CGCG	1 cut(s)	880
MwoI	GCNNNNNNNGC	4 cut(s)	650, 727, 782, 791
NciI	CCSGG	2 cut(s)	293, 419
NdeI	CATATG	1 cut(s)	598
NdeII	GATC	3 cut(s)	201, 414, 604
NlaIII	CATG	6 cut(s)	392, 470, 536, 635, 734, 878
NlaIV	GGNNCC	3 cut(s)	416, 868, 899
NmeAIII	GCCGAG	1 cut(s)	761
NmuCI	GTSAC	1 cut(s)	619
NspI	RCATGY	1 cut(s)	536
PciI	ACATGT	1 cut(s)	532
PkrI	GCNGC	1 cut(s)	778
PscI	ACATGT	1 cut(s)	532
PsiI	TTATAA	1 cut(s)	539
Psp6I	CCWGG	2 cut(s)	66, 862
PspGI	CCWGG	2 cut(s)	66, 862
PspN4I	GGNNCC	3 cut(s)	416, 868, 899
PspPI	GGNCC	1 cut(s)	793
PsuI	RGATCY	1 cut(s)	414
PvuII	CAGCTG	1 cut(s)	610
RsaI	GTAC	2 cut(s)	841, 868
RsaNI	GTAC	2 cut(s)	840, 867
SaqAI	TTAA	4 cut(s)	9, 120, 234, 479
SatI	GCNGC	1 cut(s)	777
Sau3AI	GATC	3 cut(s)	201, 414, 604
Sau96I	GGNCC	1 cut(s)	793
ScrFI	CCNGG	4 cut(s)	68, 293, 419, 864
SexAI	ACCWGGT	1 cut(s)	66
SfaNI	GCATC	1 cut(s)	686
Sse9I	AATT	6 cut(s)	26, 137, 143, 251, 807, 819
SsiI	CCGC	1 cut(s)	776
StyD4I	CCNGG	4 cut(s)	66, 291, 417, 862
TaaI	ACNGT	3 cut(s)	457, 619, 709
TaiI	ACGT	2 cut(s)	154, 268
TaqI	TCGA	3 cut(s)	204, 393, 636
TasI	AATT	6 cut(s)	26, 137, 143, 251, 807, 819
TatI	WGTACW	1 cut(s)	839
TauI	GCSGC	1 cut(s)	779
Tru1I	TTAA	4 cut(s)	9, 120, 234, 479
Tru9I	TTAA	4 cut(s)	9, 120, 234, 479
TscAI	CASTG	1 cut(s)	622
TseFI	GTSAC	1 cut(s)	619
Tsp45I	GTSAC	1 cut(s)	619
TspDTI	ATGAA	5 cut(s)	90, 201, 315, 455, 747
TspRI	CASTG	1 cut(s)	622
XagI	CCTNNNNNAGG	1 cut(s)	861
XapI	RAATTY	1 cut(s)	819
XceI	RCATGY	1 cut(s)	536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.