Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0007104

Physical Location & Seq

Genomic Coordinates Reverse (-)

5038885 .. 5043026

Gene Structure 4142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010880

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGCGTCCTCAAAGCTCTTGATTCTCTCGGTCTTTCTGGCCTTAGTTTTCTCGCAAATTAGGGCTGAGGCTTCAGTCAAAGAAGATGAGCCACTGGAAGTAGTCCGATCGAACGGCCCTGATTCGTCCGCGCTGAAGATCGAGTTGGATCAACTCAGGTCGAAGATCCACTCGCTCGAATTTGAAGTGGAGGAGAAAGTTAAGCAACTTCACAGTAAGGATGAGATGGTAGAACAGAAGAATAAAATCATTCAAGTGAACTCGGATGTCATCATGGCTCTGCAGAAAGAAGTTGATTCTCTCCAGAAAAAAGGGTCGCTGGATGTTGAGAAGCAGGTTGGCGAGGCTCATGCACGAGCTGGTGAATTAGAGAAGCAGGTTGACAAACTTAAAAAGGAATTGGAAGCACAACATAAGGAGAAAGAGGCCCTGGAAGCCCGTGCCAATCAAGCTGAGAAGAAGATTGACGTTTTGATCTTGAAAATAGATAAGATCGAGAAGACTAATGATGAACAAAAGACCAAAATTCGAAATACTGAGCGTGCTCTTAAAGTTGCTGAGGAAGAAATGTTGAGGGCAAAGTTTGAGGCTACTTCTAAAGCAAAAGCGTTAACAGAGGTTCATGGTGCATGGCTTCCACATTGGCTTGCTGTTCATTTCGGCTATTGTCAGTCCTTTGTAGAGAAATACTGGAATGAGCATGGAAAACCTGCTGCAGAGGTGGTGATTCAGAAGGCCCTGGAGAAAAAAGCTCAAGCTGCAAAGTGGGCTGAACCCCATGTGGAAGCAGTTAAAACTAAATGGATCCCGGCAGTCAAGGAACAGTGGTCAGTGGCAAAAGATTCTGTTGAACCTCATGTGCAATCACTAAGAACAAAGTCTATTGAAGCTTATAAGACGTCAAAGAGTACATTAGCTCCCCATGTTATAAAAGCACAAGAGTTTGTTGATCCTTACTTTCAGGAGGCAAAAAAGTTCAGCAAGCCATATGTTGATCAGGTAGCCACTGTTGCAAAACCTCATGTTGAAAAAGTTAGAGTGGTGTTGAAGCCCTATACAAAGCAGGTTGTTCAGGCCTACGAGAAGTTTCTCAAATCCGCTTCAACATATCATCATCAGGTATCAGCATCAATCTGGCAAAACCTACCCTTCATTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

387

Amino Acids

43.98

Weight (kDa)

8.91

Isoelectric Point (pI)

28.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24420 AT2G24420 AT4G31340 AT4G31340
fragaria_vesca	FvH4_2g36360 FvH4_2g36360 FvH4_2g36360
malus_domestica	MD08G1121400.v1.1 MD15G1100200.v1.1 MD15G1100300.v1.1
prunus_persica	Prupe.1G455000_v2.0.a1 Prupe.1G455000_v2.0.a1
pyrus_communis	pycom08g10130 pycom15g09230 pycom15g09240 pycom15g09290
rosa_chinensis	RchiOBHm_Chr6g0305521
rosa_laevigata	RLG00000010880
rosa_roxburghii	Rroxscaffold_7G00162620
rosa_rugosa	Rorug06G0341200
rosa_samantha	Rh6AG453300 Rh6BG448400 Rh6CG467100 Rh6DG453700
rosa_wichuraiana	Rw6G039500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	894, 929
AatII	GACGTC	1 cut(s)	902
Acc36I	ACCTGC	4 cut(s)	325, 367, 718, 1054
AccII	CGCG	1 cut(s)	131
AciI	CCGC	2 cut(s)	129, 1098
AclWI	GGATC	5 cut(s)	156, 160, 799, 812, 944
AcsI	RAATTY	2 cut(s)	179, 525
AcuI	CTGAAG	2 cut(s)	57, 155
AcyI	GRCGYC	2 cut(s)	5, 899
AfaI	GTAC	1 cut(s)	910
AgsI	TTSAA	8 cut(s)	185, 254, 481, 851, 887, 1028, 1048, 1104
AjnI	CCWGG	2 cut(s)	429, 738
AjuI	GAANNNNNNNTTGG	2 cut(s)	128, 160
AluBI	AGCT	7 cut(s)	16, 359, 452, 752, 758, 890, 917
AluI	AGCT	7 cut(s)	16, 359, 452, 752, 758, 890, 917
Alw21I	GWGCWC	1 cut(s)	547
AlwI	GGATC	5 cut(s)	156, 160, 799, 812, 944
AoxI	GGCC	5 cut(s)	39, 115, 426, 735, 1074
ApeKI	GCWGC	2 cut(s)	713, 758
ApoI	RAATTY	2 cut(s)	179, 525
AspLEI	GCGC	1 cut(s)	133
AspS9I	GGNCC	3 cut(s)	116, 427, 736
AsuC2I	CCSGG	1 cut(s)	809
AsuHPI	GGTGA	2 cut(s)	374, 736
AsuII	TTCGAA	1 cut(s)	529
BamHI	GGATCC	1 cut(s)	804
BauI	CACGAG	1 cut(s)	354
BbsI	GAAGAC	1 cut(s)	506
Bbv12I	GWGCWC	1 cut(s)	547
BbvCI	CCTCAGC	2 cut(s)	66, 558
BbvI	GCAGC	2 cut(s)	700, 745
BccI	CCATC	1 cut(s)	220
BceAI	ACGGC	1 cut(s)	130
BcgI	CGANNNNNNTGC	2 cut(s)	332, 366
BciT130I	CCWGG	2 cut(s)	431, 740
BclI	TGATCA	1 cut(s)	994
BcnI	CCSGG	1 cut(s)	809
BfmI	CTRYAG	2 cut(s)	281, 714
BfuAI	ACCTGC	4 cut(s)	325, 367, 718, 1054
BisI	GCNGC	2 cut(s)	714, 759
BlsI	GCNGC	2 cut(s)	715, 760
Bme1390I	CCNGG	3 cut(s)	431, 740, 809
BmgT120I	GGNCC	3 cut(s)	116, 427, 736
BmiI	GGNNCC	1 cut(s)	806
BmrFI	CCNGG	3 cut(s)	431, 740, 809
BmsI	GCATC	1 cut(s)	1136
BpiI	GAAGAC	1 cut(s)	506
BpmI	CTGGAG	2 cut(s)	287, 761
Bpu10I	CCTNAGC	2 cut(s)	66, 558
Bpu14I	TTCGAA	1 cut(s)	529
BpuEI	CTTGAG	1 cut(s)	738
BpuMI	CCSGG	1 cut(s)	809
BsaHI	GRCGYC	2 cut(s)	5, 899
BsaJI	CCNNGG	2 cut(s)	429, 738
BsaXI	ACNNNNNCTCC	2 cut(s)	901, 931
Bse1I	ACTGG	2 cut(s)	99, 695
BseBI	CCWGG	2 cut(s)	431, 740
BseDI	CCNNGG	2 cut(s)	429, 738
BseGI	GGATG	3 cut(s)	226, 271, 328
BseMII	CTCAG	5 cut(s)	57, 169, 444, 528, 549
BseNI	ACTGG	2 cut(s)	99, 695
BseRI	GAGGAG	1 cut(s)	206
BseXI	GCAGC	2 cut(s)	700, 745
Bsh1236I	CGCG	1 cut(s)	131
Bsh1285I	CGRYCG	1 cut(s)	110
BshFI	GGCC	5 cut(s)	41, 117, 428, 737, 1076
BsiEI	CGRYCG	1 cut(s)	110
BsiHKAI	GWGCWC	1 cut(s)	547
BsiSI	CCGG	1 cut(s)	809
BsnI	GGCC	5 cut(s)	41, 117, 428, 737, 1076
Bsp119I	TTCGAA	1 cut(s)	529
Bsp1286I	GDGCHC	1 cut(s)	547
Bsp143I	GATC	9 cut(s)	107, 138, 148, 165, 474, 492, 804, 949, 994
BspACI	CCGC	2 cut(s)	129, 1098
BspANI	GGCC	5 cut(s)	41, 117, 428, 737, 1076
BspCNI	CTCAG	5 cut(s)	58, 168, 445, 529, 550
BspFNI	CGCG	1 cut(s)	131
BspLI	GGNNCC	1 cut(s)	806
BspMAI	CTGCAG	2 cut(s)	285, 718
BspMI	ACCTGC	4 cut(s)	325, 367, 718, 1054
BspPI	GGATC	5 cut(s)	156, 160, 799, 812, 944
BspT104I	TTCGAA	1 cut(s)	529
BsrI	ACTGG	2 cut(s)	99, 695
BssECI	CCNNGG	2 cut(s)	429, 738
BssMI	GATC	9 cut(s)	107, 138, 148, 165, 474, 492, 804, 949, 994
BssNI	GRCGYC	2 cut(s)	5, 899
BssSI	CACGAG	1 cut(s)	354
Bst2BI	CACGAG	1 cut(s)	354
Bst2UI	CCWGG	2 cut(s)	431, 740
Bst4CI	ACNGT	3 cut(s)	215, 825, 1009
BstACI	GRCGYC	2 cut(s)	5, 899
BstBI	TTCGAA	1 cut(s)	529
BstC8I	GCNNGC	3 cut(s)	543, 648, 983
BstDEI	CTNAG	7 cut(s)	43, 66, 155, 453, 537, 558, 869
BstF5I	GGATG	3 cut(s)	226, 271, 328
BstFNI	CGCG	1 cut(s)	131
BstHHI	GCGC	1 cut(s)	133
BstKTI	GATC	9 cut(s)	110, 141, 151, 168, 477, 495, 807, 952, 997
BstMBI	GATC	9 cut(s)	107, 138, 148, 165, 474, 492, 804, 949, 994
BstMCI	CGRYCG	1 cut(s)	110
BstMWI	GCNNNNNNNGC	5 cut(s)	434, 449, 758, 767, 1010
BstNI	CCWGG	2 cut(s)	431, 740
BstSCI	CCNGG	3 cut(s)	429, 738, 807
BstSFI	CTRYAG	2 cut(s)	281, 714
BstUI	CGCG	1 cut(s)	131
BstV1I	GCAGC	2 cut(s)	700, 745
BstV2I	GAAGAC	1 cut(s)	506
BstX2I	RGATCY	2 cut(s)	165, 804
BstYI	RGATCY	2 cut(s)	165, 804
BsuRI	GGCC	5 cut(s)	41, 117, 428, 737, 1076
BtsCI	GGATG	3 cut(s)	226, 271, 328
BtsIMutI	CAGTG	4 cut(s)	92, 830, 837, 1005
BveI	ACCTGC	4 cut(s)	325, 367, 718, 1054
Cac8I	GCNNGC	3 cut(s)	543, 648, 983
CfoI	GCGC	1 cut(s)	133
Cfr13I	GGNCC	3 cut(s)	116, 427, 736
Csp6I	GTAC	1 cut(s)	909
CviAII	CATG	9 cut(s)	274, 350, 623, 630, 701, 779, 857, 923, 1022
CviQI	GTAC	1 cut(s)	909
DdeI	CTNAG	7 cut(s)	43, 66, 155, 453, 537, 558, 869
DpnI	GATC	9 cut(s)	109, 140, 150, 167, 476, 494, 806, 951, 996
DpnII	GATC	9 cut(s)	107, 138, 148, 165, 474, 492, 804, 949, 994
Eco147I	AGGCCT	1 cut(s)	1076
Eco57I	CTGAAG	2 cut(s)	57, 155
EcoO109I	RGGNCCY	2 cut(s)	427, 736
EcoRII	CCWGG	2 cut(s)	429, 738
FaeI	CATG	9 cut(s)	277, 353, 626, 633, 704, 782, 860, 926, 1025
FatI	CATG	9 cut(s)	273, 349, 622, 629, 700, 778, 856, 922, 1021
FauNDI	CATATG	1 cut(s)	988
FbaI	TGATCA	1 cut(s)	994
Fnu4HI	GCNGC	2 cut(s)	714, 759
FokI	GGATG	3 cut(s)	233, 278, 335
Fsp4HI	GCNGC	2 cut(s)	714, 759
GlaI	GCGC	1 cut(s)	132
GluI	GCNGC	2 cut(s)	714, 759
GsuI	CTGGAG	2 cut(s)	287, 761
HaeIII	GGCC	5 cut(s)	41, 117, 428, 737, 1076
HapII	CCGG	1 cut(s)	809
HhaI	GCGC	1 cut(s)	133
Hin1I	GRCGYC	2 cut(s)	5, 899
Hin1II	CATG	9 cut(s)	277, 353, 626, 633, 704, 782, 860, 926, 1025
Hin6I	GCGC	1 cut(s)	131
HinP1I	GCGC	1 cut(s)	131
HincII	GTYRAC	2 cut(s)	382, 612
HindII	GTYRAC	2 cut(s)	382, 612
HindIII	AAGCTT	1 cut(s)	888
HinfI	GANTC	5 cut(s)	22, 122, 296, 727, 842
HpaI	GTTAAC	1 cut(s)	612
HpaII	CCGG	1 cut(s)	809
HphI	GGTGA	2 cut(s)	374, 736
Hpy166II	GTNNAC	3 cut(s)	259, 382, 612
Hpy188I	TCNGA	3 cut(s)	107, 265, 732
Hpy188III	TCNNGA	5 cut(s)	19, 304, 478, 496, 962
Hpy8I	GTNNAC	3 cut(s)	259, 382, 612
HpyAV	CCTTC	2 cut(s)	727, 1159
HpyCH4III	ACNGT	3 cut(s)	215, 825, 1009
HpyCH4IV	ACGT	2 cut(s)	468, 899
HpyCH4V	TGCA	7 cut(s)	283, 353, 629, 716, 761, 862, 1013
HpyF10VI	GCNNNNNNNGC	5 cut(s)	434, 449, 758, 767, 1010
HpyF3I	CTNAG	7 cut(s)	43, 66, 155, 453, 537, 558, 869
HpySE526I	ACGT	2 cut(s)	468, 899
Hsp92I	GRCGYC	2 cut(s)	5, 899
Hsp92II	CATG	9 cut(s)	277, 353, 626, 633, 704, 782, 860, 926, 1025
HspAI	GCGC	1 cut(s)	131
Ksp22I	TGATCA	1 cut(s)	994
KspAI	GTTAAC	1 cut(s)	612
Kzo9I	GATC	9 cut(s)	107, 138, 148, 165, 474, 492, 804, 949, 994
LmnI	GCTCC	1 cut(s)	922
Lsp1109I	GCAGC	2 cut(s)	700, 745
LweI	GCATC	1 cut(s)	1136
MaeII	ACGT	2 cut(s)	468, 899
MalI	GATC	9 cut(s)	109, 140, 150, 167, 476, 494, 806, 951, 996
MboI	GATC	9 cut(s)	107, 138, 148, 165, 474, 492, 804, 949, 994
MboII	GAAGA	8 cut(s)	95, 148, 175, 250, 469, 472, 511, 575
MflI	RGATCY	2 cut(s)	165, 804
MhlI	GDGCHC	1 cut(s)	547
MluCI	AATT	5 cut(s)	57, 179, 365, 398, 525
MmeI	TCCRAC	1 cut(s)	126
MseI	TTAA	5 cut(s)	201, 390, 549, 611, 792
MslI	CAYNNNNRTG	1 cut(s)	254
MspI	CCGG	1 cut(s)	809
MspR9I	CCNGG	3 cut(s)	431, 740, 809
MvaI	CCWGG	2 cut(s)	431, 740
MvnI	CGCG	1 cut(s)	131
MwoI	GCNNNNNNNGC	5 cut(s)	434, 449, 758, 767, 1010
NciI	CCSGG	1 cut(s)	809
NdeI	CATATG	1 cut(s)	988
NdeII	GATC	9 cut(s)	107, 138, 148, 165, 474, 492, 804, 949, 994
NlaIII	CATG	9 cut(s)	277, 353, 626, 633, 704, 782, 860, 926, 1025
NlaIV	GGNNCC	1 cut(s)	806
NspV	TTCGAA	1 cut(s)	529
PceI	AGGCCT	1 cut(s)	1076
PfeI	GAWTC	5 cut(s)	22, 122, 296, 727, 842
PkrI	GCNGC	2 cut(s)	715, 760
Ple19I	CGATCG	1 cut(s)	110
PsiI	TTATAA	2 cut(s)	894, 929
Psp6I	CCWGG	2 cut(s)	429, 738
PspGI	CCWGG	2 cut(s)	429, 738
PspN4I	GGNNCC	1 cut(s)	806
PspPI	GGNCC	3 cut(s)	116, 427, 736
PstI	CTGCAG	2 cut(s)	285, 718
PsuI	RGATCY	2 cut(s)	165, 804
PvuI	CGATCG	1 cut(s)	110
RsaI	GTAC	1 cut(s)	910
RsaNI	GTAC	1 cut(s)	909
RseI	CAYNNNNRTG	1 cut(s)	254
SaqAI	TTAA	5 cut(s)	201, 390, 549, 611, 792
SatI	GCNGC	2 cut(s)	714, 759
Sau3AI	GATC	9 cut(s)	107, 138, 148, 165, 474, 492, 804, 949, 994
Sau96I	GGNCC	3 cut(s)	116, 427, 736
ScrFI	CCNGG	3 cut(s)	431, 740, 809
SduI	GDGCHC	1 cut(s)	547
SfaNI	GCATC	1 cut(s)	1136
SfcI	CTRYAG	2 cut(s)	281, 714
SfuI	TTCGAA	1 cut(s)	529
SmiMI	CAYNNNNRTG	1 cut(s)	254
SmlI	CTYRAG	1 cut(s)	753
SmoI	CTYRAG	1 cut(s)	753
Sse9I	AATT	5 cut(s)	57, 179, 365, 398, 525
SseBI	AGGCCT	1 cut(s)	1076
SsiI	CCGC	2 cut(s)	129, 1098
StuI	AGGCCT	1 cut(s)	1076
StyD4I	CCNGG	3 cut(s)	429, 738, 807
TaaI	ACNGT	3 cut(s)	215, 825, 1009
TaiI	ACGT	2 cut(s)	471, 902
TaqI	TCGA	6 cut(s)	110, 141, 161, 177, 495, 529
TaqII	GACCGA	1 cut(s)	19
TasI	AATT	5 cut(s)	57, 179, 365, 398, 525
TatI	WGTACW	1 cut(s)	908
TfiI	GAWTC	5 cut(s)	22, 122, 296, 727, 842
Tru1I	TTAA	5 cut(s)	201, 390, 549, 611, 792
Tru9I	TTAA	5 cut(s)	201, 390, 549, 611, 792
TscAI	CASTG	4 cut(s)	99, 830, 837, 1012
TseI	GCWGC	2 cut(s)	713, 758
TspDTI	ATGAA	4 cut(s)	525, 611, 644, 1141
TspRI	CASTG	4 cut(s)	99, 830, 837, 1012
XapI	RAATTY	2 cut(s)	179, 525
ZraI	GACGTC	1 cut(s)	900

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.