Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0007104

Physical Location & Seq

Genomic Coordinates Reverse (-)

5975179 .. 5975541

Gene Structure 363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g09240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGCGGCCTCCAAGCTTGCGATTCTCTCAGTCTTTCTTGCCCTAATTCTCTCCCAGATTCGGGCTGACGCTTCAGTCCCGGCGGAGGAAGACGAGCCAGTGAAGCTCCCTCGATCGGTCGGCCCTGATTCGTCCGCTCTGAAGATCGAGTTGGATCAGCTCAGGGCTAAGATCCACTCCCTAGGTTCGTTTCTATCGTCTTCTGCGAATTCTAGGGTTTATTGGACGAAATTTGTGATTTTTCAAGTGTTAGTGGATTCGATTTTTTCCTTTGGTTTTCTCGCCATACAAACAGATTTTACTAAAGTTAGAGATCCTTTGGTTTTTCAATTGGGAAGTGATTTAATTTCTTTCCATTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

121

Amino Acids

13.2

Weight (kDa)

6.05

Isoelectric Point (pI)

35.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24420 AT2G24420 AT4G31340 AT4G31340
fragaria_vesca	FvH4_2g36360 FvH4_2g36360 FvH4_2g36360
malus_domestica	MD08G1121400.v1.1 MD15G1100200.v1.1 MD15G1100300.v1.1
prunus_persica	Prupe.1G455000_v2.0.a1 Prupe.1G455000_v2.0.a1
pyrus_communis	pycom08g10130 pycom15g09230 pycom15g09240 pycom15g09290
rosa_chinensis	RchiOBHm_Chr6g0305521
rosa_laevigata	RLG00000010880
rosa_roxburghii	Rroxscaffold_7G00162620
rosa_rugosa	Rorug06G0341200
rosa_samantha	Rh6AG453300 Rh6BG448400 Rh6CG467100 Rh6DG453700
rosa_wichuraiana	Rw6G039500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	361
AasI	GACNNNNNNGTC	1 cut(s)	74
AccBSI	CCGCTC	1 cut(s)	137
AciI	CCGC	3 cut(s)	5, 83, 135
AclWI	GGATC	3 cut(s)	162, 166, 308
AcsI	RAATTY	2 cut(s)	208, 230
AcuI	CTGAAG	2 cut(s)	57, 161
AfiI	CCNNNNNNNGG	4 cut(s)	60, 61, 85, 115
AgsI	TTSAA	2 cut(s)	245, 329
AjuI	GAANNNNNNNTTGG	2 cut(s)	134, 166
AluBI	AGCT	3 cut(s)	16, 106, 160
AluI	AGCT	3 cut(s)	16, 106, 160
AlwI	GGATC	3 cut(s)	162, 166, 308
AoxI	GGCC	2 cut(s)	6, 121
ApoI	RAATTY	2 cut(s)	208, 230
AspA2I	CCTAGG	1 cut(s)	181
AspS9I	GGNCC	1 cut(s)	122
AsuC2I	CCSGG	1 cut(s)	80
AvrII	CCTAGG	1 cut(s)	181
BbsI	GAAGAC	2 cut(s)	96, 192
BcnI	CCSGG	1 cut(s)	80
BfaI	CTAG	2 cut(s)	182, 213
BisI	GCNGC	1 cut(s)	6
BlnI	CCTAGG	1 cut(s)	181
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	1 cut(s)	80
BmgT120I	GGNCC	1 cut(s)	122
BmrFI	CCNGG	1 cut(s)	80
BpiI	GAAGAC	2 cut(s)	96, 192
Bpu10I	CCTNAGC	1 cut(s)	161
BpuMI	CCSGG	1 cut(s)	80
BsaJI	CCNNGG	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	4 cut(s)	60, 61, 85, 115
Bse1I	ACTGG	1 cut(s)	98
BseDI	CCNNGG	1 cut(s)	181
BseLI	CCNNNNNNNGG	4 cut(s)	60, 61, 85, 115
BseMII	CTCAG	2 cut(s)	42, 175
BseNI	ACTGG	1 cut(s)	98
Bsh1285I	CGRYCG	2 cut(s)	116, 120
BshFI	GGCC	2 cut(s)	8, 123
BsiEI	CGRYCG	2 cut(s)	116, 120
BsiSI	CCGG	1 cut(s)	80
BslFI	GGGAC	1 cut(s)	62
BslI	CCNNNNNNNGG	4 cut(s)	60, 61, 85, 115
BsmFI	GGGAC	1 cut(s)	62
BsnI	GGCC	2 cut(s)	8, 123
Bsp143I	GATC	5 cut(s)	113, 144, 154, 171, 313
BspACI	CCGC	3 cut(s)	5, 83, 135
BspANI	GGCC	2 cut(s)	8, 123
BspCNI	CTCAG	2 cut(s)	41, 174
BspPI	GGATC	3 cut(s)	162, 166, 308
BsrBI	CCGCTC	1 cut(s)	137
BsrI	ACTGG	1 cut(s)	98
BssECI	CCNNGG	1 cut(s)	181
BssMI	GATC	5 cut(s)	113, 144, 154, 171, 313
BssT1I	CCWWGG	1 cut(s)	181
BstC8I	GCNNGC	1 cut(s)	18
BstDEI	CTNAG	3 cut(s)	28, 161, 168
BstKTI	GATC	5 cut(s)	116, 147, 157, 174, 316
BstMBI	GATC	5 cut(s)	113, 144, 154, 171, 313
BstMCI	CGRYCG	2 cut(s)	116, 120
BstMWI	GCNNNNNNNGC	1 cut(s)	103
BstSCI	CCNGG	1 cut(s)	78
BstV2I	GAAGAC	2 cut(s)	96, 192
BstX2I	RGATCY	2 cut(s)	171, 313
BstYI	RGATCY	2 cut(s)	171, 313
BsuRI	GGCC	2 cut(s)	8, 123
BtsIMutI	CAGTG	1 cut(s)	105
Cac8I	GCNNGC	1 cut(s)	18
Cfr13I	GGNCC	1 cut(s)	122
CseI	GACGC	1 cut(s)	77
CviJI	RGCY	8 cut(s)	8, 16, 65, 97, 106, 123, 160, 167
CviKI_1	RGCY	8 cut(s)	8, 16, 65, 97, 106, 123, 160, 167
DdeI	CTNAG	3 cut(s)	28, 161, 168
DpnI	GATC	5 cut(s)	115, 146, 156, 173, 315
DpnII	GATC	5 cut(s)	113, 144, 154, 171, 313
DrdI	GACNNNNNNGTC	1 cut(s)	74
DseDI	GACNNNNNNGTC	1 cut(s)	74
EciI	GGCGGA	1 cut(s)	98
Eco130I	CCWWGG	1 cut(s)	181
Eco57I	CTGAAG	2 cut(s)	57, 161
EcoRI	GAATTC	1 cut(s)	208
EcoT14I	CCWWGG	1 cut(s)	181
ErhI	CCWWGG	1 cut(s)	181
FaiI	YATR	2 cut(s)	287, 361
FaqI	GGGAC	1 cut(s)	62
Fnu4HI	GCNGC	1 cut(s)	6
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	2 cut(s)	182, 213
GluI	GCNGC	1 cut(s)	6
HaeIII	GGCC	2 cut(s)	8, 123
HapII	CCGG	1 cut(s)	80
HgaI	GACGC	1 cut(s)	77
HindIII	AAGCTT	1 cut(s)	14
HinfI	GANTC	4 cut(s)	22, 58, 128, 257
HpaII	CCGG	1 cut(s)	80
Hpy188I	TCNGA	1 cut(s)	141
HpyF10VI	GCNNNNNNNGC	1 cut(s)	103
HpyF3I	CTNAG	3 cut(s)	28, 161, 168
Kzo9I	GATC	5 cut(s)	113, 144, 154, 171, 313
LmnI	GCTCC	1 cut(s)	111
LpnPI	CCDG	5 cut(s)	68, 93, 111, 138, 148
MaeI	CTAG	2 cut(s)	182, 213
MalI	GATC	5 cut(s)	115, 146, 156, 173, 315
MbiI	CCGCTC	1 cut(s)	137
MboI	GATC	5 cut(s)	113, 144, 154, 171, 313
MboII	GAAGA	3 cut(s)	101, 154, 192
MfeI	CAATTG	1 cut(s)	329
MflI	RGATCY	2 cut(s)	171, 313
MluCI	AATT	5 cut(s)	45, 208, 230, 329, 345
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	3 cut(s)	19, 79, 120
MseI	TTAA	1 cut(s)	344
MspI	CCGG	1 cut(s)	80
MspR9I	CCNGG	1 cut(s)	80
MunI	CAATTG	1 cut(s)	329
MwoI	GCNNNNNNNGC	1 cut(s)	103
NciI	CCSGG	1 cut(s)	80
NdeII	GATC	5 cut(s)	113, 144, 154, 171, 313
PcsI	WCGNNNNNNNCGW	2 cut(s)	194, 203
PfeI	GAWTC	4 cut(s)	22, 58, 128, 257
PkrI	GCNGC	1 cut(s)	7
Ple19I	CGATCG	1 cut(s)	116
PsiI	TTATAA	1 cut(s)	361
PspPI	GGNCC	1 cut(s)	122
PsuI	RGATCY	2 cut(s)	171, 313
PvuI	CGATCG	1 cut(s)	116
SaqAI	TTAA	1 cut(s)	344
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	5 cut(s)	113, 144, 154, 171, 313
Sau96I	GGNCC	1 cut(s)	122
ScrFI	CCNGG	1 cut(s)	80
SetI	ASST	4 cut(s)	18, 108, 162, 187
Sse9I	AATT	5 cut(s)	45, 208, 230, 329, 345
SsiI	CCGC	3 cut(s)	5, 83, 135
SspMI	CTAG	2 cut(s)	182, 213
StyD4I	CCNGG	1 cut(s)	78
StyI	CCWWGG	1 cut(s)	181
TaqI	TCGA	3 cut(s)	112, 147, 260
TaqII	GACCGA	1 cut(s)	106
TasI	AATT	5 cut(s)	45, 208, 230, 329, 345
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	4 cut(s)	22, 58, 128, 257
Tru1I	TTAA	1 cut(s)	344
Tru9I	TTAA	1 cut(s)	344
TscAI	CASTG	1 cut(s)	105
TspRI	CASTG	1 cut(s)	105
XapI	RAATTY	2 cut(s)	208, 230
XmaJI	CCTAGG	1 cut(s)	181
XspI	CTAG	2 cut(s)	182, 213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.