Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001792

Physical Location & Seq

Genomic Coordinates Forward (+)

10952547 .. 10955411

Gene Structure 2865 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G25710.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGAAGCAGTTCGTTCAACAACAACCTTATCTAATTTTCATCTACTGAATATTTTAGTCCTGCGTTCTCTCAAGCCTCTGCATCGTCTATCTTTCTCTTTCTCTGCCTCAGCAATGGAGAGTGATGCATCTTGTAGCTTAGTTTTGTGTGGGAAATCCTCTGTGGAAACTGAGGTAGCAAAGGGTTTGAAGAACAAGAACTCTCTTAAACTCCCAGATAATACCAAAGTTTCACTCATTTTAGAATCTGAGGCTAAGAATTTGGTTAAAGATGATGATAATTCCTTCAATCTTTCACTCTTTATGAACTCGATTATAACTCATCGGTTTGGACGGTTTCTCATTTGGTCTCCGCGTTTGTCTTCCACTCACGATGTTGTTTCTCATAACTTCTCTGAGCTTCCAGTTGGTTCAGTTTGTGTCACTGATATCCAGTTTAAGGGTCGAGGCAGAACAAAGAATGTATGGGAATCTCCAAAGGGTTGTCTTATGTATTCTTTTACTCTAGAAATGGAAGATGGTCGAGTCGTGCCTTTGATACAGTATGTGGTATCTCTTGCTGTAACTGAGGCAGTGAAAGATGTTTGTGACAAGAAGGGTTTGCCGTACATTGATGTTAAAATAAAGTGGCCAAATGATCTGTACGTGAATGGTCTTAAGGTTGGAGGCATTTTGTGTACCTCTACGTATAGATCAAAGAAGTTCAATGTCAGTGTTGGTGTGGGGTTGAATGTGGACAACGGGCAACCGACCACGTGCTTAAATGCAGTACTAAAAGGCATGGCTCCTGAATCAAACCTACTTAAAAGAGAGGAAATCCTTGGTGCCTTCTTTCATAAATTTGAAAAATTCTTCGATCTATTCATGGACCAAGGTTTTAAATCTCTCGAAGAGCTTTACTACAGGACATGGCTACACAGCGAGCAAAGAGTGATTGTTGAAGACAAAGTAGAGGACCAAGTTGTTCAAAATGTTGTGACTATCCAGGGTTTGACTTCTTCTGGATATTTGCTGGCTGTTGGAGATGACAATCAAATGTATGAGCTTCACCCTGATGGCAATAGTTTTGACTTTTTCAAAGGTCTGGTTCGAAGAAAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0001101 GO:0003674 GO:0003824 GO:0004077 GO:0004078 GO:0004080 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005652 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006807 GO:0006996 GO:0007584 GO:0008144 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009305 GO:0009374 GO:0009507 GO:0009536 GO:0009605 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0014070 GO:0016043 GO:0016363 GO:0016569 GO:0016570 GO:0016874 GO:0016879 GO:0018271 GO:0019538 GO:0019842 GO:0019899 GO:0031406 GO:0031667 GO:0031974 GO:0031981 GO:0033218 GO:0033273 GO:0033293 GO:0034399 GO:0036094 GO:0036211 GO:0042221 GO:0042493 GO:0042802 GO:0042803 GO:0042966 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0048037 GO:0050662 GO:0050896 GO:0051276 GO:0070013 GO:0070781 GO:0071110 GO:0071704 GO:0071840 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1901681 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00780 ko01100 map00780 map01100

Pfam Domains

Protein Families

BPL_C BPL_LplA_LipB

Protein Analysis

367

Amino Acids

41.22

Weight (kDa)

7.6

Isoelectric Point (pI)

29.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BPL_LplA_LipB	PF03099	117 - 244	3e-39	Biotin/lipoate A/B protein ligase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G37150 AT1G37150 AT1G37150 AT1G37150 AT1G37150 AT1G37150 AT1G37150 AT1G37150 AT1G37150 AT2G25710 AT2G25710 AT2G25710 AT2G25710 AT2G25710 AT2G25710 AT2G25710 AT2G25710
fragaria_vesca	FvH4_2g26260 FvH4_2g26260 FvH4_2g26260 FvH4_2g26260 FvH4_2g26260 FvH4_2g26260 FvH4_2g26260 FvH4_2g26260 FvH4_5g31361
malus_domestica	MD08G1169900.v1.1 MD15G1356700.v1.1
prunus_persica	Prupe.1G503900_v2.0.a1 Prupe.1G503900_v2.0.a1 Prupe.1G503900_v2.0.a1
pyrus_communis	pycom08g14530 pycom15g31890
rosa_chinensis	RchiOBHm_Chr6g0294871
rosa_laevigata	RLG00000011835
rosa_multiflora	Rmu_co8434131.1_g000001 Rmu_sc0008966.1_g000013 Rmu_sc0021726.1_g000002
rosa_roxburghii	Rroxscaffold_7G00172940
rosa_rugosa	Rorug06G0247400 Rorug06G0247500 Rorug06G0247600
rosa_samantha	Rh6AG361000 Rh6BG367600 Rh6CG374800 Rh6DG361500
rosa_wichuraiana	Rw6G031490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	317
AccB1I	GGYRCC	1 cut(s)	824
AccII	CGCG	1 cut(s)	355
AciI	CCGC	1 cut(s)	353
AcoI	YGGCCR	1 cut(s)	629
AcsI	RAATTY	3 cut(s)	259, 839, 848
AcvI	CACGTG	1 cut(s)	756
AfaI	GTAC	4 cut(s)	608, 644, 679, 771
AfiI	CCNNNNNNNGG	1 cut(s)	439
AflII	CTTAAG	1 cut(s)	656
AgsI	TTSAA	9 cut(s)	18, 190, 289, 706, 730, 845, 941, 968, 1078
AjnI	CCWGG	1 cut(s)	984
AluBI	AGCT	4 cut(s)	138, 400, 895, 1045
AluI	AGCT	4 cut(s)	138, 400, 895, 1045
Alw26I	GTCTC	1 cut(s)	354
AoxI	GGCC	1 cut(s)	629
ApoI	RAATTY	3 cut(s)	259, 839, 848
Asp700I	GAANNNNTTC	1 cut(s)	9
AspS9I	GGNCC	2 cut(s)	868, 955
AsuHPI	GGTGA	1 cut(s)	1040
AsuII	TTCGAA	1 cut(s)	1090
AvaII	GGWCC	2 cut(s)	868, 955
BalI	TGGCCA	1 cut(s)	631
BanI	GGYRCC	1 cut(s)	824
BbrPI	CACGTG	1 cut(s)	756
BbsI	GAAGAC	2 cut(s)	354, 948
BbvCI	CCTCAGC	1 cut(s)	109
BccI	CCATC	2 cut(s)	512, 1049
BceAI	ACGGC	1 cut(s)	589
BciT130I	CCWGG	1 cut(s)	986
BcoDI	GTCTC	1 cut(s)	354
BfaI	CTAG	1 cut(s)	506
BfmI	CTRYAG	1 cut(s)	901
BfrI	CTTAAG	1 cut(s)	656
BmcAI	AGTACT	1 cut(s)	771
Bme1390I	CCNGG	1 cut(s)	986
Bme18I	GGWCC	2 cut(s)	868, 955
BmgT120I	GGNCC	2 cut(s)	868, 955
BmiI	GGNNCC	2 cut(s)	786, 826
BmrFI	CCNGG	1 cut(s)	986
BmsI	GCATC	3 cut(s)	91, 115, 137
BpiI	GAAGAC	2 cut(s)	354, 948
Bpu10I	CCTNAGC	1 cut(s)	109
Bpu14I	TTCGAA	1 cut(s)	1090
BpuEI	CTTGAG	1 cut(s)	56
BsaAI	YACGTR	3 cut(s)	646, 687, 756
BsaBI	GATNNNNATC	1 cut(s)	1029
BsaI	GGTCTC	1 cut(s)	354
BsaJI	CCNNGG	3 cut(s)	820, 871, 985
Bsc4I	CCNNNNNNNGG	1 cut(s)	439
Bse1I	ACTGG	2 cut(s)	404, 433
Bse3DI	GCAATG	1 cut(s)	120
Bse8I	GATNNNNATC	1 cut(s)	1029
BseBI	CCWGG	1 cut(s)	986
BseDI	CCNNGG	3 cut(s)	820, 871, 985
BseJI	GATNNNNATC	1 cut(s)	1029
BseLI	CCNNNNNNNGG	1 cut(s)	439
BseMI	GCAATG	1 cut(s)	120
BseMII	CTCAG	5 cut(s)	123, 162, 240, 387, 558
BseNI	ACTGG	2 cut(s)	404, 433
Bsh1236I	CGCG	1 cut(s)	355
BshFI	GGCC	1 cut(s)	631
BshNI	GGYRCC	1 cut(s)	824
BslI	CCNNNNNNNGG	1 cut(s)	439
BsmAI	GTCTC	1 cut(s)	354
BsnI	GGCC	1 cut(s)	631
Bso31I	GGTCTC	1 cut(s)	354
Bsp119I	TTCGAA	1 cut(s)	1090
Bsp143I	GATC	3 cut(s)	637, 692, 856
BspACI	CCGC	1 cut(s)	353
BspANI	GGCC	1 cut(s)	631
BspCNI	CTCAG	5 cut(s)	122, 163, 241, 388, 559
BspFNI	CGCG	1 cut(s)	355
BspLI	GGNNCC	2 cut(s)	786, 826
BspQI	GCTCTTC	1 cut(s)	885
BspT104I	TTCGAA	1 cut(s)	1090
BspT107I	GGYRCC	1 cut(s)	824
BspTI	CTTAAG	1 cut(s)	656
BspTNI	GGTCTC	1 cut(s)	354
BsrDI	GCAATG	1 cut(s)	120
BsrI	ACTGG	2 cut(s)	404, 433
BssECI	CCNNGG	3 cut(s)	820, 871, 985
BssMI	GATC	3 cut(s)	637, 692, 856
BssT1I	CCWWGG	2 cut(s)	820, 871
Bst2UI	CCWGG	1 cut(s)	986
Bst4CI	ACNGT	2 cut(s)	336, 543
Bst6I	CTCTTC	1 cut(s)	885
BstAFI	CTTAAG	1 cut(s)	656
BstBAI	YACGTR	3 cut(s)	646, 687, 756
BstBI	TTCGAA	1 cut(s)	1090
BstC8I	GCNNGC	2 cut(s)	923, 1014
BstDEI	CTNAG	7 cut(s)	109, 139, 171, 249, 255, 396, 567
BstFNI	CGCG	1 cut(s)	355
BstKTI	GATC	3 cut(s)	640, 695, 859
BstMAI	GTCTC	1 cut(s)	354
BstMBI	GATC	3 cut(s)	637, 692, 856
BstNI	CCWGG	1 cut(s)	986
BstSCI	CCNGG	1 cut(s)	984
BstSFI	CTRYAG	1 cut(s)	901
BstSNI	TACGTA	1 cut(s)	687
BstUI	CGCG	1 cut(s)	355
BstV2I	GAAGAC	2 cut(s)	354, 948
BsuRI	GGCC	1 cut(s)	631
BtsI	GCAGTG	1 cut(s)	579
BtsIMutI	CAGTG	3 cut(s)	423, 579, 718
Cac8I	GCNNGC	2 cut(s)	923, 1014
Cfr13I	GGNCC	2 cut(s)	868, 955
Csp6I	GTAC	4 cut(s)	607, 643, 678, 770
CviAII	CATG	3 cut(s)	781, 865, 909
CviQI	GTAC	4 cut(s)	607, 643, 678, 770
DdeI	CTNAG	7 cut(s)	109, 139, 171, 249, 255, 396, 567
DpnI	GATC	3 cut(s)	639, 694, 858
DpnII	GATC	3 cut(s)	637, 692, 856
DraI	TTTAAA	1 cut(s)	880
EaeI	YGGCCR	1 cut(s)	629
Eam1104I	CTCTTC	1 cut(s)	885
EarI	CTCTTC	1 cut(s)	885
Eco105I	TACGTA	1 cut(s)	687
Eco130I	CCWWGG	2 cut(s)	820, 871
Eco31I	GGTCTC	1 cut(s)	354
Eco32I	GATATC	1 cut(s)	430
Eco47I	GGWCC	2 cut(s)	868, 955
Eco72I	CACGTG	1 cut(s)	756
EcoRII	CCWGG	1 cut(s)	984
EcoRV	GATATC	1 cut(s)	430
EcoT14I	CCWWGG	2 cut(s)	820, 871
EcoT22I	ATGCAT	1 cut(s)	130
ErhI	CCWWGG	2 cut(s)	820, 871
FaeI	CATG	3 cut(s)	784, 868, 912
FatI	CATG	3 cut(s)	780, 864, 908
FspBI	CTAG	1 cut(s)	506
HaeIII	GGCC	1 cut(s)	631
Hin1II	CATG	3 cut(s)	784, 868, 912
HinfI	GANTC	4 cut(s)	245, 470, 525, 791
HphI	GGTGA	1 cut(s)	1040
Hpy166II	GTNNAC	2 cut(s)	678, 736
Hpy188I	TCNGA	2 cut(s)	250, 397
Hpy188III	TCNNGA	5 cut(s)	371, 506, 788, 887, 1002
Hpy8I	GTNNAC	2 cut(s)	678, 736
HpyAV	CCTTC	3 cut(s)	295, 589, 838
HpyCH4III	ACNGT	2 cut(s)	336, 543
HpyCH4IV	ACGT	3 cut(s)	645, 686, 755
HpyCH4V	TGCA	3 cut(s)	82, 128, 767
HpyF3I	CTNAG	7 cut(s)	109, 139, 171, 249, 255, 396, 567
HpySE526I	ACGT	3 cut(s)	645, 686, 755
Hsp92II	CATG	3 cut(s)	784, 868, 912
Kzo9I	GATC	3 cut(s)	637, 692, 856
LguI	GCTCTTC	1 cut(s)	885
LmnI	GCTCC	1 cut(s)	790
LweI	GCATC	3 cut(s)	91, 115, 137
MaeI	CTAG	1 cut(s)	506
MaeII	ACGT	3 cut(s)	645, 686, 755
MaeIII	GTNAC	4 cut(s)	421, 562, 587, 976
MalI	GATC	3 cut(s)	639, 694, 858
MboI	GATC	3 cut(s)	637, 692, 856
MboII	GAAGA	8 cut(s)	202, 354, 527, 844, 902, 953, 990, 1104
MlsI	TGGCCA	1 cut(s)	631
MluCI	AATT	5 cut(s)	34, 259, 280, 839, 848
MluNI	TGGCCA	1 cut(s)	631
MlyI	GAGTC	1 cut(s)	534
MmeI	TCCRAC	2 cut(s)	643, 1000
Mox20I	TGGCCA	1 cut(s)	631
Mph1103I	ATGCAT	1 cut(s)	130
MroXI	GAANNNNTTC	1 cut(s)	9
MscI	TGGCCA	1 cut(s)	631
MseI	TTAA	8 cut(s)	207, 267, 438, 618, 657, 761, 804, 879
MslI	CAYNNNNRTG	1 cut(s)	1053
Msp20I	TGGCCA	1 cut(s)	631
MspCI	CTTAAG	1 cut(s)	656
MspR9I	CCNGG	1 cut(s)	986
MvaI	CCWGG	1 cut(s)	986
MvnI	CGCG	1 cut(s)	355
NdeII	GATC	3 cut(s)	637, 692, 856
NlaIII	CATG	3 cut(s)	784, 868, 912
NlaIV	GGNNCC	2 cut(s)	786, 826
NmuCI	GTSAC	3 cut(s)	421, 587, 976
NsiI	ATGCAT	1 cut(s)	130
NspV	TTCGAA	1 cut(s)	1090
PciSI	GCTCTTC	1 cut(s)	885
PdmI	GAANNNNTTC	1 cut(s)	9
PfeI	GAWTC	3 cut(s)	245, 470, 791
PleI	GAGTC	1 cut(s)	533
PmaCI	CACGTG	1 cut(s)	756
PmlI	CACGTG	1 cut(s)	756
PpsI	GAGTC	1 cut(s)	533
Ppu21I	YACGTR	3 cut(s)	646, 687, 756
PsiI	TTATAA	1 cut(s)	317
Psp6I	CCWGG	1 cut(s)	984
PspCI	CACGTG	1 cut(s)	756
PspGI	CCWGG	1 cut(s)	984
PspN4I	GGNNCC	2 cut(s)	786, 826
PspPI	GGNCC	2 cut(s)	868, 955
RsaI	GTAC	4 cut(s)	608, 644, 679, 771
RsaNI	GTAC	4 cut(s)	607, 643, 678, 770
RseI	CAYNNNNRTG	1 cut(s)	1053
SapI	GCTCTTC	1 cut(s)	885
SaqAI	TTAA	8 cut(s)	207, 267, 438, 618, 657, 761, 804, 879
Sau3AI	GATC	3 cut(s)	637, 692, 856
Sau96I	GGNCC	2 cut(s)	868, 955
ScaI	AGTACT	1 cut(s)	771
SchI	GAGTC	1 cut(s)	534
ScrFI	CCNGG	1 cut(s)	986
SfaNI	GCATC	3 cut(s)	91, 115, 137
SfcI	CTRYAG	1 cut(s)	901
SfuI	TTCGAA	1 cut(s)	1090
SinI	GGWCC	2 cut(s)	868, 955
SmiMI	CAYNNNNRTG	1 cut(s)	1053
SmlI	CTYRAG	2 cut(s)	71, 656
SmoI	CTYRAG	2 cut(s)	71, 656
SnaBI	TACGTA	1 cut(s)	687
Sse9I	AATT	5 cut(s)	34, 259, 280, 839, 848
SsiI	CCGC	1 cut(s)	353
SspI	AATATT	1 cut(s)	52
SspMI	CTAG	1 cut(s)	506
StyD4I	CCNGG	1 cut(s)	984
StyI	CCWWGG	2 cut(s)	820, 871
TaaI	ACNGT	2 cut(s)	336, 543
TaiI	ACGT	3 cut(s)	648, 689, 758
TaqI	TCGA	6 cut(s)	311, 445, 523, 855, 888, 1090
TasI	AATT	5 cut(s)	34, 259, 280, 839, 848
TatI	WGTACW	1 cut(s)	769
TfiI	GAWTC	3 cut(s)	245, 470, 791
Tru1I	TTAA	8 cut(s)	207, 267, 438, 618, 657, 761, 804, 879
Tru9I	TTAA	8 cut(s)	207, 267, 438, 618, 657, 761, 804, 879
TscAI	CASTG	3 cut(s)	430, 579, 718
TseFI	GTSAC	3 cut(s)	421, 587, 976
Tsp45I	GTSAC	3 cut(s)	421, 587, 976
TspDTI	ATGAA	4 cut(s)	29, 320, 824, 853
TspRI	CASTG	3 cut(s)	430, 579, 718
Vha464I	CTTAAG	1 cut(s)	656
VpaK11BI	GGWCC	2 cut(s)	868, 955
XapI	RAATTY	3 cut(s)	259, 839, 848
XbaI	TCTAGA	1 cut(s)	505
XmnI	GAANNNNTTC	1 cut(s)	9
XspI	CTAG	1 cut(s)	506
ZrmI	AGTACT	1 cut(s)	771
Zsp2I	ATGCAT	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.