Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8434131.1

Orthogroup ID

OG0001792

Physical Location & Seq

Genomic Coordinates Forward (+)

16 .. 1316

Gene Structure 1301 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8434131.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

atggtctcctcctcctcctccaccttcttcttcttcactagcgcgctggggtttctatctgtacggaactcactgaagaaagctattttctcacgcagaacgagctcggctatttcagctgcctcaggcatggattgcaattcaagctgtacgttggtgctgcgcggcaaatcgcaggcggaaagtaacattgctgaggggctgaagaacagtaacgctctgaagctcagtgacaacggtgagctttcaattctgttagactcggaattgaagaaaccgttcaaggaagacgacgcttttggaatcgactcgttcatgaactctctctccaccgatcggttcggtaggttgctgctttggtcgccgcgcttgccgtcgacgcaggacgtcgtttctcagaatttctgtgagcttccaaacggtgcggtttgtgttgctgatgttcagtacaaagggcgaggcaggtcgaagaatgtgtgggagtctcccaaaggttgcctgctgttttcctttactctgcagatggaggatgggcggatcgtgccactgatacaatatgtggtgtctctagccatcactgaggccataaaggatgtttgtgataggaatggcttgccatatattgatgttagaataaaatggccaaatgatttatatttgaatggcctcaaagttggaggcattttatgcacgtcaacatataagtcgacgaagttcaatgtgtctgctggtaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0001101 GO:0003674 GO:0003824 GO:0004077 GO:0004078 GO:0004080 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005652 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006807 GO:0006996 GO:0007584 GO:0008144 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009305 GO:0009374 GO:0009507 GO:0009536 GO:0009605 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0014070 GO:0016043 GO:0016363 GO:0016569 GO:0016570 GO:0016874 GO:0016879 GO:0018271 GO:0019538 GO:0019842 GO:0019899 GO:0031406 GO:0031667 GO:0031974 GO:0031981 GO:0033218 GO:0033273 GO:0033293 GO:0034399 GO:0036094 GO:0036211 GO:0042221 GO:0042493 GO:0042802 GO:0042803 GO:0042966 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0048037 GO:0050662 GO:0050896 GO:0051276 GO:0070013 GO:0070781 GO:0071110 GO:0071704 GO:0071840 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1901681 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00780 ko01100 map00780 map01100

Pfam Domains

Protein Families

BPL_C BPL_LplA_LipB

Protein Analysis

245

Amino Acids

26.81

Weight (kDa)

8.81

Isoelectric Point (pI)

36.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G37150 AT1G37150 AT1G37150 AT1G37150 AT1G37150 AT1G37150 AT1G37150 AT1G37150 AT1G37150 AT2G25710 AT2G25710 AT2G25710 AT2G25710 AT2G25710 AT2G25710 AT2G25710 AT2G25710
fragaria_vesca	FvH4_2g26260 FvH4_2g26260 FvH4_2g26260 FvH4_2g26260 FvH4_2g26260 FvH4_2g26260 FvH4_2g26260 FvH4_2g26260 FvH4_5g31361
malus_domestica	MD08G1169900.v1.1 MD15G1356700.v1.1
prunus_persica	Prupe.1G503900_v2.0.a1 Prupe.1G503900_v2.0.a1 Prupe.1G503900_v2.0.a1
pyrus_communis	pycom08g14530 pycom15g31890
rosa_chinensis	RchiOBHm_Chr6g0294871
rosa_laevigata	RLG00000011835
rosa_multiflora	Rmu_co8434131.1_g000001 Rmu_sc0008966.1_g000013 Rmu_sc0021726.1_g000002
rosa_roxburghii	Rroxscaffold_7G00172940
rosa_rugosa	Rorug06G0247400 Rorug06G0247500 Rorug06G0247600
rosa_samantha	Rh6AG361000 Rh6BG367600 Rh6CG374800 Rh6DG361500
rosa_wichuraiana	Rw6G031490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	390
Acc36I	ACCTGC	1 cut(s)	453
AccI	GTMKAC	2 cut(s)	377, 707
AccII	CGCG	3 cut(s)	44, 165, 367
AciI	CCGC	5 cut(s)	165, 179, 365, 425, 535
AclWI	GGATC	1 cut(s)	545
AcoI	YGGCCR	1 cut(s)	641
AcsI	RAATTY	1 cut(s)	400
AcuI	CTGAAG	3 cut(s)	95, 224, 242
AcyI	GRCGYC	1 cut(s)	387
AfaI	GTAC	3 cut(s)	63, 151, 449
AfiI	CCNNNNNNNGG	1 cut(s)	336
AgsI	TTSAA	6 cut(s)	144, 249, 271, 283, 661, 718
AjiI	CACGTC	1 cut(s)	693
AloI	GAACNNNNNNTCC	2 cut(s)	311, 343
AluBI	AGCT	7 cut(s)	83, 105, 119, 147, 226, 244, 412
AluI	AGCT	7 cut(s)	83, 105, 119, 147, 226, 244, 412
Alw21I	GWGCWC	1 cut(s)	107
Alw26I	GTCTC	3 cut(s)	10, 489, 570
AlwI	GGATC	1 cut(s)	545
AoxI	GGCC	3 cut(s)	582, 641, 664
ApeKI	GCWGC	3 cut(s)	119, 160, 352
ApoI	RAATTY	1 cut(s)	400
ArsI	GACNNNNNNTTYG	2 cut(s)	281, 313
Asp700I	GAANNNNTTC	1 cut(s)	278
AspLEI	GCGC	4 cut(s)	44, 46, 165, 369
AsuHPI	GGTGA	1 cut(s)	251
AxyI	CCTNAGG	1 cut(s)	124
BalI	TGGCCA	1 cut(s)	643
BanII	GRGCYC	1 cut(s)	107
BbsI	GAAGAC	1 cut(s)	294
Bbv12I	GWGCWC	1 cut(s)	107
BbvCI	CCTCAGC	1 cut(s)	195
BbvI	GCAGC	3 cut(s)	106, 147, 339
BccI	CCATC	3 cut(s)	517, 524, 581
BceAI	ACGGC	1 cut(s)	358
BcoDI	GTCTC	3 cut(s)	10, 489, 570
BfaI	CTAG	2 cut(s)	39, 569
BfmI	CTRYAG	1 cut(s)	518
BfuAI	ACCTGC	1 cut(s)	453
BisI	GCNGC	5 cut(s)	120, 161, 166, 353, 365
BlsI	GCNGC	5 cut(s)	121, 162, 167, 354, 366
BmgBI	CACGTC	1 cut(s)	693
BpiI	GAAGAC	1 cut(s)	294
Bpu10I	CCTNAGC	1 cut(s)	195
BsaHI	GRCGYC	1 cut(s)	387
BsaI	GGTCTC	1 cut(s)	10
BsaXI	ACNNNNNCTCC	2 cut(s)	311, 341
Bsc4I	CCNNNNNNNGG	1 cut(s)	336
Bse21I	CCTNAGG	1 cut(s)	124
Bse3DI	GCAATG	1 cut(s)	189
BseGI	GGATG	2 cut(s)	535, 598
BseLI	CCNNNNNNNGG	1 cut(s)	336
BseMI	GCAATG	1 cut(s)	189
BseMII	CTCAG	5 cut(s)	138, 186, 241, 410, 570
BsePI	GCGCGC	1 cut(s)	42
BseRI	GAGGAG	2 cut(s)	4, 7
BseXI	GCAGC	3 cut(s)	106, 147, 339
BseYI	CCCAGC	1 cut(s)	46
Bsh1236I	CGCG	3 cut(s)	44, 165, 367
Bsh1285I	CGRYCG	1 cut(s)	337
BshFI	GGCC	3 cut(s)	584, 643, 666
BsiEI	CGRYCG	1 cut(s)	337
BsiHKAI	GWGCWC	1 cut(s)	107
BslI	CCNNNNNNNGG	1 cut(s)	336
BsmAI	GTCTC	3 cut(s)	10, 489, 570
BsnI	GGCC	3 cut(s)	584, 643, 666
Bso31I	GGTCTC	1 cut(s)	10
Bsp1286I	GDGCHC	1 cut(s)	107
Bsp143I	GATC	2 cut(s)	334, 537
BspACI	CCGC	5 cut(s)	165, 179, 365, 425, 535
BspANI	GGCC	3 cut(s)	584, 643, 666
BspCNI	CTCAG	5 cut(s)	137, 187, 240, 409, 571
BspFNI	CGCG	3 cut(s)	44, 165, 367
BspHI	TCATGA	1 cut(s)	315
BspMAI	CTGCAG	1 cut(s)	522
BspMI	ACCTGC	1 cut(s)	453
BspPI	GGATC	1 cut(s)	545
BspTNI	GGTCTC	1 cut(s)	10
BsrDI	GCAATG	1 cut(s)	189
BssHII	GCGCGC	1 cut(s)	42
BssMI	GATC	2 cut(s)	334, 537
BssNI	GRCGYC	1 cut(s)	387
Bst4CI	ACNGT	4 cut(s)	212, 239, 279, 422
BstACI	GRCGYC	1 cut(s)	387
BstAPI	GCANNNNNTGC	2 cut(s)	135, 687
BstC8I	GCNNGC	5 cut(s)	44, 177, 371, 500, 614
BstDEI	CTNAG	5 cut(s)	124, 195, 227, 396, 579
BstF5I	GGATG	2 cut(s)	535, 598
BstFNI	CGCG	3 cut(s)	44, 165, 367
BstHHI	GCGC	4 cut(s)	44, 46, 165, 369
BstKTI	GATC	2 cut(s)	337, 540
BstMAI	GTCTC	3 cut(s)	10, 489, 570
BstMBI	GATC	2 cut(s)	334, 537
BstMCI	CGRYCG	1 cut(s)	337
BstMWI	GCNNNNNNNGC	9 cut(s)	102, 116, 135, 144, 361, 370, 379, 541, 687
BstSFI	CTRYAG	1 cut(s)	518
BstUI	CGCG	3 cut(s)	44, 165, 367
BstV1I	GCAGC	3 cut(s)	106, 147, 339
BstV2I	GAAGAC	1 cut(s)	294
Bsu36I	CCTNAGG	1 cut(s)	124
BsuRI	GGCC	3 cut(s)	584, 643, 666
BtrI	CACGTC	1 cut(s)	693
BtsCI	GGATG	2 cut(s)	535, 598
BtsIMutI	CAGTG	4 cut(s)	71, 235, 545, 576
BveI	ACCTGC	1 cut(s)	453
Cac8I	GCNNGC	5 cut(s)	44, 177, 371, 500, 614
CciI	TCATGA	1 cut(s)	315
CfoI	GCGC	4 cut(s)	44, 46, 165, 369
CseI	GACGC	2 cut(s)	302, 388
Csp6I	GTAC	3 cut(s)	62, 150, 448
CviAII	CATG	2 cut(s)	130, 316
CviQI	GTAC	3 cut(s)	62, 150, 448
DdeI	CTNAG	5 cut(s)	124, 195, 227, 396, 579
DpnI	GATC	2 cut(s)	336, 539
DpnII	GATC	2 cut(s)	334, 537
EaeI	YGGCCR	1 cut(s)	641
EciI	GGCGGA	2 cut(s)	194, 550
Ecl136II	GAGCTC	1 cut(s)	105
Eco24I	GRGCYC	1 cut(s)	107
Eco31I	GGTCTC	1 cut(s)	10
Eco53kI	GAGCTC	1 cut(s)	105
Eco57I	CTGAAG	3 cut(s)	95, 224, 242
Eco81I	CCTNAGG	1 cut(s)	124
EcoICRI	GAGCTC	1 cut(s)	105
EcoT38I	GRGCYC	1 cut(s)	107
FaeI	CATG	2 cut(s)	133, 319
FatI	CATG	2 cut(s)	129, 315
FblI	GTMKAC	2 cut(s)	377, 707
Fnu4HI	GCNGC	5 cut(s)	120, 161, 166, 353, 365
FokI	GGATG	2 cut(s)	542, 605
FriOI	GRGCYC	1 cut(s)	107
Fsp4HI	GCNGC	5 cut(s)	120, 161, 166, 353, 365
FspBI	CTAG	2 cut(s)	39, 569
GlaI	GCGC	4 cut(s)	43, 45, 164, 368
GluI	GCNGC	5 cut(s)	120, 161, 166, 353, 365
GsaI	CCCAGC	1 cut(s)	50
HaeIII	GGCC	3 cut(s)	584, 643, 666
HgaI	GACGC	2 cut(s)	302, 388
HhaI	GCGC	4 cut(s)	44, 46, 165, 369
Hin1I	GRCGYC	1 cut(s)	387
Hin1II	CATG	2 cut(s)	133, 319
Hin6I	GCGC	4 cut(s)	42, 44, 163, 367
HinP1I	GCGC	4 cut(s)	42, 44, 163, 367
HincII	GTYRAC	3 cut(s)	378, 696, 708
HindII	GTYRAC	3 cut(s)	378, 696, 708
HinfI	GANTC	4 cut(s)	260, 303, 308, 482
HphI	GGTGA	1 cut(s)	251
Hpy166II	GTNNAC	3 cut(s)	378, 696, 708
Hpy188I	TCNGA	3 cut(s)	222, 265, 399
Hpy188III	TCNNGA	1 cut(s)	316
Hpy8I	GTNNAC	3 cut(s)	378, 696, 708
Hpy99I	CGWCG	5 cut(s)	296, 379, 382, 392, 712
HpyAV	CCTTC	1 cut(s)	34
HpyCH4III	ACNGT	4 cut(s)	212, 239, 279, 422
HpyCH4IV	ACGT	3 cut(s)	152, 387, 692
HpyCH4V	TGCA	3 cut(s)	138, 520, 690
HpyF10VI	GCNNNNNNNGC	9 cut(s)	102, 116, 135, 144, 361, 370, 379, 541, 687
HpyF3I	CTNAG	5 cut(s)	124, 195, 227, 396, 579
HpySE526I	ACGT	3 cut(s)	152, 387, 692
Hsp92I	GRCGYC	1 cut(s)	387
Hsp92II	CATG	2 cut(s)	133, 319
HspAI	GCGC	4 cut(s)	42, 44, 163, 367
Kzo9I	GATC	2 cut(s)	334, 537
LpnPI	CCDG	7 cut(s)	32, 111, 161, 368, 448, 512, 714
Lsp1109I	GCAGC	3 cut(s)	106, 147, 339
MaeI	CTAG	2 cut(s)	39, 569
MaeII	ACGT	3 cut(s)	152, 387, 692
MaeIII	GTNAC	3 cut(s)	185, 212, 230
MalI	GATC	2 cut(s)	336, 539
MboI	GATC	2 cut(s)	334, 537
MboII	GAAGA	8 cut(s)	19, 22, 25, 88, 217, 283, 299, 481
MhlI	GDGCHC	1 cut(s)	107
MlsI	TGGCCA	1 cut(s)	643
MluCI	AATT	5 cut(s)	139, 249, 266, 400, 733
MluNI	TGGCCA	1 cut(s)	643
MlyI	GAGTC	3 cut(s)	254, 302, 491
MmeI	TCCRAC	1 cut(s)	655
Mox20I	TGGCCA	1 cut(s)	643
MroXI	GAANNNNTTC	1 cut(s)	278
MscI	TGGCCA	1 cut(s)	643
Msp20I	TGGCCA	1 cut(s)	643
MspA1I	CMGCKG	1 cut(s)	119
MvnI	CGCG	3 cut(s)	44, 165, 367
MwoI	GCNNNNNNNGC	9 cut(s)	102, 116, 135, 144, 361, 370, 379, 541, 687
NdeII	GATC	2 cut(s)	334, 537
NlaIII	CATG	2 cut(s)	133, 319
NmeAIII	GCCGAG	1 cut(s)	86
NmuCI	GTSAC	1 cut(s)	230
PagI	TCATGA	1 cut(s)	315
PauI	GCGCGC	1 cut(s)	42
PdmI	GAANNNNTTC	1 cut(s)	278
PfeI	GAWTC	1 cut(s)	303
PkrI	GCNGC	5 cut(s)	121, 162, 167, 354, 366
Ple19I	CGATCG	1 cut(s)	337
PleI	GAGTC	3 cut(s)	254, 302, 490
PpsI	GAGTC	3 cut(s)	254, 302, 490
Psp124BI	GAGCTC	1 cut(s)	107
PspFI	CCCAGC	1 cut(s)	46
PstI	CTGCAG	1 cut(s)	522
PteI	GCGCGC	1 cut(s)	42
PvuI	CGATCG	1 cut(s)	337
PvuII	CAGCTG	1 cut(s)	119
RsaI	GTAC	3 cut(s)	63, 151, 449
RsaNI	GTAC	3 cut(s)	62, 150, 448
SacI	GAGCTC	1 cut(s)	107
SalI	GTCGAC	2 cut(s)	376, 706
SatI	GCNGC	5 cut(s)	120, 161, 166, 353, 365
Sau3AI	GATC	2 cut(s)	334, 537
SchI	GAGTC	3 cut(s)	254, 302, 491
SduI	GDGCHC	1 cut(s)	107
SfcI	CTRYAG	1 cut(s)	518
SgrDI	CGTCGACG	1 cut(s)	376
Sse9I	AATT	5 cut(s)	139, 249, 266, 400, 733
SsiI	CCGC	5 cut(s)	165, 179, 365, 425, 535
SspMI	CTAG	2 cut(s)	39, 569
SstI	GAGCTC	1 cut(s)	107
TaaI	ACNGT	4 cut(s)	212, 239, 279, 422
TaiI	ACGT	3 cut(s)	155, 390, 695
TaqI	TCGA	4 cut(s)	306, 377, 467, 707
TasI	AATT	5 cut(s)	139, 249, 266, 400, 733
TatI	WGTACW	1 cut(s)	447
TauI	GCSGC	2 cut(s)	168, 367
TfiI	GAWTC	1 cut(s)	303
TscAI	CASTG	4 cut(s)	78, 235, 552, 583
TseFI	GTSAC	1 cut(s)	230
TseI	GCWGC	3 cut(s)	119, 160, 352
Tsp45I	GTSAC	1 cut(s)	230
TspDTI	ATGAA	2 cut(s)	304, 332
TspGWI	ACGGA	1 cut(s)	79
TspRI	CASTG	4 cut(s)	78, 235, 552, 583
XapI	RAATTY	1 cut(s)	400
XmiI	GTMKAC	2 cut(s)	377, 707
XmnI	GAANNNNTTC	1 cut(s)	278
XspI	CTAG	2 cut(s)	39, 569
ZraI	GACGTC	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.