FvH4_2g26260

Biotin--protein ligase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
21135857 .. 21140877
5021 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g26260.t8

Sequence Viewer

Length: 1074 bp
ATGACGTGTCGTCCATTTACGCCCTTGGTTGTAAATTCCGTCCTTAAAAAACCGAAACGTTTCAATTTTTTCTCAATGAAATTTCTGGTCTCCTCCTCTTCCTCCTTCACCAGCTCGCTGGGTTTTCTCTCTAACTCACTGAAGAGAGCCATTTTCTCACGAAGAACGAGCTCGACTGTTTCAGCCATGGATTGCAATTCAAGCTGCATGTTGGTACTACGCGGCAAATCGCCGGCGGAAAATAAGATTGCTGAGGCGCTGAAGAACACGAAGGCTCTGAAGCTCAGTGACGACACTGAGCTTTCGATTCTGTTGGACTCGGAATCGGAGAAGCCGTTCAAGGAAGGCGAAGCTTTTGGAGTCGATTCGTTCATGAAGTCTCTTTCTACCGATCGGTTCGGTAGGTTTTTGCTTTGGTCGCCGCGCTTGCCGTCGACGCAGGACGTCGTTTCTCAGAATTTCTGTGAGCTTCCGAACGGTGCGGTTTGTGTTGCTGATGTTCAGTTCAAAGGGAGAGGCCGGTCGAAGAATGTGTGGGAGTCTCCCAAAGGTTGCTTGCTGTTTTCCTTTACTCTGCAGATGGAGGATGGGCGAGTCGTGCCTCTGATACAATATGTGGTGTCTCTAGCCATCACGGAGGCCATAAAGGATGTTTGTGATAGAAACGGCTTGCCATATATTGATGTTAGAATAAAATGGCCAAATGATCTTTATTTAAATGGCCTCAAAGTTGGAGGCATTTTATGCACGTCAACATACAAGTCAAAGAAGTTCAATGTGTCTGCTGGTGTCGGCTTGAATATAAATAATGAGAAACCAACCACATGCTTGAATGCAGTACTTCGAGAATTGTCTGCTACAACATACCAGTTTAGAAGAGAAGAGATTCTTGCTGCCTTCTTTAACAAGTTTGAGAAGTTTTATGATCTTTTTATGCATCAAGGATTCCAATCTCTTGAGGAGCTATACTATAAGACATGGCTACACAGTTTATCCTTGCACACATTCACATCAATCCGAATAACTCCGCTGCTCGAGAACATAGGCCTGTTTTTGAAGTCAAGTTTCTTTTGA

Protein Analysis

358

Amino Acids

40.27

Weight (kDa)

9.25

Isoelectric Point (pI)

44.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPL_LplA_LipB PF03099 140 - 267 5.1e-35 Biotin/lipoate A/B protein ligase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 447
AccI GTMKAC 1 cut(s) 434
AccII CGCG 2 cut(s) 222, 424
AciI CCGC 5 cut(s) 222, 236, 422, 482, 1028
AclI AACGTT 1 cut(s) 58
AcoI YGGCCR 1 cut(s) 698
AcsI RAATTY 3 cut(s) 34, 80, 457
AcuI CTGAAG 3 cut(s) 161, 281, 299
AcyI GRCGYC 1 cut(s) 444
AfaI GTAC 2 cut(s) 216, 840
AflIII ACRYGT 1 cut(s) 5
AgsI TTSAA 8 cut(s) 64, 201, 340, 508, 775, 799, 832, 1057
AhdI GACNNNNNGTC 1 cut(s) 9
AjiI CACGTC 2 cut(s) 6, 750
AloI GAACNNNNNNTCC 2 cut(s) 320, 352
AluBI AGCT 8 cut(s) 114, 171, 204, 283, 301, 353, 469, 964
AluI AGCT 8 cut(s) 114, 171, 204, 283, 301, 353, 469, 964
Alw21I GWGCWC 1 cut(s) 173
Alw26I GTCTC 4 cut(s) 94, 384, 546, 627
Ama87I CYCGRG 1 cut(s) 1034
AoxI GGCC 5 cut(s) 517, 639, 698, 721, 1045
ApeKI GCWGC 3 cut(s) 204, 893, 1030
ApoI RAATTY 3 cut(s) 34, 80, 457
Asp700I GAANNNNTTC 3 cut(s) 59, 335, 885
AspLEI GCGC 2 cut(s) 259, 426
AsuHPI GGTGA 1 cut(s) 100
AvaI CYCGRG 1 cut(s) 1034
BalI TGGCCA 1 cut(s) 700
BanII GRGCYC 1 cut(s) 173
Bbv12I GWGCWC 1 cut(s) 173
BbvCI CCTCAGC 1 cut(s) 252
BbvI GCAGC 3 cut(s) 191, 880, 1017
BccI CCATC 3 cut(s) 574, 581, 638
BceAI ACGGC 3 cut(s) 319, 415, 682
BcoDI GTCTC 4 cut(s) 94, 384, 546, 627
BfaI CTAG 1 cut(s) 626
BfmI CTRYAG 1 cut(s) 575
BfoI RGCGCY 1 cut(s) 260
BisI GCNGC 5 cut(s) 205, 223, 422, 894, 1031
BlsI GCNGC 5 cut(s) 206, 224, 423, 895, 1032
BmcAI AGTACT 1 cut(s) 840
BmeRI GACNNNNNGTC 1 cut(s) 9
BmeT110I CYCGRG 1 cut(s) 1034
BmgBI CACGTC 2 cut(s) 6, 750
BmsI GCATC 1 cut(s) 946
Bpu10I CCTNAGC 1 cut(s) 252
BpuEI CTTGAG 1 cut(s) 977
BsaBI GATNNNNATC 1 cut(s) 949
BsaHI GRCGYC 1 cut(s) 444
BsaI GGTCTC 1 cut(s) 94
BsaJI CCNNGG 2 cut(s) 24, 186
BsaXI ACNNNNNCTCC 2 cut(s) 320, 350
Bse118I RCCGGY 2 cut(s) 232, 519
Bse1I ACTGG 1 cut(s) 868
Bse8I GATNNNNATC 1 cut(s) 949
BseDI CCNNGG 2 cut(s) 24, 186
BseGI GGATG 2 cut(s) 592, 655
BseJI GATNNNNATC 1 cut(s) 949
BseMII CTCAG 4 cut(s) 243, 288, 298, 467
BseNI ACTGG 1 cut(s) 868
BseRI GAGGAG 3 cut(s) 82, 85, 974
BseXI GCAGC 3 cut(s) 191, 880, 1017
BseYI CCCAGC 1 cut(s) 118
Bsh1236I CGCG 2 cut(s) 222, 424
Bsh1285I CGRYCG 2 cut(s) 394, 524
BshFI GGCC 5 cut(s) 519, 641, 700, 723, 1047
BsiEI CGRYCG 2 cut(s) 394, 524
BsiHKAI GWGCWC 1 cut(s) 173
BsiHKCI CYCGRG 1 cut(s) 1034
BsiSI CCGG 2 cut(s) 233, 520
BsmAI GTCTC 4 cut(s) 94, 384, 546, 627
BsmI GAATGC 1 cut(s) 838
BsnI GGCC 5 cut(s) 519, 641, 700, 723, 1047
Bso31I GGTCTC 1 cut(s) 94
BsoBI CYCGRG 1 cut(s) 1034
Bsp1286I GDGCHC 1 cut(s) 173
Bsp143I GATC 3 cut(s) 391, 706, 925
Bsp19I CCATGG 1 cut(s) 186
BspACI CCGC 5 cut(s) 222, 236, 422, 482, 1028
BspANI GGCC 5 cut(s) 519, 641, 700, 723, 1047
BspCNI CTCAG 4 cut(s) 244, 289, 297, 466
BspFNI CGCG 2 cut(s) 222, 424
BspHI TCATGA 1 cut(s) 372
BspMAI CTGCAG 1 cut(s) 579
BspTNI GGTCTC 1 cut(s) 94
BsrFI RCCGGY 2 cut(s) 232, 519
BsrI ACTGG 1 cut(s) 868
BssAI RCCGGY 2 cut(s) 232, 519
BssECI CCNNGG 2 cut(s) 24, 186
BssMI GATC 3 cut(s) 391, 706, 925
BssNI GRCGYC 1 cut(s) 444
BssT1I CCWWGG 2 cut(s) 24, 186
Bst4CI ACNGT 3 cut(s) 178, 479, 989
Bst6I CTCTTC 4 cut(s) 103, 137, 871, 876
BstACI GRCGYC 1 cut(s) 444
BstAPI GCANNNNNTGC 1 cut(s) 744
BstC8I GCNNGC 5 cut(s) 116, 234, 428, 557, 671
BstDEI CTNAG 4 cut(s) 252, 284, 297, 453
BstDSI CCRYGG 1 cut(s) 186
BstF5I GGATG 2 cut(s) 592, 655
BstFNI CGCG 2 cut(s) 222, 424
BstH2I RGCGCY 1 cut(s) 260
BstHHI GCGC 2 cut(s) 259, 426
BstKTI GATC 3 cut(s) 394, 709, 928
BstMAI GTCTC 4 cut(s) 94, 384, 546, 627
BstMBI GATC 3 cut(s) 391, 706, 925
BstMCI CGRYCG 2 cut(s) 394, 524
BstMWI GCNNNNNNNGC 6 cut(s) 201, 418, 427, 436, 598, 744
BstNSI RCATGY 2 cut(s) 211, 828
BstSFI CTRYAG 1 cut(s) 575
BstUI CGCG 2 cut(s) 222, 424
BstV1I GCAGC 3 cut(s) 191, 880, 1017
BstXI CCANNNNNNTGG 1 cut(s) 118
BsuRI GGCC 5 cut(s) 519, 641, 700, 723, 1047
BtgI CCRYGG 1 cut(s) 186
BtrI CACGTC 2 cut(s) 6, 750
BtsCI GGATG 2 cut(s) 592, 655
BtsIMutI CAGTG 3 cut(s) 137, 292, 294
Cac8I GCNNGC 5 cut(s) 116, 234, 428, 557, 671
CciI TCATGA 1 cut(s) 372
CfoI GCGC 2 cut(s) 259, 426
Cfr10I RCCGGY 2 cut(s) 232, 519
CseI GACGC 1 cut(s) 445
Csp6I GTAC 2 cut(s) 215, 839
CviAII CATG 5 cut(s) 187, 208, 373, 825, 978
CviQI GTAC 2 cut(s) 215, 839
DdeI CTNAG 4 cut(s) 252, 284, 297, 453
DpnI GATC 3 cut(s) 393, 708, 927
DpnII GATC 3 cut(s) 391, 706, 925
DraI TTTAAA 1 cut(s) 717
DriI GACNNNNNGTC 1 cut(s) 9
EaeI YGGCCR 1 cut(s) 698
Eam1104I CTCTTC 4 cut(s) 103, 137, 871, 876
Eam1105I GACNNNNNGTC 1 cut(s) 9
EarI CTCTTC 4 cut(s) 103, 137, 871, 876
EciI GGCGGA 1 cut(s) 251
Ecl136II GAGCTC 1 cut(s) 171
Eco130I CCWWGG 2 cut(s) 24, 186
Eco147I AGGCCT 1 cut(s) 1047
Eco24I GRGCYC 1 cut(s) 173
Eco31I GGTCTC 1 cut(s) 94
Eco53kI GAGCTC 1 cut(s) 171
Eco57I CTGAAG 3 cut(s) 161, 281, 299
Eco88I CYCGRG 1 cut(s) 1034
EcoICRI GAGCTC 1 cut(s) 171
EcoT14I CCWWGG 2 cut(s) 24, 186
EcoT22I ATGCAT 1 cut(s) 939
EcoT38I GRGCYC 1 cut(s) 173
ErhI CCWWGG 2 cut(s) 24, 186
FaeI CATG 5 cut(s) 190, 211, 376, 828, 981
FalI AAGNNNNNCTT 2 cut(s) 873, 905
FatI CATG 5 cut(s) 186, 207, 372, 824, 977
FblI GTMKAC 1 cut(s) 434
Fnu4HI GCNGC 5 cut(s) 205, 223, 422, 894, 1031
FokI GGATG 2 cut(s) 599, 662
FriOI GRGCYC 1 cut(s) 173
Fsp4HI GCNGC 5 cut(s) 205, 223, 422, 894, 1031
FspBI CTAG 1 cut(s) 626
GlaI GCGC 2 cut(s) 258, 425
GluI GCNGC 5 cut(s) 205, 223, 422, 894, 1031
GsaI CCCAGC 1 cut(s) 122
HaeII RGCGCY 1 cut(s) 260
HaeIII GGCC 5 cut(s) 519, 641, 700, 723, 1047
HapII CCGG 2 cut(s) 233, 520
HgaI GACGC 1 cut(s) 445
HhaI GCGC 2 cut(s) 259, 426
Hin1I GRCGYC 1 cut(s) 444
Hin1II CATG 5 cut(s) 190, 211, 376, 828, 981
Hin6I GCGC 2 cut(s) 257, 424
HinP1I GCGC 2 cut(s) 257, 424
HincII GTYRAC 2 cut(s) 435, 753
HindII GTYRAC 2 cut(s) 435, 753
HindIII AAGCTT 1 cut(s) 351
HinfI GANTC 9 cut(s) 307, 317, 323, 360, 365, 539, 594, 886, 945
HpaII CCGG 2 cut(s) 233, 520
HphI GGTGA 1 cut(s) 100
Hpy166II GTNNAC 2 cut(s) 435, 753
Hpy188I TCNGA 7 cut(s) 279, 322, 328, 456, 474, 606, 1019
Hpy188III TCNNGA 5 cut(s) 159, 373, 845, 956, 1036
Hpy8I GTNNAC 2 cut(s) 435, 753
Hpy99I CGWCG 3 cut(s) 436, 439, 449
HpyAV CCTTC 4 cut(s) 115, 265, 338, 907
HpyCH4III ACNGT 3 cut(s) 178, 479, 989
HpyCH4IV ACGT 4 cut(s) 5, 58, 444, 749
HpyCH4V TGCA 7 cut(s) 195, 207, 577, 747, 836, 937, 1000
HpyF10VI GCNNNNNNNGC 6 cut(s) 201, 418, 427, 436, 598, 744
HpyF3I CTNAG 4 cut(s) 252, 284, 297, 453
HpySE526I ACGT 4 cut(s) 5, 58, 444, 749
Hsp92I GRCGYC 1 cut(s) 444
Hsp92II CATG 5 cut(s) 190, 211, 376, 828, 981
HspAI GCGC 2 cut(s) 257, 424
KroI GCCGGC 1 cut(s) 232
KroNI GCCGGC 1 cut(s) 234
Kzo9I GATC 3 cut(s) 391, 706, 925
LmnI GCTCC 1 cut(s) 961
LpnPI CCDG 9 cut(s) 71, 104, 124, 246, 425, 533, 771, 881, 1061
Lsp1109I GCAGC 3 cut(s) 191, 880, 1017
LweI GCATC 1 cut(s) 946
MaeI CTAG 1 cut(s) 626
MaeII ACGT 4 cut(s) 5, 58, 444, 749
MaeIII GTNAC 1 cut(s) 287
MalI GATC 3 cut(s) 393, 708, 927
MboI GATC 3 cut(s) 391, 706, 925
MboII GAAGA 7 cut(s) 90, 154, 174, 274, 538, 888, 893
MhlI GDGCHC 1 cut(s) 173
MlsI TGGCCA 1 cut(s) 700
MluCI AATT 6 cut(s) 34, 64, 80, 196, 457, 848
MluNI TGGCCA 1 cut(s) 700
MlyI GAGTC 4 cut(s) 311, 369, 548, 603
MmeI TCCRAC 2 cut(s) 294, 712
Mox20I TGGCCA 1 cut(s) 700
Mph1103I ATGCAT 1 cut(s) 939
MreI CGCCGGCG 1 cut(s) 232
MroNI GCCGGC 1 cut(s) 232
MroXI GAANNNNTTC 3 cut(s) 59, 335, 885
MscI TGGCCA 1 cut(s) 700
MseI TTAA 3 cut(s) 45, 716, 903
Msp20I TGGCCA 1 cut(s) 700
MspA1I CMGCKG 1 cut(s) 1030
MspI CCGG 2 cut(s) 233, 520
Mva1269I GAATGC 1 cut(s) 838
MvnI CGCG 2 cut(s) 222, 424
MwoI GCNNNNNNNGC 6 cut(s) 201, 418, 427, 436, 598, 744
NaeI GCCGGC 1 cut(s) 234
NcoI CCATGG 1 cut(s) 186
NdeII GATC 3 cut(s) 391, 706, 925
NgoMIV GCCGGC 1 cut(s) 232
NlaIII CATG 5 cut(s) 190, 211, 376, 828, 981
NmuCI GTSAC 1 cut(s) 287
NsiI ATGCAT 1 cut(s) 939
NspI RCATGY 2 cut(s) 211, 828
PaeR7I CTCGAG 1 cut(s) 1034
PagI TCATGA 1 cut(s) 372
PceI AGGCCT 1 cut(s) 1047
PcsI WCGNNNNNNNCGW 1 cut(s) 332
PctI GAATGC 1 cut(s) 838
PdiI GCCGGC 1 cut(s) 234
PdmI GAANNNNTTC 3 cut(s) 59, 335, 885
PfeI GAWTC 5 cut(s) 307, 323, 365, 886, 945
PkrI GCNGC 5 cut(s) 206, 224, 423, 895, 1032
Ple19I CGATCG 1 cut(s) 394
PleI GAGTC 4 cut(s) 311, 368, 547, 602
PpsI GAGTC 4 cut(s) 311, 368, 547, 602
Psp124BI GAGCTC 1 cut(s) 173
Psp1406I AACGTT 1 cut(s) 58
PspFI CCCAGC 1 cut(s) 118
PstI CTGCAG 1 cut(s) 579
PvuI CGATCG 1 cut(s) 394
RsaI GTAC 2 cut(s) 216, 840
RsaNI GTAC 2 cut(s) 215, 839
SacI GAGCTC 1 cut(s) 173
SalI GTCGAC 1 cut(s) 433
SaqAI TTAA 3 cut(s) 45, 716, 903
SatI GCNGC 5 cut(s) 205, 223, 422, 894, 1031
Sau3AI GATC 3 cut(s) 391, 706, 925
ScaI AGTACT 1 cut(s) 840
SchI GAGTC 4 cut(s) 311, 369, 548, 603
SduI GDGCHC 1 cut(s) 173
SfaNI GCATC 1 cut(s) 946
SfcI CTRYAG 1 cut(s) 575
Sfr274I CTCGAG 1 cut(s) 1034
SgrAI CRCCGGYG 1 cut(s) 232
SgrDI CGTCGACG 1 cut(s) 433
SlaI CTCGAG 1 cut(s) 1034
SmiI ATTTAAAT 1 cut(s) 717
SmlI CTYRAG 2 cut(s) 956, 1034
SmoI CTYRAG 2 cut(s) 956, 1034
Sse9I AATT 6 cut(s) 34, 64, 80, 196, 457, 848
SseBI AGGCCT 1 cut(s) 1047
SsiI CCGC 5 cut(s) 222, 236, 422, 482, 1028
SspMI CTAG 1 cut(s) 626
SstI GAGCTC 1 cut(s) 173
StuI AGGCCT 1 cut(s) 1047
StyI CCWWGG 2 cut(s) 24, 186
SwaI ATTTAAAT 1 cut(s) 717
TaaI ACNGT 3 cut(s) 178, 479, 989
TaiI ACGT 4 cut(s) 8, 61, 447, 752
TaqI TCGA 7 cut(s) 173, 305, 363, 434, 524, 844, 1035
TasI AATT 6 cut(s) 34, 64, 80, 196, 457, 848
TatI WGTACW 1 cut(s) 838
TauI GCSGC 2 cut(s) 225, 424
TfiI GAWTC 5 cut(s) 307, 323, 365, 886, 945
Tru1I TTAA 3 cut(s) 45, 716, 903
Tru9I TTAA 3 cut(s) 45, 716, 903
TscAI CASTG 3 cut(s) 144, 292, 301
TseFI GTSAC 1 cut(s) 287
TseI GCWGC 3 cut(s) 204, 893, 1030
Tsp45I GTSAC 1 cut(s) 287
TspDTI ATGAA 3 cut(s) 92, 361, 389
TspGWI ACGGA 2 cut(s) 28, 650
TspRI CASTG 3 cut(s) 144, 292, 301
XapI RAATTY 3 cut(s) 34, 80, 457
XceI RCATGY 2 cut(s) 211, 828
XhoI CTCGAG 1 cut(s) 1034
XmiI GTMKAC 1 cut(s) 434
XmnI GAANNNNTTC 3 cut(s) 59, 335, 885
XspI CTAG 1 cut(s) 626
ZraI GACGTC 1 cut(s) 445
ZrmI AGTACT 1 cut(s) 840
Zsp2I ATGCAT 1 cut(s) 939
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.