Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001792

Physical Location & Seq

Genomic Coordinates Reverse (-)

22270413 .. 22273733

Gene Structure 3321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g31361.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGAGGATGGGCGAGTTTTGCCTCTGATACAGTATGTGGTGTCTCTTGCCGTCTCGGAGGCCATAAAGGATGTTTGTGATAGAAATGGCTTGCCATATATTGATGTTAGAATAAAATGGCCAAATGATCTTTATTTAAATGGCCTCAAAGTTGGAGGCATTTTATTTACGTCAACATACAAGTCAAAGAAGTTCAATGTGTCCGCTGGTATCGGCTTGAATATCGATAATGAGAAACCAACCACATGCTTGAATGCAGTACTTCGAGAATTGTCTGCTACAACATACCGGTTTAGAAGAGAAGAGATTCTTGCTGCCTTCTTTAACAAGTTTGAGAAGTTTTATGATCTTTTTATACATCAAGGATTCCAATCTCTTGAGGAGCTATACTATAAGACATGGCTACACAGTGGGCAGAGGGTTATTGTGCAGGAAAAAAATGACGACCAAGTGGTGGAGAACGTGGTCACTGTTCAGGGTTTGACATCTGCGGGATATTTGTTAGCTATTGATGATGACAATCAAATGCTACTTGAAGGACTGATTATTATCAGGTGGACTGGCACCATAAGTAAATTCCGCCAAAGCTTTTTCTGTACTACTGAAAGATTTAATGGACATCCTTTAGTACCAAACCCTGCCACCTCTCCGTCGTTGAAGTTTCAGGTCAAAAGTTCAAAATGTGTGAAGATATATGCTTTAATAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0001101 GO:0003674 GO:0003824 GO:0004077 GO:0004078 GO:0004080 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005652 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006807 GO:0006996 GO:0007584 GO:0008144 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009305 GO:0009374 GO:0009507 GO:0009536 GO:0009605 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0014070 GO:0016043 GO:0016363 GO:0016569 GO:0016570 GO:0016874 GO:0016879 GO:0018271 GO:0019538 GO:0019842 GO:0019899 GO:0031406 GO:0031667 GO:0031974 GO:0031981 GO:0033218 GO:0033273 GO:0033293 GO:0034399 GO:0036094 GO:0036211 GO:0042221 GO:0042493 GO:0042802 GO:0042803 GO:0042966 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0048037 GO:0050662 GO:0050896 GO:0051276 GO:0070013 GO:0070781 GO:0071110 GO:0071704 GO:0071840 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1901681 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00780 ko01100 map00780 map01100

Pfam Domains

Protein Families

BPL_C BPL_LplA_LipB

Protein Analysis

237

Amino Acids

26.83

Weight (kDa)

8.25

Isoelectric Point (pI)

35.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BPL_LplA_LipB	PF03099	3 - 74	1.3e-15	Biotin/lipoate A/B protein ligase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G37150 AT1G37150 AT1G37150 AT1G37150 AT1G37150 AT1G37150 AT1G37150 AT1G37150 AT1G37150 AT2G25710 AT2G25710 AT2G25710 AT2G25710 AT2G25710 AT2G25710 AT2G25710 AT2G25710
fragaria_vesca	FvH4_2g26260 FvH4_2g26260 FvH4_2g26260 FvH4_2g26260 FvH4_2g26260 FvH4_2g26260 FvH4_2g26260 FvH4_2g26260 FvH4_5g31361
malus_domestica	MD08G1169900.v1.1 MD15G1356700.v1.1
prunus_persica	Prupe.1G503900_v2.0.a1 Prupe.1G503900_v2.0.a1 Prupe.1G503900_v2.0.a1
pyrus_communis	pycom08g14530 pycom15g31890
rosa_chinensis	RchiOBHm_Chr6g0294871
rosa_laevigata	RLG00000011835
rosa_multiflora	Rmu_co8434131.1_g000001 Rmu_sc0008966.1_g000013 Rmu_sc0021726.1_g000002
rosa_roxburghii	Rroxscaffold_7G00172940
rosa_rugosa	Rorug06G0247400 Rorug06G0247500 Rorug06G0247600
rosa_samantha	Rh6AG361000 Rh6BG367600 Rh6CG374800 Rh6DG361500
rosa_wichuraiana	Rw6G031490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	563
AccB7I	CCANNNNNTGG	1 cut(s)	454
AciI	CCGC	3 cut(s)	204, 491, 580
AcoI	YGGCCR	1 cut(s)	119
AcsI	RAATTY	1 cut(s)	575
AfaI	GTAC	3 cut(s)	261, 598, 630
AfiI	CCNNNNNNNGG	1 cut(s)	454
AgeI	ACCGGT	1 cut(s)	288
AgsI	TTSAA	6 cut(s)	196, 220, 253, 536, 658, 678
AluBI	AGCT	3 cut(s)	385, 506, 588
AluI	AGCT	3 cut(s)	385, 506, 588
Alw26I	GTCTC	2 cut(s)	48, 58
AoxI	GGCC	3 cut(s)	60, 119, 142
ApeKI	GCWGC	1 cut(s)	314
ApoI	RAATTY	1 cut(s)	575
AsiGI	ACCGGT	1 cut(s)	288
Asp700I	GAANNNNTTC	1 cut(s)	306
BalI	TGGCCA	1 cut(s)	121
BanI	GGYRCC	1 cut(s)	563
BbvI	GCAGC	1 cut(s)	301
BccI	CCATC	1 cut(s)	2
BceAI	ACGGC	1 cut(s)	35
BcoDI	GTCTC	2 cut(s)	48, 58
BisI	GCNGC	1 cut(s)	315
BlsI	GCNGC	1 cut(s)	316
BmcAI	AGTACT	1 cut(s)	261
BmiI	GGNNCC	1 cut(s)	565
BpuEI	CTTGAG	1 cut(s)	398
Bsa29I	ATCGAT	1 cut(s)	225
BsaBI	GATNNNNATC	3 cut(s)	370, 519, 548
BsaWI	WCCGGW	1 cut(s)	288
Bsc4I	CCNNNNNNNGG	1 cut(s)	454
Bse118I	RCCGGY	1 cut(s)	288
Bse1I	ACTGG	1 cut(s)	565
Bse8I	GATNNNNATC	3 cut(s)	370, 519, 548
BseCI	ATCGAT	1 cut(s)	225
BseGI	GGATG	3 cut(s)	13, 76, 619
BseJI	GATNNNNATC	3 cut(s)	370, 519, 548
BseLI	CCNNNNNNNGG	1 cut(s)	454
BseNI	ACTGG	1 cut(s)	565
BseRI	GAGGAG	1 cut(s)	395
BseXI	GCAGC	1 cut(s)	301
BsgI	GTGCAG	1 cut(s)	449
BshFI	GGCC	3 cut(s)	62, 121, 144
BshNI	GGYRCC	1 cut(s)	563
BshTI	ACCGGT	1 cut(s)	288
BshVI	ATCGAT	1 cut(s)	225
BsiSI	CCGG	1 cut(s)	289
BslI	CCNNNNNNNGG	1 cut(s)	454
BsmAI	GTCTC	2 cut(s)	48, 58
BsmBI	CGTCTC	1 cut(s)	58
BsmI	GAATGC	1 cut(s)	259
BsnI	GGCC	3 cut(s)	62, 121, 144
Bsp143I	GATC	2 cut(s)	127, 346
BspACI	CCGC	3 cut(s)	204, 491, 580
BspANI	GGCC	3 cut(s)	62, 121, 144
BspDI	ATCGAT	1 cut(s)	225
BspLI	GGNNCC	1 cut(s)	565
BspT107I	GGYRCC	1 cut(s)	563
BsrFI	RCCGGY	1 cut(s)	288
BsrI	ACTGG	1 cut(s)	565
BssAI	RCCGGY	1 cut(s)	288
BssMI	GATC	2 cut(s)	127, 346
Bst4CI	ACNGT	3 cut(s)	33, 410, 472
Bst6I	CTCTTC	2 cut(s)	292, 297
BstC8I	GCNNGC	1 cut(s)	92
BstF5I	GGATG	3 cut(s)	13, 76, 619
BstKTI	GATC	2 cut(s)	130, 349
BstMAI	GTCTC	2 cut(s)	48, 58
BstMBI	GATC	2 cut(s)	127, 346
BstMWI	GCNNNNNNNGC	1 cut(s)	19
BstNSI	RCATGY	1 cut(s)	249
BstV1I	GCAGC	1 cut(s)	301
Bsu15I	ATCGAT	1 cut(s)	225
BsuRI	GGCC	3 cut(s)	62, 121, 144
BsuTUI	ATCGAT	1 cut(s)	225
BtsCI	GGATG	3 cut(s)	13, 76, 619
BtsIMutI	CAGTG	2 cut(s)	415, 468
Cac8I	GCNNGC	1 cut(s)	92
Cfr10I	RCCGGY	1 cut(s)	288
ClaI	ATCGAT	1 cut(s)	225
Csp6I	GTAC	3 cut(s)	260, 597, 629
CspAI	ACCGGT	1 cut(s)	288
CviAII	CATG	2 cut(s)	246, 399
CviJI	RGCY	9 cut(s)	62, 90, 121, 144, 216, 385, 403, 506, 588
CviKI_1	RGCY	9 cut(s)	62, 90, 121, 144, 216, 385, 403, 506, 588
CviQI	GTAC	3 cut(s)	260, 597, 629
DpnI	GATC	2 cut(s)	129, 348
DpnII	GATC	2 cut(s)	127, 346
DraI	TTTAAA	1 cut(s)	138
EaeI	YGGCCR	1 cut(s)	119
Eam1104I	CTCTTC	2 cut(s)	292, 297
EarI	CTCTTC	2 cut(s)	292, 297
EciI	GGCGGA	1 cut(s)	569
Esp3I	CGTCTC	1 cut(s)	58
FaeI	CATG	2 cut(s)	249, 402
FalI	AAGNNNNNCTT	2 cut(s)	294, 326
FatI	CATG	2 cut(s)	245, 398
FauI	CCCGC	1 cut(s)	484
Fnu4HI	GCNGC	1 cut(s)	315
FokI	GGATG	3 cut(s)	20, 83, 606
Fsp4HI	GCNGC	1 cut(s)	315
GluI	GCNGC	1 cut(s)	315
HaeIII	GGCC	3 cut(s)	62, 121, 144
HapII	CCGG	1 cut(s)	289
Hin1II	CATG	2 cut(s)	249, 402
HincII	GTYRAC	1 cut(s)	174
HindII	GTYRAC	1 cut(s)	174
HindIII	AAGCTT	1 cut(s)	586
HinfI	GANTC	2 cut(s)	307, 366
HpaII	CCGG	1 cut(s)	289
Hpy166II	GTNNAC	2 cut(s)	174, 558
Hpy188I	TCNGA	2 cut(s)	27, 58
Hpy188III	TCNNGA	2 cut(s)	266, 377
Hpy8I	GTNNAC	2 cut(s)	174, 558
Hpy99I	CGWCG	1 cut(s)	655
HpyAV	CCTTC	2 cut(s)	328, 530
HpyCH4III	ACNGT	3 cut(s)	33, 410, 472
HpyCH4IV	ACGT	2 cut(s)	170, 462
HpyCH4V	TGCA	2 cut(s)	257, 430
HpyF10VI	GCNNNNNNNGC	1 cut(s)	19
HpySE526I	ACGT	2 cut(s)	170, 462
Hsp92II	CATG	2 cut(s)	249, 402
Kzo9I	GATC	2 cut(s)	127, 346
LmnI	GCTCC	1 cut(s)	382
LpnPI	CCDG	8 cut(s)	192, 302, 416, 461, 538, 546, 650, 651
Lsp1109I	GCAGC	1 cut(s)	301
MaeII	ACGT	2 cut(s)	170, 462
MaeIII	GTNAC	1 cut(s)	466
MalI	GATC	2 cut(s)	129, 348
MboI	GATC	2 cut(s)	127, 346
MboII	GAAGA	3 cut(s)	309, 314, 700
MlsI	TGGCCA	1 cut(s)	121
MluCI	AATT	2 cut(s)	269, 575
MluNI	TGGCCA	1 cut(s)	121
MmeI	TCCRAC	1 cut(s)	133
MnlI	CCTC	7 cut(s)	33, 52, 149, 155, 373, 411, 655
Mox20I	TGGCCA	1 cut(s)	121
MroXI	GAANNNNTTC	1 cut(s)	306
MscI	TGGCCA	1 cut(s)	121
MseI	TTAA	4 cut(s)	137, 324, 612, 701
Msp20I	TGGCCA	1 cut(s)	121
MspA1I	CMGCKG	1 cut(s)	206
MspI	CCGG	1 cut(s)	289
Mva1269I	GAATGC	1 cut(s)	259
MwoI	GCNNNNNNNGC	1 cut(s)	19
NdeII	GATC	2 cut(s)	127, 346
NlaIII	CATG	2 cut(s)	249, 402
NlaIV	GGNNCC	1 cut(s)	565
NmuCI	GTSAC	1 cut(s)	466
NspI	RCATGY	1 cut(s)	249
PctI	GAATGC	1 cut(s)	259
PdmI	GAANNNNTTC	1 cut(s)	306
PfeI	GAWTC	2 cut(s)	307, 366
PflMI	CCANNNNNTGG	1 cut(s)	454
PinAI	ACCGGT	1 cut(s)	288
PkrI	GCNGC	1 cut(s)	316
PspN4I	GGNNCC	1 cut(s)	565
RsaI	GTAC	3 cut(s)	261, 598, 630
RsaNI	GTAC	3 cut(s)	260, 597, 629
SaqAI	TTAA	4 cut(s)	137, 324, 612, 701
SatI	GCNGC	1 cut(s)	315
Sau3AI	GATC	2 cut(s)	127, 346
ScaI	AGTACT	1 cut(s)	261
SetI	ASST	8 cut(s)	173, 387, 465, 508, 557, 590, 647, 669
SmiI	ATTTAAAT	1 cut(s)	138
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
Sse9I	AATT	2 cut(s)	269, 575
SsiI	CCGC	3 cut(s)	204, 491, 580
SwaI	ATTTAAAT	1 cut(s)	138
TaaI	ACNGT	3 cut(s)	33, 410, 472
TaiI	ACGT	2 cut(s)	173, 465
TaqI	TCGA	2 cut(s)	225, 265
TasI	AATT	2 cut(s)	269, 575
TatI	WGTACW	2 cut(s)	259, 596
TfiI	GAWTC	2 cut(s)	307, 366
Tru1I	TTAA	4 cut(s)	137, 324, 612, 701
Tru9I	TTAA	4 cut(s)	137, 324, 612, 701
TscAI	CASTG	2 cut(s)	415, 475
TseFI	GTSAC	1 cut(s)	466
TseI	GCWGC	1 cut(s)	314
Tsp45I	GTSAC	1 cut(s)	466
TspGWI	ACGGA	1 cut(s)	639
TspRI	CASTG	2 cut(s)	415, 475
Van91I	CCANNNNNTGG	1 cut(s)	454
XapI	RAATTY	1 cut(s)	575
XceI	RCATGY	1 cut(s)	249
XmnI	GAANNNNTTC	1 cut(s)	306
ZrmI	AGTACT	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.