Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001792

Physical Location & Seq

Genomic Coordinates Reverse (-)

39406267 .. 39421946

Gene Structure 15680 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0247400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGCATCTTGCCCTTGCTGTTTTGATGGACTTCTTTCTGCAAGTCACTGCATTTGTTGCGTTGATGTACTTTGACCTTTTGAGAGCTGAGGATGGCAGGTTTGATTGTTTTCCATGCATAAAAGTCTCGTCATCTTTTGTGGAATCCACTGAAGCCAGTAAAAGTACCCATGAGTTTTTGTTGTTGTCACGCGCAAATGATGAAGAGAGGTCTGATGTGGACACACTAGGCACATTGAATGGAGTGGAAGATCTTAAGGAAATTTCTCATGGTAAAGAGCCAGATAGGTGGGAGCTATTTAAATTAACACATCAAAGGAAAAGGTCCCAAGAACCAATCGATGCGGCATCTGCAAGGGCAATTGCGGATTTCGCAGAGGCTGAACAAAAGAGGCTAAGCATGAATGTTGACATCACTGCTCCAGAAATCCGTGAAGAAATGTATGTTGAAGTTCTTGGTAAGGAGAAGGGAAACAAAGTGAGAGGTGTTAGAGTAGGGGTTACTTGGGATGAAGTCCCTGGAATCCATGTTGAAGAGCGAGGAGTATCAAGAGAAGTAAAACAGTTGCAAGAGCAATTGGAAGAGCAAGTGAAAAAGGCACAAGAGAAAGAAGCACACATGATGGAGGAACTACAAAGCAAAATGGTTGAGCAAACAAAACGGATGGAACAAATTTTTGAAGTAAGGTGCATAGAGATGGCACTCCAAAAAATGGGAGAGATGTTTAAACAATGCAGAATATCAGTGGATACACAAGAAGACGTCATGCAAACAATGTCTCAGTTTGCTCGGGACACGTCTCAAAGGCCATCGACTGTTGCTTTTTCACCAGATGATGACGTCTACCGTCCCACAATGCCATTTGATTGCCCCAATATGCAAATGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0001101 GO:0003674 GO:0003824 GO:0004077 GO:0004078 GO:0004080 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005652 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006807 GO:0006996 GO:0007584 GO:0008144 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009305 GO:0009374 GO:0009507 GO:0009536 GO:0009605 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0014070 GO:0016043 GO:0016363 GO:0016569 GO:0016570 GO:0016874 GO:0016879 GO:0018271 GO:0019538 GO:0019842 GO:0019899 GO:0031406 GO:0031667 GO:0031974 GO:0031981 GO:0033218 GO:0033273 GO:0033293 GO:0034399 GO:0036094 GO:0036211 GO:0042221 GO:0042493 GO:0042802 GO:0042803 GO:0042966 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0048037 GO:0050662 GO:0050896 GO:0051276 GO:0070013 GO:0070781 GO:0071110 GO:0071704 GO:0071840 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1901681 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00780 ko01100 map00780 map01100

Pfam Domains

Protein Families

BPL_C BPL_LplA_LipB

Protein Analysis

296

Amino Acids

34.1

Weight (kDa)

4.88

Isoelectric Point (pI)

53.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sterol-sensing	PF12349	3 - 41	1.5e-06	Sterol-sensing domain of SREBP cleavage-activation
Transposase_24	PF03004	86 - 166	1.1e-07	Plant transposase (Ptta/En/Spm family)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G37150 AT1G37150 AT1G37150 AT1G37150 AT1G37150 AT1G37150 AT1G37150 AT1G37150 AT1G37150 AT2G25710 AT2G25710 AT2G25710 AT2G25710 AT2G25710 AT2G25710 AT2G25710 AT2G25710
fragaria_vesca	FvH4_2g26260 FvH4_2g26260 FvH4_2g26260 FvH4_2g26260 FvH4_2g26260 FvH4_2g26260 FvH4_2g26260 FvH4_2g26260 FvH4_5g31361
malus_domestica	MD08G1169900.v1.1 MD15G1356700.v1.1
prunus_persica	Prupe.1G503900_v2.0.a1 Prupe.1G503900_v2.0.a1 Prupe.1G503900_v2.0.a1
pyrus_communis	pycom08g14530 pycom15g31890
rosa_chinensis	RchiOBHm_Chr6g0294871
rosa_laevigata	RLG00000011835
rosa_multiflora	Rmu_co8434131.1_g000001 Rmu_sc0008966.1_g000013 Rmu_sc0021726.1_g000002
rosa_roxburghii	Rroxscaffold_7G00172940
rosa_rugosa	Rorug06G0247400 Rorug06G0247500 Rorug06G0247600
rosa_samantha	Rh6AG361000 Rh6BG367600 Rh6CG374800 Rh6DG361500
rosa_wichuraiana	Rw6G031490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	765, 843
Acc36I	ACCTGC	1 cut(s)	87
AccB7I	CCANNNNNTGG	1 cut(s)	712
AccI	GTMKAC	1 cut(s)	843
AccII	CGCG	1 cut(s)	192
AciI	CCGC	2 cut(s)	344, 365
AcsI	RAATTY	2 cut(s)	261, 672
AcuI	CTGAAG	1 cut(s)	171
AcyI	GRCGYC	2 cut(s)	762, 840
AfaI	GTAC	2 cut(s)	68, 166
AfiI	CCNNNNNNNGG	1 cut(s)	712
AflII	CTTAAG	1 cut(s)	254
AflIII	ACRYGT	1 cut(s)	795
AgsI	TTSAA	4 cut(s)	238, 449, 533, 680
AjiI	CACGTC	1 cut(s)	798
AjnI	CCWGG	1 cut(s)	517
AluBI	AGCT	2 cut(s)	86, 295
AluI	AGCT	2 cut(s)	86, 295
Alw26I	GTCTC	3 cut(s)	130, 783, 804
AlwNI	CAGNNNCTG	1 cut(s)	380
Ama87I	CYCGRG	1 cut(s)	789
AoxI	GGCC	1 cut(s)	806
ApoI	RAATTY	2 cut(s)	261, 672
AspLEI	GCGC	1 cut(s)	194
AspS9I	GGNCC	1 cut(s)	324
AsuHPI	GGTGA	1 cut(s)	819
AvaI	CYCGRG	1 cut(s)	789
AvaII	GGWCC	1 cut(s)	324
BbsI	GAAGAC	1 cut(s)	765
BbvCI	CCTCAGC	1 cut(s)	87
BccI	CCATC	6 cut(s)	19, 86, 616, 658, 691, 817
BciT130I	CCWGG	1 cut(s)	519
BciVI	GTATCC	1 cut(s)	742
BcoDI	GTCTC	3 cut(s)	130, 783, 804
BfaI	CTAG	1 cut(s)	227
BfrI	CTTAAG	1 cut(s)	254
BfuAI	ACCTGC	1 cut(s)	87
BfuI	GTATCC	1 cut(s)	742
BglII	AGATCT	1 cut(s)	250
BisI	GCNGC	1 cut(s)	345
BlpI	GCTNAGC	1 cut(s)	395
BlsI	GCNGC	1 cut(s)	346
Bme1390I	CCNGG	1 cut(s)	519
Bme18I	GGWCC	1 cut(s)	324
BmeT110I	CYCGRG	1 cut(s)	789
BmgBI	CACGTC	1 cut(s)	798
BmgT120I	GGNCC	1 cut(s)	324
BmiI	GGNNCC	1 cut(s)	326
BmrFI	CCNGG	1 cut(s)	519
BmsI	GCATC	3 cut(s)	13, 331, 356
BpiI	GAAGAC	1 cut(s)	765
BpmI	CTGGAG	1 cut(s)	405
Bpu10I	CCTNAGC	1 cut(s)	87
Bpu1102I	GCTNAGC	1 cut(s)	395
Bsa29I	ATCGAT	1 cut(s)	339
BsaHI	GRCGYC	2 cut(s)	762, 840
BsaJI	CCNNGG	1 cut(s)	517
Bsc4I	CCNNNNNNNGG	1 cut(s)	712
Bse1I	ACTGG	1 cut(s)	156
BseBI	CCWGG	1 cut(s)	519
BseCI	ATCGAT	1 cut(s)	339
BseDI	CCNNGG	1 cut(s)	517
BseGI	GGATG	3 cut(s)	97, 514, 669
BseLI	CCNNNNNNNGG	1 cut(s)	712
BseMII	CTCAG	2 cut(s)	78, 794
BseNI	ACTGG	1 cut(s)	156
BseRI	GAGGAG	1 cut(s)	555
Bsh1236I	CGCG	1 cut(s)	192
BshFI	GGCC	1 cut(s)	808
BshVI	ATCGAT	1 cut(s)	339
BsiHKCI	CYCGRG	1 cut(s)	789
BslFI	GGGAC	4 cut(s)	310, 500, 806, 834
BslI	CCNNNNNNNGG	1 cut(s)	712
BsmAI	GTCTC	3 cut(s)	130, 783, 804
BsmBI	CGTCTC	1 cut(s)	804
BsmFI	GGGAC	4 cut(s)	310, 500, 806, 834
BsnI	GGCC	1 cut(s)	808
BsoBI	CYCGRG	1 cut(s)	789
Bsp143I	GATC	1 cut(s)	250
Bsp1720I	GCTNAGC	1 cut(s)	395
BspACI	CCGC	2 cut(s)	344, 365
BspANI	GGCC	1 cut(s)	808
BspCNI	CTCAG	2 cut(s)	79, 793
BspDI	ATCGAT	1 cut(s)	339
BspFNI	CGCG	1 cut(s)	192
BspLI	GGNNCC	1 cut(s)	326
BspMI	ACCTGC	1 cut(s)	87
BspQI	GCTCTTC	2 cut(s)	528, 576
BspTI	CTTAAG	1 cut(s)	254
BsrI	ACTGG	1 cut(s)	156
BssECI	CCNNGG	1 cut(s)	517
BssMI	GATC	1 cut(s)	250
BssNI	GRCGYC	2 cut(s)	762, 840
Bst2UI	CCWGG	1 cut(s)	519
Bst4CI	ACNGT	3 cut(s)	564, 817, 848
Bst6I	CTCTTC	3 cut(s)	198, 528, 576
BstACI	GRCGYC	2 cut(s)	762, 840
BstAFI	CTTAAG	1 cut(s)	254
BstAPI	GCANNNNNTGC	1 cut(s)	56
BstDEI	CTNAG	3 cut(s)	87, 395, 780
BstF5I	GGATG	3 cut(s)	97, 514, 669
BstFNI	CGCG	1 cut(s)	192
BstHHI	GCGC	1 cut(s)	194
BstKTI	GATC	1 cut(s)	253
BstMAI	GTCTC	3 cut(s)	130, 783, 804
BstMBI	GATC	1 cut(s)	250
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 350, 371
BstNI	CCWGG	1 cut(s)	519
BstSCI	CCNGG	1 cut(s)	517
BstUI	CGCG	1 cut(s)	192
BstV2I	GAAGAC	1 cut(s)	765
BstX2I	RGATCY	1 cut(s)	250
BstXI	CCANNNNNNTGG	1 cut(s)	288
BstYI	RGATCY	1 cut(s)	250
Bsu15I	ATCGAT	1 cut(s)	339
BsuI	GTATCC	1 cut(s)	742
BsuRI	GGCC	1 cut(s)	808
BsuTUI	ATCGAT	1 cut(s)	339
BtrI	CACGTC	1 cut(s)	798
BtsCI	GGATG	3 cut(s)	97, 514, 669
BtsI	GCAGTG	2 cut(s)	45, 414
BtsIMutI	CAGTG	4 cut(s)	45, 147, 414, 750
BveI	ACCTGC	1 cut(s)	87
CaiI	CAGNNNCTG	1 cut(s)	380
CfoI	GCGC	1 cut(s)	194
Cfr13I	GGNCC	1 cut(s)	324
ClaI	ATCGAT	1 cut(s)	339
Csp6I	GTAC	2 cut(s)	67, 165
CviAII	CATG	7 cut(s)	114, 170, 269, 400, 527, 619, 766
CviJI	RGCY	7 cut(s)	86, 155, 280, 295, 380, 394, 808
CviKI_1	RGCY	7 cut(s)	86, 155, 280, 295, 380, 394, 808
CviQI	GTAC	2 cut(s)	67, 165
DdeI	CTNAG	3 cut(s)	87, 395, 780
DpnI	GATC	1 cut(s)	252
DpnII	GATC	1 cut(s)	250
DraI	TTTAAA	2 cut(s)	301, 727
Eam1104I	CTCTTC	3 cut(s)	198, 528, 576
EarI	CTCTTC	3 cut(s)	198, 528, 576
Eco47I	GGWCC	1 cut(s)	324
Eco57I	CTGAAG	1 cut(s)	171
Eco88I	CYCGRG	1 cut(s)	789
EcoO109I	RGGNCCY	1 cut(s)	324
EcoRII	CCWGG	1 cut(s)	517
EcoT22I	ATGCAT	2 cut(s)	6, 119
Esp3I	CGTCTC	1 cut(s)	804
FaeI	CATG	7 cut(s)	117, 173, 272, 403, 530, 622, 769
FaqI	GGGAC	4 cut(s)	310, 500, 806, 834
FatI	CATG	7 cut(s)	113, 169, 268, 399, 526, 618, 765
FblI	GTMKAC	1 cut(s)	843
Fnu4HI	GCNGC	1 cut(s)	345
FokI	GGATG	3 cut(s)	104, 521, 676
Fsp4HI	GCNGC	1 cut(s)	345
FspBI	CTAG	1 cut(s)	227
GlaI	GCGC	1 cut(s)	193
GluI	GCNGC	1 cut(s)	345
GsuI	CTGGAG	1 cut(s)	405
HaeIII	GGCC	1 cut(s)	808
HhaI	GCGC	1 cut(s)	194
Hin1I	GRCGYC	2 cut(s)	762, 840
Hin1II	CATG	7 cut(s)	117, 173, 272, 403, 530, 622, 769
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HincII	GTYRAC	1 cut(s)	409
HindII	GTYRAC	1 cut(s)	409
HinfI	GANTC	2 cut(s)	143, 522
HphI	GGTGA	1 cut(s)	819
Hpy166II	GTNNAC	3 cut(s)	220, 409, 844
Hpy188I	TCNGA	1 cut(s)	214
Hpy188III	TCNNGA	3 cut(s)	422, 549, 791
Hpy8I	GTNNAC	3 cut(s)	220, 409, 844
HpyAV	CCTTC	1 cut(s)	460
HpyCH4III	ACNGT	3 cut(s)	564, 817, 848
HpyCH4IV	ACGT	3 cut(s)	762, 797, 840
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 350, 371
HpyF3I	CTNAG	3 cut(s)	87, 395, 780
HpySE526I	ACGT	3 cut(s)	762, 797, 840
Hsp92I	GRCGYC	2 cut(s)	762, 840
Hsp92II	CATG	7 cut(s)	117, 173, 272, 403, 530, 622, 769
HspAI	GCGC	1 cut(s)	192
Kzo9I	GATC	1 cut(s)	250
LguI	GCTCTTC	2 cut(s)	528, 576
LmnI	GCTCC	2 cut(s)	292, 424
LpnPI	CCDG	7 cut(s)	82, 169, 294, 435, 504, 531, 843
LweI	GCATC	3 cut(s)	13, 331, 356
MaeI	CTAG	1 cut(s)	227
MaeII	ACGT	3 cut(s)	762, 797, 840
MaeIII	GTNAC	3 cut(s)	43, 186, 499
MalI	GATC	1 cut(s)	252
MboI	GATC	1 cut(s)	250
MboII	GAAGA	6 cut(s)	215, 260, 446, 545, 593, 770
MfeI	CAATTG	2 cut(s)	360, 575
MflI	RGATCY	1 cut(s)	250
MluCI	AATT	5 cut(s)	261, 302, 360, 575, 672
MnlI	CCTC	7 cut(s)	82, 201, 370, 384, 476, 533, 619
Mph1103I	ATGCAT	2 cut(s)	6, 119
MseI	TTAA	5 cut(s)	255, 300, 305, 726, 889
MslI	CAYNNNNRTG	1 cut(s)	695
MspCI	CTTAAG	1 cut(s)	254
MspR9I	CCNGG	1 cut(s)	519
MssI	GTTTAAAC	1 cut(s)	727
MunI	CAATTG	2 cut(s)	360, 575
MvaI	CCWGG	1 cut(s)	519
MvnI	CGCG	1 cut(s)	192
MwoI	GCNNNNNNNGC	3 cut(s)	56, 350, 371
NdeII	GATC	1 cut(s)	250
NlaIII	CATG	7 cut(s)	117, 173, 272, 403, 530, 622, 769
NlaIV	GGNNCC	1 cut(s)	326
NmuCI	GTSAC	2 cut(s)	43, 186
NsiI	ATGCAT	2 cut(s)	6, 119
PciSI	GCTCTTC	2 cut(s)	528, 576
PfeI	GAWTC	2 cut(s)	143, 522
PflMI	CCANNNNNTGG	1 cut(s)	712
PkrI	GCNGC	1 cut(s)	346
PmeI	GTTTAAAC	1 cut(s)	727
PpuMI	RGGWCCY	1 cut(s)	324
Psp5II	RGGWCCY	1 cut(s)	324
Psp6I	CCWGG	1 cut(s)	517
PspGI	CCWGG	1 cut(s)	517
PspN4I	GGNNCC	1 cut(s)	326
PspPI	GGNCC	1 cut(s)	324
PspPPI	RGGWCCY	1 cut(s)	324
PstNI	CAGNNNCTG	1 cut(s)	380
PsuI	RGATCY	1 cut(s)	250
RsaI	GTAC	2 cut(s)	68, 166
RsaNI	GTAC	2 cut(s)	67, 165
RseI	CAYNNNNRTG	1 cut(s)	695
SapI	GCTCTTC	2 cut(s)	528, 576
SaqAI	TTAA	5 cut(s)	255, 300, 305, 726, 889
SatI	GCNGC	1 cut(s)	345
Sau3AI	GATC	1 cut(s)	250
Sau96I	GGNCC	1 cut(s)	324
ScrFI	CCNGG	1 cut(s)	519
SfaNI	GCATC	3 cut(s)	13, 331, 356
SinI	GGWCC	1 cut(s)	324
SmiI	ATTTAAAT	1 cut(s)	301
SmiMI	CAYNNNNRTG	1 cut(s)	695
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	5 cut(s)	261, 302, 360, 575, 672
SsiI	CCGC	2 cut(s)	344, 365
SspMI	CTAG	1 cut(s)	227
StyD4I	CCNGG	1 cut(s)	517
SwaI	ATTTAAAT	1 cut(s)	301
TaaI	ACNGT	3 cut(s)	564, 817, 848
TaiI	ACGT	3 cut(s)	765, 800, 843
TaqI	TCGA	2 cut(s)	339, 812
TasI	AATT	5 cut(s)	261, 302, 360, 575, 672
TatI	WGTACW	1 cut(s)	66
TauI	GCSGC	1 cut(s)	347
TfiI	GAWTC	2 cut(s)	143, 522
Tru1I	TTAA	5 cut(s)	255, 300, 305, 726, 889
Tru9I	TTAA	5 cut(s)	255, 300, 305, 726, 889
TscAI	CASTG	4 cut(s)	52, 154, 421, 750
TseFI	GTSAC	2 cut(s)	43, 186
Tsp45I	GTSAC	2 cut(s)	43, 186
TspDTI	ATGAA	3 cut(s)	216, 416, 525
TspGWI	ACGGA	2 cut(s)	419, 676
TspRI	CASTG	4 cut(s)	52, 154, 421, 750
Van91I	CCANNNNNTGG	1 cut(s)	712
Vha464I	CTTAAG	1 cut(s)	254
VpaK11BI	GGWCC	1 cut(s)	324
XapI	RAATTY	2 cut(s)	261, 672
XcmI	CCANNNNNNNNNTGG	1 cut(s)	880
XmiI	GTMKAC	1 cut(s)	843
XspI	CTAG	1 cut(s)	227
ZraI	GACGTC	2 cut(s)	763, 841
Zsp2I	ATGCAT	2 cut(s)	6, 119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.