Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0001792

Physical Location & Seq

Genomic Coordinates Forward (+)

20353924 .. 20360153

Gene Structure 6230 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1169900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGCCCTTCGCATCCACCTCCTCGCTAGGGTTTTCCACCATAAGAAGCTCGCTGAAGAAGGCCATTTTCTCGAAGAAAGCGACTTGCAGTCTCTCTCTACCCGCCGCCTTTGCATCAGCCATGGATGGCAATTCGAACTGTAAGCTGGTTTTGTGCGGGAAATCGCCGCCGGAGAATGAAATTGCTATAGCATTGAAGAGCAGCAACGCTCTGAAGCTCCCTGAGAGCACCGAGATTTCAATTTTGTTACAGTCGGAATTCGAAAAGCCGGTCAAGGAGGATGCTTTCGGAGTCGACTCGTTCATGACCTCGCTCTCTACCAGTCGGTTCGGCAGGTTCCTCCTCTGGTCTCCACGCTTGCCTTCCACACACGACGTCGTTTCCAACAATTTTTGTGAGCTGCCGGTGGGTGCGGTTTGTGTAGCTGATGTTCAGTACAAAGGGAGAGGGCGGTCGAAGAATGTGTGGGAGTCTCCTCAGGGTTGCCTTCTGTTTTCCTTTACTTTGCAGATGGAGGATGGCCAAGTCGTGCCTCTCATACAGTACGTGGTTTCTCTTGCCGTCACGGAGGCAATAAAATATGTTTGTGATAAAAATGGCTTACCATATATTGATGTTAAAATAAAATGGCCAAATGATCTTTATTTAAATGGCCTCAAAGTGGGAGGTATTTTATGCACCTCAACGTATAAGTCAAAGCAGTTCAATGTCTCTGCTGGTGTAGGTTTGAACATTGATAATGAGAAACCAACCACATGTTTGAATGCATTTCTTAGAGAATTGTGTGTTACAACATACCGATTTAGAAGAGAAGATGTTCTTGCCACCTTCTTTAACAAATTTGAGATGTTATATGAAGTTTTTATAAATCAAGGATTCCAATCTCTTGAGGAGCTATACTATAGGACATGGTTACACAGTGGACAGAGAGTTATTGTGCAAGAAAAAACTGAGGATCAAGTGGTGGAAAATGTGGTCACTATTCAGGGTTTGACCTCATCAGGATATTTGTTGGCTATTGGTGATGACAATCAAATGTGTGAACTTCATCCTGATGGCAATAGTTTTGACTTCTTCAAAGGATTAGTCAGGCGAAAAATGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0001101 GO:0003674 GO:0003824 GO:0004077 GO:0004078 GO:0004080 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005652 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006807 GO:0006996 GO:0007584 GO:0008144 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009305 GO:0009374 GO:0009507 GO:0009536 GO:0009605 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0014070 GO:0016043 GO:0016363 GO:0016569 GO:0016570 GO:0016874 GO:0016879 GO:0018271 GO:0019538 GO:0019842 GO:0019899 GO:0031406 GO:0031667 GO:0031974 GO:0031981 GO:0033218 GO:0033273 GO:0033293 GO:0034399 GO:0036094 GO:0036211 GO:0042221 GO:0042493 GO:0042802 GO:0042803 GO:0042966 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0048037 GO:0050662 GO:0050896 GO:0051276 GO:0070013 GO:0070781 GO:0071110 GO:0071704 GO:0071840 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1901681 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00780 ko01100 map00780 map01100

Pfam Domains

Protein Families

BPL_C BPL_LplA_LipB

Protein Analysis

369

Amino Acids

41.02

Weight (kDa)

6.37

Isoelectric Point (pI)

39.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BPL_LplA_LipB	PF03099	117 - 244	1.4e-33	Biotin/lipoate A/B protein ligase family
BPL_C	PF02237	306 - 361	9.7e-08	Biotin protein ligase C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G37150 AT1G37150 AT1G37150 AT1G37150 AT1G37150 AT1G37150 AT1G37150 AT1G37150 AT1G37150 AT2G25710 AT2G25710 AT2G25710 AT2G25710 AT2G25710 AT2G25710 AT2G25710 AT2G25710
fragaria_vesca	FvH4_2g26260 FvH4_2g26260 FvH4_2g26260 FvH4_2g26260 FvH4_2g26260 FvH4_2g26260 FvH4_2g26260 FvH4_2g26260 FvH4_5g31361
malus_domestica	MD08G1169900.v1.1 MD15G1356700.v1.1
prunus_persica	Prupe.1G503900_v2.0.a1 Prupe.1G503900_v2.0.a1 Prupe.1G503900_v2.0.a1
pyrus_communis	pycom08g14530 pycom15g31890
rosa_chinensis	RchiOBHm_Chr6g0294871
rosa_laevigata	RLG00000011835
rosa_multiflora	Rmu_co8434131.1_g000001 Rmu_sc0008966.1_g000013 Rmu_sc0021726.1_g000002
rosa_roxburghii	Rroxscaffold_7G00172940
rosa_rugosa	Rorug06G0247400 Rorug06G0247500 Rorug06G0247600
rosa_samantha	Rh6AG361000 Rh6BG367600 Rh6CG374800 Rh6DG361500
rosa_wichuraiana	Rw6G031490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	866
AatII	GACGTC	1 cut(s)	378
Acc36I	ACCTGC	1 cut(s)	324
AccI	GTMKAC	1 cut(s)	294
AciI	CCGC	6 cut(s)	102, 105, 156, 167, 413, 451
AclWI	GGATC	1 cut(s)	963
AcoI	YGGCCR	2 cut(s)	520, 629
AcsI	RAATTY	2 cut(s)	257, 839
AcuI	CTGAAG	2 cut(s)	74, 233
AcyI	GRCGYC	1 cut(s)	375
AfaI	GTAC	2 cut(s)	437, 545
AfiI	CCNNNNNNNGG	2 cut(s)	27, 661
AflIII	ACRYGT	1 cut(s)	755
AgsI	TTSAA	6 cut(s)	196, 240, 706, 730, 763, 1078
AhdI	GACNNNNNGTC	1 cut(s)	87
AluBI	AGCT	6 cut(s)	48, 145, 217, 400, 425, 895
AluI	AGCT	6 cut(s)	48, 145, 217, 400, 425, 895
Alw21I	GWGCWC	1 cut(s)	230
Alw26I	GTCTC	4 cut(s)	95, 354, 477, 715
AlwI	GGATC	1 cut(s)	963
AoxI	GGCC	4 cut(s)	60, 520, 629, 652
ApeKI	GCWGC	2 cut(s)	201, 400
ApoI	RAATTY	2 cut(s)	257, 839
ArsI	GACNNNNNNTTYG	4 cut(s)	255, 287, 1071, 1103
Asp700I	GAANNNNTTC	1 cut(s)	816
AsuHPI	GGTGA	1 cut(s)	1034
AsuII	TTCGAA	2 cut(s)	134, 261
AxyI	CCTNAGG	1 cut(s)	477
BalI	TGGCCA	2 cut(s)	522, 631
Bbv12I	GWGCWC	1 cut(s)	230
BbvI	GCAGC	2 cut(s)	213, 387
BccI	CCATC	4 cut(s)	119, 505, 512, 1049
BceAI	ACGGC	1 cut(s)	545
BcoDI	GTCTC	4 cut(s)	95, 354, 477, 715
BfaI	CTAG	1 cut(s)	26
BfmI	CTRYAG	2 cut(s)	186, 901
BfuAI	ACCTGC	1 cut(s)	324
BisI	GCNGC	4 cut(s)	105, 167, 202, 401
BlsI	GCNGC	4 cut(s)	106, 168, 203, 402
BmeRI	GACNNNNNGTC	1 cut(s)	87
BmiI	GGNNCC	1 cut(s)	338
BmsI	GCATC	3 cut(s)	20, 122, 271
Bpu14I	TTCGAA	2 cut(s)	134, 261
BpuEI	CTTGAG	1 cut(s)	908
BsaAI	YACGTR	1 cut(s)	547
BsaBI	GATNNNNATC	2 cut(s)	880, 1029
BsaHI	GRCGYC	1 cut(s)	375
BsaI	GGTCTC	1 cut(s)	354
BsaJI	CCNNGG	1 cut(s)	120
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 661
Bse118I	RCCGGY	2 cut(s)	268, 403
Bse1I	ACTGG	1 cut(s)	321
Bse21I	CCTNAGG	1 cut(s)	477
Bse8I	GATNNNNATC	2 cut(s)	880, 1029
BseDI	CCNNGG	1 cut(s)	120
BseGI	GGATG	5 cut(s)	11, 130, 286, 523, 1048
BseJI	GATNNNNATC	2 cut(s)	880, 1029
BseLI	CCNNNNNNNGG	2 cut(s)	27, 661
BseMII	CTCAG	3 cut(s)	213, 491, 942
BseNI	ACTGG	1 cut(s)	321
BseRI	GAGGAG	4 cut(s)	10, 332, 465, 905
BseXI	GCAGC	2 cut(s)	213, 387
Bsh1285I	CGRYCG	1 cut(s)	455
BshFI	GGCC	4 cut(s)	62, 522, 631, 654
BsiEI	CGRYCG	1 cut(s)	455
BsiHKAI	GWGCWC	1 cut(s)	230
BsiSI	CCGG	3 cut(s)	170, 269, 404
BslI	CCNNNNNNNGG	2 cut(s)	27, 661
BsmAI	GTCTC	4 cut(s)	95, 354, 477, 715
BsmI	GAATGC	1 cut(s)	769
BsnI	GGCC	4 cut(s)	62, 522, 631, 654
Bso31I	GGTCTC	1 cut(s)	354
Bsp119I	TTCGAA	2 cut(s)	134, 261
Bsp1286I	GDGCHC	1 cut(s)	230
Bsp143I	GATC	2 cut(s)	637, 955
Bsp19I	CCATGG	1 cut(s)	120
BspACI	CCGC	6 cut(s)	102, 105, 156, 167, 413, 451
BspANI	GGCC	4 cut(s)	62, 522, 631, 654
BspCNI	CTCAG	3 cut(s)	214, 490, 943
BspHI	TCATGA	1 cut(s)	303
BspLI	GGNNCC	1 cut(s)	338
BspMI	ACCTGC	1 cut(s)	324
BspPI	GGATC	1 cut(s)	963
BspQI	GCTCTTC	1 cut(s)	191
BspT104I	TTCGAA	2 cut(s)	134, 261
BspTNI	GGTCTC	1 cut(s)	354
BsrFI	RCCGGY	2 cut(s)	268, 403
BsrI	ACTGG	1 cut(s)	321
BssAI	RCCGGY	2 cut(s)	268, 403
BssECI	CCNNGG	1 cut(s)	120
BssMI	GATC	2 cut(s)	637, 955
BssNI	GRCGYC	1 cut(s)	375
BssT1I	CCWWGG	1 cut(s)	120
Bst4CI	ACNGT	4 cut(s)	140, 252, 543, 920
Bst6I	CTCTTC	2 cut(s)	191, 802
BstACI	GRCGYC	1 cut(s)	375
BstBAI	YACGTR	1 cut(s)	547
BstBI	TTCGAA	2 cut(s)	134, 261
BstC8I	GCNNGC	2 cut(s)	50, 359
BstDEI	CTNAG	4 cut(s)	222, 477, 773, 951
BstDSI	CCRYGG	1 cut(s)	120
BstF5I	GGATG	5 cut(s)	11, 130, 286, 523, 1048
BstKTI	GATC	2 cut(s)	640, 958
BstMAI	GTCTC	4 cut(s)	95, 354, 477, 715
BstMBI	GATC	2 cut(s)	637, 955
BstMCI	CGRYCG	1 cut(s)	455
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstNSI	RCATGY	1 cut(s)	759
BstSFI	CTRYAG	2 cut(s)	186, 901
BstV1I	GCAGC	2 cut(s)	213, 387
Bsu36I	CCTNAGG	1 cut(s)	477
BsuRI	GGCC	4 cut(s)	62, 522, 631, 654
BtgI	CCRYGG	1 cut(s)	120
BtsCI	GGATG	5 cut(s)	11, 130, 286, 523, 1048
BtsIMutI	CAGTG	1 cut(s)	925
BveI	ACCTGC	1 cut(s)	324
Cac8I	GCNNGC	2 cut(s)	50, 359
CciI	TCATGA	1 cut(s)	303
Cfr10I	RCCGGY	2 cut(s)	268, 403
Csp6I	GTAC	2 cut(s)	436, 544
CviAII	CATG	4 cut(s)	121, 304, 756, 909
CviQI	GTAC	2 cut(s)	436, 544
DdeI	CTNAG	4 cut(s)	222, 477, 773, 951
DpnI	GATC	2 cut(s)	639, 957
DpnII	GATC	2 cut(s)	637, 955
DraI	TTTAAA	1 cut(s)	648
DriI	GACNNNNNGTC	1 cut(s)	87
EaeI	YGGCCR	2 cut(s)	520, 629
Eam1104I	CTCTTC	2 cut(s)	191, 802
Eam1105I	GACNNNNNGTC	1 cut(s)	87
EarI	CTCTTC	2 cut(s)	191, 802
Eco130I	CCWWGG	1 cut(s)	120
Eco31I	GGTCTC	1 cut(s)	354
Eco57I	CTGAAG	2 cut(s)	74, 233
Eco81I	CCTNAGG	1 cut(s)	477
EcoRI	GAATTC	1 cut(s)	257
EcoT14I	CCWWGG	1 cut(s)	120
EcoT22I	ATGCAT	1 cut(s)	769
ErhI	CCWWGG	1 cut(s)	120
FaeI	CATG	4 cut(s)	124, 307, 759, 912
FalI	AAGNNNNNCTT	2 cut(s)	804, 836
FatI	CATG	4 cut(s)	120, 303, 755, 908
FauI	CCCGC	2 cut(s)	109, 149
FblI	GTMKAC	1 cut(s)	294
Fnu4HI	GCNGC	4 cut(s)	105, 167, 202, 401
FokI	GGATG	4 cut(s)	137, 293, 530, 1035
Fsp4HI	GCNGC	4 cut(s)	105, 167, 202, 401
FspBI	CTAG	1 cut(s)	26
GluI	GCNGC	4 cut(s)	105, 167, 202, 401
HaeIII	GGCC	4 cut(s)	62, 522, 631, 654
HapII	CCGG	3 cut(s)	170, 269, 404
Hin1I	GRCGYC	1 cut(s)	375
Hin1II	CATG	4 cut(s)	124, 307, 759, 912
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HinfI	GANTC	4 cut(s)	291, 296, 470, 876
HpaII	CCGG	3 cut(s)	170, 269, 404
HphI	GGTGA	1 cut(s)	1034
Hpy166II	GTNNAC	3 cut(s)	295, 923, 1043
Hpy188I	TCNGA	3 cut(s)	213, 256, 290
Hpy188III	TCNNGA	5 cut(s)	70, 304, 887, 1002, 1052
Hpy8I	GTNNAC	3 cut(s)	295, 923, 1043
Hpy99I	CGWCG	2 cut(s)	377, 380
HpyAV	CCTTC	5 cut(s)	16, 52, 372, 497, 838
HpyCH4III	ACNGT	4 cut(s)	140, 252, 543, 920
HpyCH4IV	ACGT	3 cut(s)	375, 546, 686
HpyCH4V	TGCA	6 cut(s)	87, 113, 508, 678, 767, 940
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
HpyF3I	CTNAG	4 cut(s)	222, 477, 773, 951
HpySE526I	ACGT	3 cut(s)	375, 546, 686
Hsp92I	GRCGYC	1 cut(s)	375
Hsp92II	CATG	4 cut(s)	124, 307, 759, 912
Kzo9I	GATC	2 cut(s)	637, 955
LguI	GCTCTTC	1 cut(s)	191
LmnI	GCTCC	2 cut(s)	222, 892
Lsp1109I	GCAGC	2 cut(s)	213, 387
LweI	GCATC	3 cut(s)	20, 122, 271
MaeI	CTAG	1 cut(s)	26
MaeII	ACGT	3 cut(s)	375, 546, 686
MaeIII	GTNAC	5 cut(s)	246, 562, 787, 912, 976
MalI	GATC	2 cut(s)	639, 957
MboI	GATC	2 cut(s)	637, 955
MboII	GAAGA	7 cut(s)	67, 85, 208, 469, 819, 824, 1066
MhlI	GDGCHC	1 cut(s)	230
MlsI	TGGCCA	2 cut(s)	522, 631
MluCI	AATT	7 cut(s)	130, 180, 240, 257, 388, 779, 839
MluNI	TGGCCA	2 cut(s)	522, 631
MlyI	GAGTC	3 cut(s)	290, 300, 479
MmeI	TCCRAC	2 cut(s)	234, 408
Mox20I	TGGCCA	2 cut(s)	522, 631
Mph1103I	ATGCAT	1 cut(s)	769
MroXI	GAANNNNTTC	1 cut(s)	816
MscI	TGGCCA	2 cut(s)	522, 631
MseI	TTAA	3 cut(s)	618, 647, 834
MslI	CAYNNNNRTG	1 cut(s)	1053
Msp20I	TGGCCA	2 cut(s)	522, 631
MspI	CCGG	3 cut(s)	170, 269, 404
Mva1269I	GAATGC	1 cut(s)	769
MwoI	GCNNNNNNNGC	1 cut(s)	110
NcoI	CCATGG	1 cut(s)	120
NdeII	GATC	2 cut(s)	637, 955
NlaIII	CATG	4 cut(s)	124, 307, 759, 912
NlaIV	GGNNCC	1 cut(s)	338
NmuCI	GTSAC	2 cut(s)	562, 976
NsiI	ATGCAT	1 cut(s)	769
NspI	RCATGY	1 cut(s)	759
NspV	TTCGAA	2 cut(s)	134, 261
PagI	TCATGA	1 cut(s)	303
PciI	ACATGT	1 cut(s)	755
PciSI	GCTCTTC	1 cut(s)	191
PcsI	WCGNNNNNNNCGW	1 cut(s)	77
PctI	GAATGC	1 cut(s)	769
PdmI	GAANNNNTTC	1 cut(s)	816
PfeI	GAWTC	1 cut(s)	876
PkrI	GCNGC	4 cut(s)	106, 168, 203, 402
PleI	GAGTC	3 cut(s)	290, 299, 478
PpsI	GAGTC	3 cut(s)	290, 299, 478
Ppu21I	YACGTR	1 cut(s)	547
PscI	ACATGT	1 cut(s)	755
PsiI	TTATAA	1 cut(s)	866
PspN4I	GGNNCC	1 cut(s)	338
PsrI	GAACNNNNNNTAC	2 cut(s)	414, 446
RsaI	GTAC	2 cut(s)	437, 545
RsaNI	GTAC	2 cut(s)	436, 544
RseI	CAYNNNNRTG	1 cut(s)	1053
SalI	GTCGAC	1 cut(s)	293
SapI	GCTCTTC	1 cut(s)	191
SaqAI	TTAA	3 cut(s)	618, 647, 834
SatI	GCNGC	4 cut(s)	105, 167, 202, 401
Sau3AI	GATC	2 cut(s)	637, 955
SchI	GAGTC	3 cut(s)	290, 300, 479
SduI	GDGCHC	1 cut(s)	230
SfaNI	GCATC	3 cut(s)	20, 122, 271
SfcI	CTRYAG	2 cut(s)	186, 901
SfuI	TTCGAA	2 cut(s)	134, 261
SmiI	ATTTAAAT	1 cut(s)	648
SmiMI	CAYNNNNRTG	1 cut(s)	1053
SmlI	CTYRAG	1 cut(s)	887
SmoI	CTYRAG	1 cut(s)	887
Sse9I	AATT	7 cut(s)	130, 180, 240, 257, 388, 779, 839
SsiI	CCGC	6 cut(s)	102, 105, 156, 167, 413, 451
SspMI	CTAG	1 cut(s)	26
StyI	CCWWGG	1 cut(s)	120
SwaI	ATTTAAAT	1 cut(s)	648
TaaI	ACNGT	4 cut(s)	140, 252, 543, 920
TaiI	ACGT	3 cut(s)	378, 549, 689
TaqI	TCGA	5 cut(s)	71, 134, 261, 294, 455
TasI	AATT	7 cut(s)	130, 180, 240, 257, 388, 779, 839
TatI	WGTACW	1 cut(s)	435
TauI	GCSGC	2 cut(s)	107, 169
TfiI	GAWTC	1 cut(s)	876
Tru1I	TTAA	3 cut(s)	618, 647, 834
Tru9I	TTAA	3 cut(s)	618, 647, 834
TscAI	CASTG	1 cut(s)	925
TseFI	GTSAC	2 cut(s)	562, 976
TseI	GCWGC	2 cut(s)	201, 400
Tsp45I	GTSAC	2 cut(s)	562, 976
TspDTI	ATGAA	4 cut(s)	192, 292, 870, 1037
TspGWI	ACGGA	1 cut(s)	581
TspRI	CASTG	1 cut(s)	925
XapI	RAATTY	2 cut(s)	257, 839
XceI	RCATGY	1 cut(s)	759
XmiI	GTMKAC	1 cut(s)	294
XmnI	GAANNNNTTC	1 cut(s)	816
XspI	CTAG	1 cut(s)	26
ZraI	GACGTC	1 cut(s)	376
Zsp2I	ATGCAT	1 cut(s)	769

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.