Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001792

Physical Location & Seq

Genomic Coordinates Forward (+)

13040615 .. 13043869

Gene Structure 3255 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00172940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGAGGATGGGCGGATCGTGCCACTGATACAATATGTGGTCTCTCTAGCCATCACTGAGGCCATAAAGGATGTTTGTGAGAGGAATGGTTTGCCATATATTGATGTTAGAATAAAATGGCCAAATGATCTATATTTGAATGGCCTCAAAGTTGGAGGCATTTTATGCACGTCAACATATAAGTCGACGAAGTTCAATGTGTCTGCTGGTATCGGCTTGAATATCGATAATGAGAAACCAACTACATGCTTGAATGCAATTCTTAGAGAATTGTCTGCTACGACATACCAGTTTAGAAGAGAAGAGATTCTTGCTGCCTTCTTTAACAAATTTGAGAAATTTTATGATCTTTTTATAAATCAAGGATTTCAATCTCTAGAGGAGCTATACTATAAGACATGGCTACACAGTGGGCAGAGGATTATTGTGCAGGAAAAGAATGATGACCAGGTGGTGGAGAACGTGGTTACTGTTCAGGGTTTAACATCTGCGGGATATTTGTTAGCTATTGGTGATGACAATCAGATGTGTGAACTCCATCCTGATGGAAATAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0001101 GO:0003674 GO:0003824 GO:0004077 GO:0004078 GO:0004080 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005652 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006807 GO:0006996 GO:0007584 GO:0008144 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009305 GO:0009374 GO:0009507 GO:0009536 GO:0009605 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0014070 GO:0016043 GO:0016363 GO:0016569 GO:0016570 GO:0016874 GO:0016879 GO:0018271 GO:0019538 GO:0019842 GO:0019899 GO:0031406 GO:0031667 GO:0031974 GO:0031981 GO:0033218 GO:0033273 GO:0033293 GO:0034399 GO:0036094 GO:0036211 GO:0042221 GO:0042493 GO:0042802 GO:0042803 GO:0042966 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0048037 GO:0050662 GO:0050896 GO:0051276 GO:0070013 GO:0070781 GO:0071110 GO:0071704 GO:0071840 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1901681 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00780 ko01100 map00780 map01100

Pfam Domains

Protein Families

BPL_C BPL_LplA_LipB

Protein Analysis

185

Amino Acids

21.02

Weight (kDa)

4.98

Isoelectric Point (pI)

30.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BPL_LplA_LipB	PF03099	4 - 74	1.7e-16	Biotin/lipoate A/B protein ligase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G37150 AT1G37150 AT1G37150 AT1G37150 AT1G37150 AT1G37150 AT1G37150 AT1G37150 AT1G37150 AT2G25710 AT2G25710 AT2G25710 AT2G25710 AT2G25710 AT2G25710 AT2G25710 AT2G25710
fragaria_vesca	FvH4_2g26260 FvH4_2g26260 FvH4_2g26260 FvH4_2g26260 FvH4_2g26260 FvH4_2g26260 FvH4_2g26260 FvH4_2g26260 FvH4_5g31361
malus_domestica	MD08G1169900.v1.1 MD15G1356700.v1.1
prunus_persica	Prupe.1G503900_v2.0.a1 Prupe.1G503900_v2.0.a1 Prupe.1G503900_v2.0.a1
pyrus_communis	pycom08g14530 pycom15g31890
rosa_chinensis	RchiOBHm_Chr6g0294871
rosa_laevigata	RLG00000011835
rosa_multiflora	Rmu_co8434131.1_g000001 Rmu_sc0008966.1_g000013 Rmu_sc0021726.1_g000002
rosa_roxburghii	Rroxscaffold_7G00172940
rosa_rugosa	Rorug06G0247400 Rorug06G0247500 Rorug06G0247600
rosa_samantha	Rh6AG361000 Rh6BG367600 Rh6CG374800 Rh6DG361500
rosa_wichuraiana	Rw6G031490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	356
AccB7I	CCANNNNNTGG	1 cut(s)	454
AccI	GTMKAC	1 cut(s)	185
AciI	CCGC	2 cut(s)	13, 491
AclWI	GGATC	1 cut(s)	23
AcoI	YGGCCR	1 cut(s)	119
AcsI	RAATTY	2 cut(s)	329, 338
AfiI	CCNNNNNNNGG	1 cut(s)	454
AgsI	TTSAA	5 cut(s)	139, 196, 220, 253, 371
AjiI	CACGTC	1 cut(s)	171
AjnI	CCWGG	1 cut(s)	447
AluBI	AGCT	2 cut(s)	385, 506
AluI	AGCT	2 cut(s)	385, 506
Alw26I	GTCTC	1 cut(s)	46
AlwI	GGATC	1 cut(s)	23
AoxI	GGCC	3 cut(s)	60, 119, 142
ApeKI	GCWGC	1 cut(s)	314
ApoI	RAATTY	2 cut(s)	329, 338
Asp700I	GAANNNNTTC	1 cut(s)	306
AsuHPI	GGTGA	1 cut(s)	524
BalI	TGGCCA	1 cut(s)	121
BbvI	GCAGC	1 cut(s)	301
BccI	CCATC	4 cut(s)	2, 59, 539, 546
BciT130I	CCWGG	1 cut(s)	449
BcoDI	GTCTC	1 cut(s)	46
BfaI	CTAG	2 cut(s)	47, 377
BisI	GCNGC	1 cut(s)	315
BlsI	GCNGC	1 cut(s)	316
Bme1390I	CCNGG	1 cut(s)	449
BmgBI	CACGTC	1 cut(s)	171
BmrFI	CCNGG	1 cut(s)	449
Bsa29I	ATCGAT	1 cut(s)	225
BsaBI	GATNNNNATC	2 cut(s)	370, 519
BsaI	GGTCTC	1 cut(s)	46
Bsc4I	CCNNNNNNNGG	1 cut(s)	454
Bse1I	ACTGG	1 cut(s)	289
Bse8I	GATNNNNATC	2 cut(s)	370, 519
BseBI	CCWGG	1 cut(s)	449
BseCI	ATCGAT	1 cut(s)	225
BseGI	GGATG	3 cut(s)	13, 76, 538
BseJI	GATNNNNATC	2 cut(s)	370, 519
BseLI	CCNNNNNNNGG	1 cut(s)	454
BseMII	CTCAG	1 cut(s)	48
BseNI	ACTGG	1 cut(s)	289
BseRI	GAGGAG	1 cut(s)	395
BseXI	GCAGC	1 cut(s)	301
BsgI	GTGCAG	1 cut(s)	449
BshFI	GGCC	3 cut(s)	62, 121, 144
BshVI	ATCGAT	1 cut(s)	225
BslI	CCNNNNNNNGG	1 cut(s)	454
BsmAI	GTCTC	1 cut(s)	46
BsmI	GAATGC	1 cut(s)	259
BsnI	GGCC	3 cut(s)	62, 121, 144
Bso31I	GGTCTC	1 cut(s)	46
Bsp143I	GATC	3 cut(s)	15, 127, 346
BspACI	CCGC	2 cut(s)	13, 491
BspANI	GGCC	3 cut(s)	62, 121, 144
BspCNI	CTCAG	1 cut(s)	49
BspDI	ATCGAT	1 cut(s)	225
BspPI	GGATC	1 cut(s)	23
BspTNI	GGTCTC	1 cut(s)	46
BsrI	ACTGG	1 cut(s)	289
BssMI	GATC	3 cut(s)	15, 127, 346
Bst2UI	CCWGG	1 cut(s)	449
Bst4CI	ACNGT	2 cut(s)	410, 472
Bst6I	CTCTTC	2 cut(s)	292, 297
BstAPI	GCANNNNNTGC	1 cut(s)	165
BstDEI	CTNAG	2 cut(s)	57, 263
BstF5I	GGATG	3 cut(s)	13, 76, 538
BstKTI	GATC	3 cut(s)	18, 130, 349
BstMAI	GTCTC	1 cut(s)	46
BstMBI	GATC	3 cut(s)	15, 127, 346
BstMWI	GCNNNNNNNGC	2 cut(s)	19, 165
BstNI	CCWGG	1 cut(s)	449
BstNSI	RCATGY	1 cut(s)	249
BstSCI	CCNGG	1 cut(s)	447
BstV1I	GCAGC	1 cut(s)	301
BstXI	CCANNNNNNTGG	1 cut(s)	545
Bsu15I	ATCGAT	1 cut(s)	225
BsuRI	GGCC	3 cut(s)	62, 121, 144
BsuTUI	ATCGAT	1 cut(s)	225
BtrI	CACGTC	1 cut(s)	171
BtsCI	GGATG	3 cut(s)	13, 76, 538
BtsIMutI	CAGTG	3 cut(s)	23, 54, 415
ClaI	ATCGAT	1 cut(s)	225
CsiI	ACCWGGT	1 cut(s)	447
CviAII	CATG	2 cut(s)	246, 399
CviJI	RGCY	8 cut(s)	50, 62, 121, 144, 216, 385, 403, 506
CviKI_1	RGCY	8 cut(s)	50, 62, 121, 144, 216, 385, 403, 506
DdeI	CTNAG	2 cut(s)	57, 263
DpnI	GATC	3 cut(s)	17, 129, 348
DpnII	GATC	3 cut(s)	15, 127, 346
EaeI	YGGCCR	1 cut(s)	119
Eam1104I	CTCTTC	2 cut(s)	292, 297
EarI	CTCTTC	2 cut(s)	292, 297
EciI	GGCGGA	1 cut(s)	28
Eco31I	GGTCTC	1 cut(s)	46
EcoRII	CCWGG	1 cut(s)	447
FaeI	CATG	2 cut(s)	249, 402
FalI	AAGNNNNNCTT	2 cut(s)	294, 326
FatI	CATG	2 cut(s)	245, 398
FauI	CCCGC	1 cut(s)	484
FblI	GTMKAC	1 cut(s)	185
Fnu4HI	GCNGC	1 cut(s)	315
FokI	GGATG	3 cut(s)	20, 83, 525
Fsp4HI	GCNGC	1 cut(s)	315
FspBI	CTAG	2 cut(s)	47, 377
GluI	GCNGC	1 cut(s)	315
HaeIII	GGCC	3 cut(s)	62, 121, 144
Hin1II	CATG	2 cut(s)	249, 402
HincII	GTYRAC	2 cut(s)	174, 186
HindII	GTYRAC	2 cut(s)	174, 186
HinfI	GANTC	1 cut(s)	307
HphI	GGTGA	1 cut(s)	524
Hpy166II	GTNNAC	3 cut(s)	174, 186, 533
Hpy188I	TCNGA	1 cut(s)	525
Hpy188III	TCNNGA	2 cut(s)	377, 542
Hpy8I	GTNNAC	3 cut(s)	174, 186, 533
Hpy99I	CGWCG	1 cut(s)	190
HpyAV	CCTTC	1 cut(s)	328
HpyCH4III	ACNGT	2 cut(s)	410, 472
HpyCH4IV	ACGT	2 cut(s)	170, 462
HpyCH4V	TGCA	3 cut(s)	168, 257, 430
HpyF10VI	GCNNNNNNNGC	2 cut(s)	19, 165
HpyF3I	CTNAG	2 cut(s)	57, 263
HpySE526I	ACGT	2 cut(s)	170, 462
Hsp92II	CATG	2 cut(s)	249, 402
Kzo9I	GATC	3 cut(s)	15, 127, 346
LmnI	GCTCC	1 cut(s)	382
LpnPI	CCDG	6 cut(s)	192, 302, 416, 434, 461, 461
Lsp1109I	GCAGC	1 cut(s)	301
MabI	ACCWGGT	1 cut(s)	447
MaeI	CTAG	2 cut(s)	47, 377
MaeII	ACGT	2 cut(s)	170, 462
MaeIII	GTNAC	1 cut(s)	466
MalI	GATC	3 cut(s)	17, 129, 348
MboI	GATC	3 cut(s)	15, 127, 346
MboII	GAAGA	2 cut(s)	309, 314
MlsI	TGGCCA	1 cut(s)	121
MluCI	AATT	4 cut(s)	258, 269, 329, 338
MluNI	TGGCCA	1 cut(s)	121
MmeI	TCCRAC	1 cut(s)	133
MnlI	CCTC	6 cut(s)	52, 75, 149, 155, 373, 411
Mox20I	TGGCCA	1 cut(s)	121
MroXI	GAANNNNTTC	1 cut(s)	306
MscI	TGGCCA	1 cut(s)	121
MseI	TTAA	2 cut(s)	324, 482
MslI	CAYNNNNRTG	1 cut(s)	543
Msp20I	TGGCCA	1 cut(s)	121
MspR9I	CCNGG	1 cut(s)	449
Mva1269I	GAATGC	1 cut(s)	259
MvaI	CCWGG	1 cut(s)	449
MwoI	GCNNNNNNNGC	2 cut(s)	19, 165
NdeII	GATC	3 cut(s)	15, 127, 346
NlaIII	CATG	2 cut(s)	249, 402
NspI	RCATGY	1 cut(s)	249
PctI	GAATGC	1 cut(s)	259
PdmI	GAANNNNTTC	1 cut(s)	306
PfeI	GAWTC	1 cut(s)	307
PflMI	CCANNNNNTGG	1 cut(s)	454
PkrI	GCNGC	1 cut(s)	316
PsiI	TTATAA	1 cut(s)	356
Psp6I	CCWGG	1 cut(s)	447
PspGI	CCWGG	1 cut(s)	447
RseI	CAYNNNNRTG	1 cut(s)	543
SalI	GTCGAC	1 cut(s)	184
SaqAI	TTAA	2 cut(s)	324, 482
SatI	GCNGC	1 cut(s)	315
Sau3AI	GATC	3 cut(s)	15, 127, 346
ScrFI	CCNGG	1 cut(s)	449
SetI	ASST	6 cut(s)	173, 387, 453, 465, 508, 557
SexAI	ACCWGGT	1 cut(s)	447
SmiMI	CAYNNNNRTG	1 cut(s)	543
Sse9I	AATT	4 cut(s)	258, 269, 329, 338
SsiI	CCGC	2 cut(s)	13, 491
SspMI	CTAG	2 cut(s)	47, 377
StyD4I	CCNGG	1 cut(s)	447
TaaI	ACNGT	2 cut(s)	410, 472
TaiI	ACGT	2 cut(s)	173, 465
TaqI	TCGA	2 cut(s)	185, 225
TasI	AATT	4 cut(s)	258, 269, 329, 338
TfiI	GAWTC	1 cut(s)	307
Tru1I	TTAA	2 cut(s)	324, 482
Tru9I	TTAA	2 cut(s)	324, 482
TscAI	CASTG	3 cut(s)	30, 61, 415
TseI	GCWGC	1 cut(s)	314
TspRI	CASTG	3 cut(s)	30, 61, 415
Van91I	CCANNNNNTGG	1 cut(s)	454
XapI	RAATTY	2 cut(s)	329, 338
XbaI	TCTAGA	1 cut(s)	376
XceI	RCATGY	1 cut(s)	249
XmiI	GTMKAC	1 cut(s)	185
XmnI	GAANNNNTTC	1 cut(s)	306
XspI	CTAG	2 cut(s)	47, 377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.