Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001792

Physical Location & Seq

Genomic Coordinates Reverse (-)

55531085 .. 55536146

Gene Structure 5062 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G031490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGACGGAACTCAATGGGAAGCTTCGAGAAAGCTTCACATTCGAGACGGTGCAGTTTCCATTCAGACTTCTGCGAATTCACAAGAACCGATCCTTAGAAAGAAAATGCATGGATTGCAATTCAAGCTGTACGTTGGTGCTGCGCGGCAAATCGCCGGCGGAAAGCAAAATTGCTGAGGGGCTGAAGAACAGTAACGCTCTGAAGCTCAGTGACAACTGTGAGCTTTCAATTCTGTTAGACTCGGAATTGAAGAAACCGTTCAAGGAAGACGACGCTTTTGGAATCGACTCTTTCATGAACTCTCTCTCCACCGATCGGTTCGGTAGGTTGCTGCTTTGGTCGCCGCGCTTGCCGTCGACGCAGGACGTCGTTTCTCAGAATTTCTGTGAGCTTCCAAACGGTGCGGTTTGTGTTGCTGATGTTCAGTACAAAGGGCGAGGCAGGTCGAAGAATGTGTGGGAGTCTCCCAAAGGTTGCCTGCTGTTTTCCTTTACTCTGCAGATGGAGGATGGGCGGATCGTGCCACTGATACAATATGTGGTGTCTCTAGCCATCACTGAGGCCATAAAGGATGTTTGTGATAGGAATGGCTTGCCATATATTGATGTTAAAATAAAATGGCCAAATGATTTATATTTGAATGGCCTCAAAGTTGGAGGCATTTTATGCACGTCAACATATAAGTCGACGAAGTTCAATGTGTCTGCTGGTATCGGCTTGAATATCGATAATGAGAAACCAACTACATGCTTGAATGCAATTCTTAGAGAATTGTCTGCTACGACATACCAGTTTAGAAGAGAAGAGATTCTTGCTGCCTTCTTTAACAAATTTGAGAAATTTTATGATCTTTTTATAAATCAAGGATTTCAATCTCTAGAGGAGCTATACTATAAGACATGGCTACACAGTGGGCAGAGGATTATTGTGCAGGAAAAGAATGACGACCAGGTGGTGGAGAACGTGGTTACTGTTCAGGGTTTAACATCTGCGGGATATTTGTTAGCTATTGGTGATGACAATCAGATGTGTGAACTCCATCCTGATGGAAATAGTTTTGACTTCTTCAAGGGATTAGTCAGACAAAAACTTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0001101 GO:0003674 GO:0003824 GO:0004077 GO:0004078 GO:0004080 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005652 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006807 GO:0006996 GO:0007584 GO:0008144 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009305 GO:0009374 GO:0009507 GO:0009536 GO:0009605 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0014070 GO:0016043 GO:0016363 GO:0016569 GO:0016570 GO:0016874 GO:0016879 GO:0018271 GO:0019538 GO:0019842 GO:0019899 GO:0031406 GO:0031667 GO:0031974 GO:0031981 GO:0033218 GO:0033273 GO:0033293 GO:0034399 GO:0036094 GO:0036211 GO:0042221 GO:0042493 GO:0042802 GO:0042803 GO:0042966 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0048037 GO:0050662 GO:0050896 GO:0051276 GO:0070013 GO:0070781 GO:0071110 GO:0071704 GO:0071840 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1901681 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00780 ko01100 map00780 map01100

Pfam Domains

Protein Families

BPL_C BPL_LplA_LipB

Protein Analysis

365

Amino Acids

41.39

Weight (kDa)

6.47

Isoelectric Point (pI)

37.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BPL_LplA_LipB	PF03099	114 - 241	3.3e-34	Biotin/lipoate A/B protein ligase family
BPL_C	PF02237	303 - 358	2e-06	Biotin protein ligase C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G37150 AT1G37150 AT1G37150 AT1G37150 AT1G37150 AT1G37150 AT1G37150 AT1G37150 AT1G37150 AT2G25710 AT2G25710 AT2G25710 AT2G25710 AT2G25710 AT2G25710 AT2G25710 AT2G25710
fragaria_vesca	FvH4_2g26260 FvH4_2g26260 FvH4_2g26260 FvH4_2g26260 FvH4_2g26260 FvH4_2g26260 FvH4_2g26260 FvH4_2g26260 FvH4_5g31361
malus_domestica	MD08G1169900.v1.1 MD15G1356700.v1.1
prunus_persica	Prupe.1G503900_v2.0.a1 Prupe.1G503900_v2.0.a1 Prupe.1G503900_v2.0.a1
pyrus_communis	pycom08g14530 pycom15g31890
rosa_chinensis	RchiOBHm_Chr6g0294871
rosa_laevigata	RLG00000011835
rosa_multiflora	Rmu_co8434131.1_g000001 Rmu_sc0008966.1_g000013 Rmu_sc0021726.1_g000002
rosa_roxburghii	Rroxscaffold_7G00172940
rosa_rugosa	Rorug06G0247400 Rorug06G0247500 Rorug06G0247600
rosa_samantha	Rh6AG361000 Rh6BG367600 Rh6CG374800 Rh6DG361500
rosa_wichuraiana	Rw6G031490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	857
AatII	GACGTC	1 cut(s)	369
Acc36I	ACCTGC	1 cut(s)	432
AccB7I	CCANNNNNTGG	1 cut(s)	955
AccI	GTMKAC	2 cut(s)	356, 686
AccII	CGCG	2 cut(s)	144, 346
AciI	CCGC	6 cut(s)	144, 158, 344, 404, 514, 992
AclWI	GGATC	2 cut(s)	84, 524
AcoI	YGGCCR	1 cut(s)	620
AcsI	RAATTY	4 cut(s)	75, 379, 830, 839
AcuI	CTGAAG	2 cut(s)	203, 221
AcyI	GRCGYC	1 cut(s)	366
AfaI	GTAC	2 cut(s)	130, 428
AfiI	CCNNNNNNNGG	2 cut(s)	315, 955
AjiI	CACGTC	1 cut(s)	672
AjnI	CCWGG	1 cut(s)	948
AloI	GAACNNNNNNTCC	2 cut(s)	290, 322
AluBI	AGCT	8 cut(s)	22, 33, 126, 205, 223, 391, 886, 1007
AluI	AGCT	8 cut(s)	22, 33, 126, 205, 223, 391, 886, 1007
Alw26I	GTCTC	3 cut(s)	38, 468, 549
AlwI	GGATC	2 cut(s)	84, 524
AoxI	GGCC	3 cut(s)	561, 620, 643
ApeKI	GCWGC	3 cut(s)	139, 331, 815
ApoI	RAATTY	4 cut(s)	75, 379, 830, 839
ArsI	GACNNNNNNTTYG	2 cut(s)	260, 292
Asp700I	GAANNNNTTC	2 cut(s)	257, 807
AspLEI	GCGC	2 cut(s)	144, 348
AsuHPI	GGTGA	1 cut(s)	1025
BalI	TGGCCA	1 cut(s)	622
BbsI	GAAGAC	1 cut(s)	273
BbvCI	CCTCAGC	1 cut(s)	174
BbvI	GCAGC	3 cut(s)	126, 318, 802
BccI	CCATC	5 cut(s)	496, 503, 560, 1040, 1047
BceAI	ACGGC	1 cut(s)	337
BciT130I	CCWGG	1 cut(s)	950
BcoDI	GTCTC	3 cut(s)	38, 468, 549
BfaI	CTAG	2 cut(s)	548, 878
BfmI	CTRYAG	1 cut(s)	497
BfuAI	ACCTGC	1 cut(s)	432
BisI	GCNGC	5 cut(s)	140, 145, 332, 344, 816
BlsI	GCNGC	5 cut(s)	141, 146, 333, 345, 817
Bme1390I	CCNGG	1 cut(s)	950
BmgBI	CACGTC	1 cut(s)	672
BmrFI	CCNGG	1 cut(s)	950
BpiI	GAAGAC	1 cut(s)	273
Bpu10I	CCTNAGC	1 cut(s)	174
Bsa29I	ATCGAT	1 cut(s)	726
BsaBI	GATNNNNATC	2 cut(s)	871, 1020
BsaHI	GRCGYC	1 cut(s)	366
BsaXI	ACNNNNNCTCC	2 cut(s)	290, 320
Bsc4I	CCNNNNNNNGG	2 cut(s)	315, 955
Bse118I	RCCGGY	1 cut(s)	154
Bse1I	ACTGG	1 cut(s)	790
Bse8I	GATNNNNATC	2 cut(s)	871, 1020
BseBI	CCWGG	1 cut(s)	950
BseCI	ATCGAT	1 cut(s)	726
BseGI	GGATG	3 cut(s)	514, 577, 1039
BseJI	GATNNNNATC	2 cut(s)	871, 1020
BseLI	CCNNNNNNNGG	2 cut(s)	315, 955
BseMII	CTCAG	4 cut(s)	165, 220, 389, 549
BseNI	ACTGG	1 cut(s)	790
BseRI	GAGGAG	1 cut(s)	896
BseXI	GCAGC	3 cut(s)	126, 318, 802
BsgI	GTGCAG	2 cut(s)	71, 950
Bsh1236I	CGCG	2 cut(s)	144, 346
Bsh1285I	CGRYCG	1 cut(s)	316
BshFI	GGCC	3 cut(s)	563, 622, 645
BshVI	ATCGAT	1 cut(s)	726
BsiEI	CGRYCG	1 cut(s)	316
BsiSI	CCGG	1 cut(s)	155
BslI	CCNNNNNNNGG	2 cut(s)	315, 955
BsmAI	GTCTC	3 cut(s)	38, 468, 549
BsmBI	CGTCTC	1 cut(s)	38
BsmI	GAATGC	1 cut(s)	760
BsnI	GGCC	3 cut(s)	563, 622, 645
Bsp143I	GATC	4 cut(s)	89, 313, 516, 847
BspACI	CCGC	6 cut(s)	144, 158, 344, 404, 514, 992
BspANI	GGCC	3 cut(s)	563, 622, 645
BspCNI	CTCAG	4 cut(s)	166, 219, 388, 550
BspDI	ATCGAT	1 cut(s)	726
BspFNI	CGCG	2 cut(s)	144, 346
BspHI	TCATGA	1 cut(s)	294
BspMAI	CTGCAG	1 cut(s)	501
BspMI	ACCTGC	1 cut(s)	432
BspPI	GGATC	2 cut(s)	84, 524
BsrFI	RCCGGY	1 cut(s)	154
BsrI	ACTGG	1 cut(s)	790
BssAI	RCCGGY	1 cut(s)	154
BssMI	GATC	4 cut(s)	89, 313, 516, 847
BssNI	GRCGYC	1 cut(s)	366
Bst2UI	CCWGG	1 cut(s)	950
Bst4CI	ACNGT	7 cut(s)	49, 191, 218, 258, 401, 911, 973
Bst6I	CTCTTC	2 cut(s)	793, 798
BstACI	GRCGYC	1 cut(s)	366
BstAPI	GCANNNNNTGC	2 cut(s)	114, 666
BstC8I	GCNNGC	4 cut(s)	156, 350, 479, 593
BstDEI	CTNAG	6 cut(s)	94, 174, 206, 375, 558, 764
BstF5I	GGATG	3 cut(s)	514, 577, 1039
BstFNI	CGCG	2 cut(s)	144, 346
BstHHI	GCGC	2 cut(s)	144, 348
BstKTI	GATC	4 cut(s)	92, 316, 519, 850
BstMAI	GTCTC	3 cut(s)	38, 468, 549
BstMBI	GATC	4 cut(s)	89, 313, 516, 847
BstMCI	CGRYCG	1 cut(s)	316
BstMWI	GCNNNNNNNGC	7 cut(s)	114, 123, 340, 349, 358, 520, 666
BstNI	CCWGG	1 cut(s)	950
BstNSI	RCATGY	1 cut(s)	750
BstSCI	CCNGG	1 cut(s)	948
BstSFI	CTRYAG	1 cut(s)	497
BstUI	CGCG	2 cut(s)	144, 346
BstV1I	GCAGC	3 cut(s)	126, 318, 802
BstV2I	GAAGAC	1 cut(s)	273
BstXI	CCANNNNNNTGG	1 cut(s)	1046
Bsu15I	ATCGAT	1 cut(s)	726
BsuRI	GGCC	3 cut(s)	563, 622, 645
BsuTUI	ATCGAT	1 cut(s)	726
BtrI	CACGTC	1 cut(s)	672
BtsCI	GGATG	3 cut(s)	514, 577, 1039
BtsIMutI	CAGTG	4 cut(s)	214, 524, 555, 916
BveI	ACCTGC	1 cut(s)	432
Cac8I	GCNNGC	4 cut(s)	156, 350, 479, 593
CciI	TCATGA	1 cut(s)	294
CfoI	GCGC	2 cut(s)	144, 348
Cfr10I	RCCGGY	1 cut(s)	154
ClaI	ATCGAT	1 cut(s)	726
CseI	GACGC	2 cut(s)	281, 367
CsiI	ACCWGGT	1 cut(s)	948
Csp6I	GTAC	2 cut(s)	129, 427
CviAII	CATG	4 cut(s)	109, 295, 747, 900
CviQI	GTAC	2 cut(s)	129, 427
DdeI	CTNAG	6 cut(s)	94, 174, 206, 375, 558, 764
DpnI	GATC	4 cut(s)	91, 315, 518, 849
DpnII	GATC	4 cut(s)	89, 313, 516, 847
EaeI	YGGCCR	1 cut(s)	620
Eam1104I	CTCTTC	2 cut(s)	793, 798
EarI	CTCTTC	2 cut(s)	793, 798
EciI	GGCGGA	2 cut(s)	173, 529
Eco57I	CTGAAG	2 cut(s)	203, 221
EcoRI	GAATTC	1 cut(s)	75
EcoRII	CCWGG	1 cut(s)	948
EcoT22I	ATGCAT	1 cut(s)	110
Esp3I	CGTCTC	1 cut(s)	38
FaeI	CATG	4 cut(s)	112, 298, 750, 903
FalI	AAGNNNNNCTT	2 cut(s)	795, 827
FatI	CATG	4 cut(s)	108, 294, 746, 899
FauI	CCCGC	1 cut(s)	985
FblI	GTMKAC	2 cut(s)	356, 686
Fnu4HI	GCNGC	5 cut(s)	140, 145, 332, 344, 816
FokI	GGATG	3 cut(s)	521, 584, 1026
Fsp4HI	GCNGC	5 cut(s)	140, 145, 332, 344, 816
FspBI	CTAG	2 cut(s)	548, 878
GlaI	GCGC	2 cut(s)	143, 347
GluI	GCNGC	5 cut(s)	140, 145, 332, 344, 816
HaeIII	GGCC	3 cut(s)	563, 622, 645
HapII	CCGG	1 cut(s)	155
HgaI	GACGC	2 cut(s)	281, 367
HhaI	GCGC	2 cut(s)	144, 348
Hin1I	GRCGYC	1 cut(s)	366
Hin1II	CATG	4 cut(s)	112, 298, 750, 903
Hin6I	GCGC	2 cut(s)	142, 346
HinP1I	GCGC	2 cut(s)	142, 346
HincII	GTYRAC	3 cut(s)	357, 675, 687
HindII	GTYRAC	3 cut(s)	357, 675, 687
HindIII	AAGCTT	2 cut(s)	20, 31
HinfI	GANTC	5 cut(s)	239, 282, 287, 461, 808
HpaII	CCGG	1 cut(s)	155
HphI	GGTGA	1 cut(s)	1025
Hpy166II	GTNNAC	4 cut(s)	357, 675, 687, 1034
Hpy188I	TCNGA	6 cut(s)	65, 201, 244, 378, 1026, 1082
Hpy188III	TCNNGA	5 cut(s)	26, 43, 295, 878, 1043
Hpy8I	GTNNAC	4 cut(s)	357, 675, 687, 1034
Hpy99I	CGWCG	5 cut(s)	275, 358, 361, 371, 691
HpyAV	CCTTC	1 cut(s)	829
HpyCH4III	ACNGT	7 cut(s)	49, 191, 218, 258, 401, 911, 973
HpyCH4IV	ACGT	4 cut(s)	131, 366, 671, 963
HpyCH4V	TGCA	7 cut(s)	52, 108, 117, 499, 669, 758, 931
HpyF10VI	GCNNNNNNNGC	7 cut(s)	114, 123, 340, 349, 358, 520, 666
HpyF3I	CTNAG	6 cut(s)	94, 174, 206, 375, 558, 764
HpySE526I	ACGT	4 cut(s)	131, 366, 671, 963
Hsp92I	GRCGYC	1 cut(s)	366
Hsp92II	CATG	4 cut(s)	112, 298, 750, 903
HspAI	GCGC	2 cut(s)	142, 346
KroI	GCCGGC	1 cut(s)	154
KroNI	GCCGGC	1 cut(s)	156
Kzo9I	GATC	4 cut(s)	89, 313, 516, 847
LmnI	GCTCC	1 cut(s)	883
Lsp1109I	GCAGC	3 cut(s)	126, 318, 802
MabI	ACCWGGT	1 cut(s)	948
MaeI	CTAG	2 cut(s)	548, 878
MaeII	ACGT	4 cut(s)	131, 366, 671, 963
MaeIII	GTNAC	3 cut(s)	191, 209, 967
MalI	GATC	4 cut(s)	91, 315, 518, 849
MboI	GATC	4 cut(s)	89, 313, 516, 847
MboII	GAAGA	7 cut(s)	196, 262, 278, 460, 810, 815, 1057
MlsI	TGGCCA	1 cut(s)	622
MluNI	TGGCCA	1 cut(s)	622
MlyI	GAGTC	3 cut(s)	233, 281, 470
MmeI	TCCRAC	1 cut(s)	634
MnlI	CCTC	8 cut(s)	169, 431, 499, 553, 650, 656, 874, 912
Mox20I	TGGCCA	1 cut(s)	622
Mph1103I	ATGCAT	1 cut(s)	110
MreI	CGCCGGCG	1 cut(s)	154
MroNI	GCCGGC	1 cut(s)	154
MroXI	GAANNNNTTC	2 cut(s)	257, 807
MscI	TGGCCA	1 cut(s)	622
MseI	TTAA	3 cut(s)	609, 825, 983
MslI	CAYNNNNRTG	1 cut(s)	1044
Msp20I	TGGCCA	1 cut(s)	622
MspI	CCGG	1 cut(s)	155
MspR9I	CCNGG	1 cut(s)	950
Mva1269I	GAATGC	1 cut(s)	760
MvaI	CCWGG	1 cut(s)	950
MvnI	CGCG	2 cut(s)	144, 346
MwoI	GCNNNNNNNGC	7 cut(s)	114, 123, 340, 349, 358, 520, 666
NaeI	GCCGGC	1 cut(s)	156
NdeII	GATC	4 cut(s)	89, 313, 516, 847
NgoMIV	GCCGGC	1 cut(s)	154
NlaIII	CATG	4 cut(s)	112, 298, 750, 903
NmuCI	GTSAC	1 cut(s)	209
NsiI	ATGCAT	1 cut(s)	110
NspI	RCATGY	1 cut(s)	750
PagI	TCATGA	1 cut(s)	294
PctI	GAATGC	1 cut(s)	760
PdiI	GCCGGC	1 cut(s)	156
PdmI	GAANNNNTTC	2 cut(s)	257, 807
PfeI	GAWTC	2 cut(s)	282, 808
PflMI	CCANNNNNTGG	1 cut(s)	955
PkrI	GCNGC	5 cut(s)	141, 146, 333, 345, 817
Ple19I	CGATCG	1 cut(s)	316
PleI	GAGTC	3 cut(s)	233, 281, 469
PpsI	GAGTC	3 cut(s)	233, 281, 469
PsiI	TTATAA	1 cut(s)	857
Psp6I	CCWGG	1 cut(s)	948
PspGI	CCWGG	1 cut(s)	948
PstI	CTGCAG	1 cut(s)	501
PvuI	CGATCG	1 cut(s)	316
RsaI	GTAC	2 cut(s)	130, 428
RsaNI	GTAC	2 cut(s)	129, 427
RseI	CAYNNNNRTG	1 cut(s)	1044
SalI	GTCGAC	2 cut(s)	355, 685
SaqAI	TTAA	3 cut(s)	609, 825, 983
SatI	GCNGC	5 cut(s)	140, 145, 332, 344, 816
Sau3AI	GATC	4 cut(s)	89, 313, 516, 847
SchI	GAGTC	3 cut(s)	233, 281, 470
ScrFI	CCNGG	1 cut(s)	950
SexAI	ACCWGGT	1 cut(s)	948
SfcI	CTRYAG	1 cut(s)	497
SgrAI	CRCCGGYG	1 cut(s)	154
SgrDI	CGTCGACG	1 cut(s)	355
SmiMI	CAYNNNNRTG	1 cut(s)	1044
SsiI	CCGC	6 cut(s)	144, 158, 344, 404, 514, 992
SspMI	CTAG	2 cut(s)	548, 878
StyD4I	CCNGG	1 cut(s)	948
TaaI	ACNGT	7 cut(s)	49, 191, 218, 258, 401, 911, 973
TaiI	ACGT	4 cut(s)	134, 369, 674, 966
TaqI	TCGA	7 cut(s)	25, 42, 285, 356, 446, 686, 726
TatI	WGTACW	1 cut(s)	426
TauI	GCSGC	2 cut(s)	147, 346
TfiI	GAWTC	2 cut(s)	282, 808
Tru1I	TTAA	3 cut(s)	609, 825, 983
Tru9I	TTAA	3 cut(s)	609, 825, 983
TscAI	CASTG	4 cut(s)	214, 531, 562, 916
TseFI	GTSAC	1 cut(s)	209
TseI	GCWGC	3 cut(s)	139, 331, 815
Tsp45I	GTSAC	1 cut(s)	209
TspDTI	ATGAA	2 cut(s)	283, 311
TspGWI	ACGGA	1 cut(s)	20
TspRI	CASTG	4 cut(s)	214, 531, 562, 916
Van91I	CCANNNNNTGG	1 cut(s)	955
XapI	RAATTY	4 cut(s)	75, 379, 830, 839
XbaI	TCTAGA	1 cut(s)	877
XceI	RCATGY	1 cut(s)	750
XmiI	GTMKAC	2 cut(s)	356, 686
XmnI	GAANNNNTTC	2 cut(s)	257, 807
XspI	CTAG	2 cut(s)	548, 878
ZraI	GACGTC	1 cut(s)	367
Zsp2I	ATGCAT	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.