Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001792

Physical Location & Seq

Genomic Coordinates Reverse (-)

39438544 .. 39439028

Gene Structure 485 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0247500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGAACCACGAACTCTGCAACTAATGGAGCTACAAACCCAGCAACAAATCGAGGATGGAGGAAACAACCAAGCAGCCGGGAGTAGTGCCAACACGGATTTCTGGCGAAGCCGTACCAGGTGGATTCCTACTCCAGATCAAATAAGAATCCTCAAGGATCTTTACTACGACAAGGGAGTTAAGTGCCCAACTACAGAGCACATTCACGAGATCTGCCTCCAGCTGAACCAGTATGGACAGGTTGAGGGCAAGAACATTTACTTTTGGTTCCAGAACGTCAGGGCTCGAGAGAAGCAGATGAAGAGGTGCAATCAGGCTGCTCAAGTGCCCATGGGAACTAGTTCTCCTGGTACTGGTGGATCCATTGATATTAATTTTGGGTCCACTAGTCCTACTGGTGCTGGTGGATCCATCGACATCAATTTTGGGCCATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0001101 GO:0003674 GO:0003824 GO:0004077 GO:0004078 GO:0004080 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005652 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006807 GO:0006996 GO:0007584 GO:0008144 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009305 GO:0009374 GO:0009507 GO:0009536 GO:0009605 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0014070 GO:0016043 GO:0016363 GO:0016569 GO:0016570 GO:0016874 GO:0016879 GO:0018271 GO:0019538 GO:0019842 GO:0019899 GO:0031406 GO:0031667 GO:0031974 GO:0031981 GO:0033218 GO:0033273 GO:0033293 GO:0034399 GO:0036094 GO:0036211 GO:0042221 GO:0042493 GO:0042802 GO:0042803 GO:0042966 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0048037 GO:0050662 GO:0050896 GO:0051276 GO:0070013 GO:0070781 GO:0071110 GO:0071704 GO:0071840 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1901681 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00780 ko01100 map00780 map01100

Pfam Domains

Protein Families

BPL_C BPL_LplA_LipB

Protein Analysis

145

Amino Acids

16.18

Weight (kDa)

6.71

Isoelectric Point (pI)

49.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	38 - 99	7.6e-10	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G37150 AT1G37150 AT1G37150 AT1G37150 AT1G37150 AT1G37150 AT1G37150 AT1G37150 AT1G37150 AT2G25710 AT2G25710 AT2G25710 AT2G25710 AT2G25710 AT2G25710 AT2G25710 AT2G25710
fragaria_vesca	FvH4_2g26260 FvH4_2g26260 FvH4_2g26260 FvH4_2g26260 FvH4_2g26260 FvH4_2g26260 FvH4_2g26260 FvH4_2g26260 FvH4_5g31361
malus_domestica	MD08G1169900.v1.1 MD15G1356700.v1.1
prunus_persica	Prupe.1G503900_v2.0.a1 Prupe.1G503900_v2.0.a1 Prupe.1G503900_v2.0.a1
pyrus_communis	pycom08g14530 pycom15g31890
rosa_chinensis	RchiOBHm_Chr6g0294871
rosa_laevigata	RLG00000011835
rosa_multiflora	Rmu_co8434131.1_g000001 Rmu_sc0008966.1_g000013 Rmu_sc0021726.1_g000002
rosa_roxburghii	Rroxscaffold_7G00172940
rosa_rugosa	Rorug06G0247400 Rorug06G0247500 Rorug06G0247600
rosa_samantha	Rh6AG361000 Rh6BG367600 Rh6CG374800 Rh6DG361500
rosa_wichuraiana	Rw6G031490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	5 cut(s)	165, 354, 367, 402, 415
AfaI	GTAC	2 cut(s)	115, 352
AfiI	CCNNNNNNNGG	1 cut(s)	353
AhlI	ACTAGT	2 cut(s)	338, 386
AjnI	CCWGG	2 cut(s)	116, 346
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AloI	GAACNNNNNNTCC	2 cut(s)	328, 360
AluBI	AGCT	2 cut(s)	31, 223
AluI	AGCT	2 cut(s)	31, 223
Alw21I	GWGCWC	1 cut(s)	201
AlwI	GGATC	5 cut(s)	165, 354, 367, 402, 415
Ama87I	CYCGRG	1 cut(s)	285
AoxI	GGCC	1 cut(s)	428
ApeKI	GCWGC	2 cut(s)	74, 317
ArsI	GACNNNNNNTTYG	1 cut(s)	407
AseI	ATTAAT	1 cut(s)	372
Asp700I	GAANNNNTTC	1 cut(s)	340
AspS9I	GGNCC	2 cut(s)	381, 428
AsuC2I	CCSGG	1 cut(s)	79
AvaI	CYCGRG	1 cut(s)	285
AvaII	GGWCC	1 cut(s)	381
BaeGI	GKGCMC	2 cut(s)	188, 330
BamHI	GGATCC	2 cut(s)	359, 407
BanII	GRGCYC	1 cut(s)	286
BauI	CACGAG	1 cut(s)	206
Bbv12I	GWGCWC	1 cut(s)	201
BbvI	GCAGC	2 cut(s)	86, 304
BccI	CCATC	2 cut(s)	50, 419
BceAI	ACGGC	1 cut(s)	96
BciT130I	CCWGG	2 cut(s)	118, 348
BcnI	CCSGG	1 cut(s)	79
BcuI	ACTAGT	2 cut(s)	338, 386
BfaI	CTAG	2 cut(s)	339, 387
BfmI	CTRYAG	1 cut(s)	192
BglII	AGATCT	1 cut(s)	210
BisI	GCNGC	2 cut(s)	75, 318
BlsI	GCNGC	2 cut(s)	76, 319
Bme1390I	CCNGG	3 cut(s)	79, 118, 348
Bme18I	GGWCC	1 cut(s)	381
BmeT110I	CYCGRG	1 cut(s)	285
BmgT120I	GGNCC	2 cut(s)	381, 428
BmiI	GGNNCC	5 cut(s)	6, 269, 361, 382, 409
BmrFI	CCNGG	3 cut(s)	79, 118, 348
BpmI	CTGGAG	2 cut(s)	117, 203
BpuEI	CTTGAG	2 cut(s)	137, 306
BpuMI	CCSGG	1 cut(s)	79
BsaJI	CCNNGG	1 cut(s)	330
BsaXI	ACNNNNNCTCC	2 cut(s)	328, 358
Bsc4I	CCNNNNNNNGG	1 cut(s)	353
Bse1I	ACTGG	3 cut(s)	229, 358, 400
BseBI	CCWGG	2 cut(s)	118, 348
BseDI	CCNNGG	1 cut(s)	330
BseGI	GGATG	1 cut(s)	61
BseLI	CCNNNNNNNGG	1 cut(s)	353
BseNI	ACTGG	3 cut(s)	229, 358, 400
BseSI	GKGCMC	2 cut(s)	188, 330
BseXI	GCAGC	2 cut(s)	86, 304
BseYI	CCCAGC	1 cut(s)	39
BshFI	GGCC	1 cut(s)	430
BsiHKAI	GWGCWC	1 cut(s)	201
BsiHKCI	CYCGRG	1 cut(s)	285
BsiSI	CCGG	1 cut(s)	78
BslI	CCNNNNNNNGG	1 cut(s)	353
BsnI	GGCC	1 cut(s)	430
BsoBI	CYCGRG	1 cut(s)	285
Bsp1286I	GDGCHC	4 cut(s)	188, 201, 286, 330
Bsp143I	GATC	5 cut(s)	136, 157, 210, 359, 407
Bsp19I	CCATGG	1 cut(s)	330
BspANI	GGCC	1 cut(s)	430
BspLI	GGNNCC	5 cut(s)	6, 269, 361, 382, 409
BspPI	GGATC	5 cut(s)	165, 354, 367, 402, 415
BsrI	ACTGG	3 cut(s)	229, 358, 400
BssECI	CCNNGG	1 cut(s)	330
BssMI	GATC	5 cut(s)	136, 157, 210, 359, 407
BssSI	CACGAG	1 cut(s)	206
BssT1I	CCWWGG	1 cut(s)	330
Bst2BI	CACGAG	1 cut(s)	206
Bst2UI	CCWGG	2 cut(s)	118, 348
Bst6I	CTCTTC	1 cut(s)	296
BstDSI	CCRYGG	1 cut(s)	330
BstF5I	GGATG	1 cut(s)	61
BstKTI	GATC	5 cut(s)	139, 160, 213, 362, 410
BstMBI	GATC	5 cut(s)	136, 157, 210, 359, 407
BstNI	CCWGG	2 cut(s)	118, 348
BstSCI	CCNGG	3 cut(s)	77, 116, 346
BstSFI	CTRYAG	1 cut(s)	192
BstSLI	GKGCMC	2 cut(s)	188, 330
BstV1I	GCAGC	2 cut(s)	86, 304
BstX2I	RGATCY	4 cut(s)	157, 210, 359, 407
BstYI	RGATCY	4 cut(s)	157, 210, 359, 407
BsuRI	GGCC	1 cut(s)	430
BtgI	CCRYGG	1 cut(s)	330
BtsCI	GGATG	1 cut(s)	61
Cfr13I	GGNCC	2 cut(s)	381, 428
CsiI	ACCWGGT	1 cut(s)	116
Csp6I	GTAC	2 cut(s)	114, 351
CviAII	CATG	2 cut(s)	331, 432
CviJI	RGCY	7 cut(s)	31, 77, 111, 223, 284, 317, 430
CviKI_1	RGCY	7 cut(s)	31, 77, 111, 223, 284, 317, 430
CviQI	GTAC	2 cut(s)	114, 351
DpnI	GATC	5 cut(s)	138, 159, 212, 361, 409
DpnII	GATC	5 cut(s)	136, 157, 210, 359, 407
Eam1104I	CTCTTC	1 cut(s)	296
EarI	CTCTTC	1 cut(s)	296
Eco130I	CCWWGG	1 cut(s)	330
Eco24I	GRGCYC	1 cut(s)	286
Eco47I	GGWCC	1 cut(s)	381
Eco88I	CYCGRG	1 cut(s)	285
EcoRII	CCWGG	2 cut(s)	116, 346
EcoT14I	CCWWGG	1 cut(s)	330
EcoT38I	GRGCYC	1 cut(s)	286
ErhI	CCWWGG	1 cut(s)	330
FaeI	CATG	2 cut(s)	334, 435
FaiI	YATR	3 cut(s)	234, 332, 433
FatI	CATG	2 cut(s)	330, 431
Fnu4HI	GCNGC	2 cut(s)	75, 318
FokI	GGATG	1 cut(s)	68
FriOI	GRGCYC	1 cut(s)	286
Fsp4HI	GCNGC	2 cut(s)	75, 318
FspBI	CTAG	2 cut(s)	339, 387
GluI	GCNGC	2 cut(s)	75, 318
GsaI	CCCAGC	1 cut(s)	43
GsuI	CTGGAG	2 cut(s)	117, 203
HaeIII	GGCC	1 cut(s)	430
HapII	CCGG	1 cut(s)	78
Hin1II	CATG	2 cut(s)	334, 435
HinfI	GANTC	2 cut(s)	124, 147
HpaII	CCGG	1 cut(s)	78
Hpy166II	GTNNAC	1 cut(s)	384
Hpy188III	TCNNGA	4 cut(s)	134, 206, 271, 287
Hpy8I	GTNNAC	1 cut(s)	384
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	2 cut(s)	19, 309
HpySE526I	ACGT	1 cut(s)	276
Hsp92II	CATG	2 cut(s)	334, 435
Kzo9I	GATC	5 cut(s)	136, 157, 210, 359, 407
LmnI	GCTCC	1 cut(s)	28
Lsp1109I	GCAGC	2 cut(s)	86, 304
MabI	ACCWGGT	1 cut(s)	116
MaeI	CTAG	2 cut(s)	339, 387
MaeII	ACGT	1 cut(s)	276
MalI	GATC	5 cut(s)	138, 159, 212, 361, 409
MboI	GATC	5 cut(s)	136, 157, 210, 359, 407
MboII	GAAGA	1 cut(s)	313
MflI	RGATCY	4 cut(s)	157, 210, 359, 407
MhlI	GDGCHC	4 cut(s)	188, 201, 286, 330
MluCI	AATT	2 cut(s)	373, 421
MnlI	CCTC	6 cut(s)	46, 53, 161, 227, 238, 297
MroXI	GAANNNNTTC	1 cut(s)	340
MseI	TTAA	2 cut(s)	180, 372
MspA1I	CMGCKG	1 cut(s)	223
MspI	CCGG	1 cut(s)	78
MspR9I	CCNGG	3 cut(s)	79, 118, 348
MvaI	CCWGG	2 cut(s)	118, 348
NciI	CCSGG	1 cut(s)	79
NcoI	CCATGG	1 cut(s)	330
NdeII	GATC	5 cut(s)	136, 157, 210, 359, 407
NlaIII	CATG	2 cut(s)	334, 435
NlaIV	GGNNCC	5 cut(s)	6, 269, 361, 382, 409
PaeR7I	CTCGAG	1 cut(s)	285
PdmI	GAANNNNTTC	1 cut(s)	340
PfeI	GAWTC	2 cut(s)	124, 147
PkrI	GCNGC	2 cut(s)	76, 319
PshBI	ATTAAT	1 cut(s)	372
Psp6I	CCWGG	2 cut(s)	116, 346
PspFI	CCCAGC	1 cut(s)	39
PspGI	CCWGG	2 cut(s)	116, 346
PspN4I	GGNNCC	5 cut(s)	6, 269, 361, 382, 409
PspPI	GGNCC	2 cut(s)	381, 428
PsuI	RGATCY	4 cut(s)	157, 210, 359, 407
PvuII	CAGCTG	1 cut(s)	223
RsaI	GTAC	2 cut(s)	115, 352
RsaNI	GTAC	2 cut(s)	114, 351
SaqAI	TTAA	2 cut(s)	180, 372
SatI	GCNGC	2 cut(s)	75, 318
Sau3AI	GATC	5 cut(s)	136, 157, 210, 359, 407
Sau96I	GGNCC	2 cut(s)	381, 428
ScrFI	CCNGG	3 cut(s)	79, 118, 348
SduI	GDGCHC	4 cut(s)	188, 201, 286, 330
SetI	ASST	6 cut(s)	33, 122, 225, 243, 279, 308
SexAI	ACCWGGT	1 cut(s)	116
SfcI	CTRYAG	1 cut(s)	192
Sfr274I	CTCGAG	1 cut(s)	285
SinI	GGWCC	1 cut(s)	381
SlaI	CTCGAG	1 cut(s)	285
SmlI	CTYRAG	3 cut(s)	152, 285, 321
SmoI	CTYRAG	3 cut(s)	152, 285, 321
SpeI	ACTAGT	2 cut(s)	338, 386
Sse9I	AATT	2 cut(s)	373, 421
SspMI	CTAG	2 cut(s)	339, 387
StyD4I	CCNGG	3 cut(s)	77, 116, 346
StyI	CCWWGG	1 cut(s)	330
TaiI	ACGT	1 cut(s)	279
TaqI	TCGA	3 cut(s)	51, 286, 414
TasI	AATT	2 cut(s)	373, 421
TfiI	GAWTC	2 cut(s)	124, 147
Tru1I	TTAA	2 cut(s)	180, 372
Tru9I	TTAA	2 cut(s)	180, 372
TseI	GCWGC	2 cut(s)	74, 317
TspDTI	ATGAA	1 cut(s)	314
TspGWI	ACGGA	1 cut(s)	110
VpaK11BI	GGWCC	1 cut(s)	381
VspI	ATTAAT	1 cut(s)	372
XhoI	CTCGAG	1 cut(s)	285
XmnI	GAANNNNTTC	1 cut(s)	340
XspI	CTAG	2 cut(s)	339, 387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.